4CW8A

Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre, virulent form
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
138
structure length
138
Chain Sequence
GRATNGQFVTKTAKVLRYKFVRWDALLIIQFIDNIGVIENPTFYRNKSIELRSADFLSPTLNNTYIVPLNGGVRVESPTIPVQLEVILENNSSFIQVGFVRLTVKNGNPHMIIQCNPVPGNIKMIKIKSVMLFTCLIG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Viral protein
source organism Turkey adenovirus 3
publication title Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.
pubmed doi rcsb
molecule keywords FIBER KNOB DOMAIN
total genus 25
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2014-04-01
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.50 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) 4cw8A00
4D62A 3ZPFA 4D63A 3ZPEA 4CW8A
chains in the Genus database with same CATH superfamily
2VTWA 3ZPFA 1UXAA 2VRSA 2WBVA 3ZPEA 4D63A 1H7ZA 2BZUA 3EXVA 2J1KC 3S6XA 3EXWA 4D62A 1P69A 4XC5A 2QLKA 3CNCA 1KACA 4GU4A 2WBWA 4K6UA 4K6TA 2J12A 2JJLA 1QHVA 4CW8A 1UXBA 4K6WA 1UXEA 3QNDA 2O39A 4ODBA 2OJ6A 2J2JA 4XQAA 4ZDGA 1KKEA 4WYJA 1NOBA 3O8EA 4ATZA 5MHSA 4LIYA 2IUNA 2WSTA 2OJ5A 2WGUA 4XL8A 3EOYA 2WGTA 1KNBA 3L89A 3N0IA 4K6VA 3L88A 1QIUA 2W9LC 3BQ4A 4GU3A 2BZVA 2BT7A 2BT8A 3F0YA 4XQBA 2BSFA 2IUMA 1P6AA
chains in the Genus database with same CATH topology
2VTWA 4D62A 3ZPFA 2VRSA 4D63A 3ZPEA 2BT7A 2BT8A 2JJLA 4CW8A 2BSFA 2IUMA 2IUNA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4D62 A;  3ZPF A;  4D63 A;  3ZPE A;  4CW8 A; 
#chains in the Genus database with same CATH topology
 2VTW A;  3ZPF A;  1UXA A;  2VRS A;  2WBV A;  3ZPE A;  4D63 A;  1H7Z A;  2BZU A;  3EXV A;  2J1K C;  3S6X A;  3EXW A;  4D62 A;  1P69 A;  4XC5 A;  2QLK A;  3CNC A;  1KAC A;  4GU4 A;  2WBW A;  4K6U A;  4K6T A;  2J12 A;  2JJL A;  1QHV A;  4CW8 A;  1UXB A;  4K6W A;  1UXE A;  3QND A;  2O39 A;  4ODB A;  2OJ6 A;  2J2J A;  4XQA A;  4ZDG A;  1KKE A;  4WYJ A;  1NOB A;  3O8E A;  4ATZ A;  5MHS A;  4LIY A;  2IUN A;  2WST A;  2OJ5 A;  2WGU A;  4XL8 A;  3EOY A;  2WGT A;  1KNB A;  3L89 A;  3N0I A;  4K6V A;  3L88 A;  1QIU A;  2W9L C;  3BQ4 A;  4GU3 A;  2BZV A;  2BT7 A;  2BT8 A;  3F0Y A;  4XQB A;  2BSF A;  2IUM A;  1P6A A; 
#chains in the Genus database with same CATH homology
 2VTW A;  4D62 A;  3ZPF A;  2VRS A;  4D63 A;  3ZPE A;  2BT7 A;  2BT8 A;  2JJL A;  4CW8 A;  2BSF A;  2IUM A;  2IUN A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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