4D62A

Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre, avirulent form complexed with 3-sialyllactose.
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
138
structure length
138
Chain Sequence
GRATNGQFVTKTAKVLRYKFVRWDALLIIQFIDNIGVMENPTFYRNKSIELRSADFLSPMLNNTYIVPLNGGVRVESPTIPVQLEVILENNSSFIQVGFVRLTVKNGNPHMIIQCNPVPGNIKMIKIKSVMLFTCLIG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.
pubmed doi rcsb
molecule keywords FIBER KNOB DOMAIN
molecule tags Viral protein
source organism Avirulent turkey hemorrhagic enteritis virus
total genus 27
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2014-11-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.90.50 Mainly Beta Sandwich Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) 4d62A00
4CW8A 3ZPFA 4D62A 4D63A 3ZPEA
chains in the Genus database with same CATH superfamily
1QHVA 4XQAA 2O39A 3EXWA 4K6TA 4XQBA 2WBVA 2WSTA 4GU3A 2WGTA 4CW8A 3F0YA 2OJ5A 1KKEA 2BT8A 2WBWA 3O8EA 1QIUA 1P6AA 3N0IA 1KNBA 3ZPEA 2WGUA 2VRSA 4K6UA 2IUNA 2J1KC 2J12A 4ODBA 3ZPFA 2BZUA 1P69A 2VTWA 2JJLA 3BQ4A 2OJ6A 2W9LC 1UXAA 4XL8A 3QNDA 4ATZA 2BZVA 3CNCA 4XC5A 2BT7A 3L89A 4LIYA 3S6XA 4D62A 4ZDGA 2J2JA 1H7ZA 1UXEA 4K6WA 2BSFA 3EOYA 5MHSA 4K6VA 1NOBA 3EXVA 2IUMA 4D63A 4GU4A 2QLKA 4WYJA 3L88A 1UXBA 1KACA
chains in the Genus database with same CATH topology
2VRSA 2IUNA 2BT7A 3ZPFA 4CW8A 2VTWA 4D62A 2JJLA 2IUMA 4D63A 2BT8A 2BSFA 3ZPEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CW8 A;  3ZPF A;  4D62 A;  4D63 A;  3ZPE A; 
#chains in the Genus database with same CATH topology
 1QHV A;  4XQA A;  2O39 A;  3EXW A;  4K6T A;  4XQB A;  2WBV A;  2WST A;  4GU3 A;  2WGT A;  4CW8 A;  3F0Y A;  2OJ5 A;  1KKE A;  2BT8 A;  2WBW A;  3O8E A;  1QIU A;  1P6A A;  3N0I A;  1KNB A;  3ZPE A;  2WGU A;  2VRS A;  4K6U A;  2IUN A;  2J1K C;  2J12 A;  4ODB A;  3ZPF A;  2BZU A;  1P69 A;  2VTW A;  2JJL A;  3BQ4 A;  2OJ6 A;  2W9L C;  1UXA A;  4XL8 A;  3QND A;  4ATZ A;  2BZV A;  3CNC A;  4XC5 A;  2BT7 A;  3L89 A;  4LIY A;  3S6X A;  4D62 A;  4ZDG A;  2J2J A;  1H7Z A;  1UXE A;  4K6W A;  2BSF A;  3EOY A;  5MHS A;  4K6V A;  1NOB A;  3EXV A;  2IUM A;  4D63 A;  4GU4 A;  2QLK A;  4WYJ A;  3L88 A;  1UXB A;  1KAC A; 
#chains in the Genus database with same CATH homology
 2VRS A;  2IUN A;  2BT7 A;  3ZPF A;  4CW8 A;  2VTW A;  4D62 A;  2JJL A;  2IUM A;  4D63 A;  2BT8 A;  2BSF A;  3ZPE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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