4D62 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	138
structure length	138
Chain Sequence	GRATNGQFVTKTAKVLRYKFVRWDALLIIQFIDNIGVMENPTFYRNKSIELRSADFLSPMLNNTYIVPLNGGVRVESPTIPVQLEVILENNSSFIQVGFVRLTVKNGNPHMIIQCNPVPGNIKMIKIKSVMLFTCLIG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 138 atoms

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138 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3. pubmed doi rcsb
molecule keywords	FIBER KNOB DOMAIN
molecule tags	Viral protein
source organism	Avirulent turkey hemorrhagic enteritis virus
total genus	27
structure length	138
sequence length	138
ec nomenclature
pdb deposition date	2014-11-08

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.50	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	4d62A00

3ZPEA 3ZPFA 4CW8A 4D63A 4D62A
chains in the Genus database with same CATH superfamily

3EXVA 2BT8A 1UXBA 1KNBA 2WGTA 3CNCA 4K6UA 3ZPEA 2W9LC 1NOBA 2BZUA 2WBWA 3L89A 4GU4A 4XQBA 3L88A 4GU3A 4CW8A 2QLKA 4LIYA 2JJLA 3EOYA 2VTWA 4WYJA 4XL8A 3N0IA 2J2JA 2WGUA 1KKEA 2BZVA 2OJ5A 3QNDA 3ZPFA 2OJ6A 1QIUA 3EXWA 4K6WA 2IUMA 2BT7A 1QHVA 4XC5A 1KACA 4XQAA 4K6VA 3BQ4A 2J12A 2WSTA 3S6XA 3O8EA 4ODBA 4D63A 3F0YA 1P6AA 1UXAA 2VRSA 1P69A 4ZDGA 2J1KC 4D62A 2O39A 4ATZA 2WBVA 5MHSA 1UXEA 4K6TA 1H7ZA 2IUNA 2BSFA
chains in the Genus database with same CATH topology

2JJLA 2VRSA 2BT8A 2VTWA 2IUMA 3ZPEA 2BT7A 3ZPFA 4CW8A 2IUNA 2BSFA 4D62A 4D63A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3ZPE A;  3ZPF A;  4CW8 A;  4D63 A;  4D62 A; 
#chains in the Genus database with same CATH topology
 3EXV A;  2BT8 A;  1UXB A;  1KNB A;  2WGT A;  3CNC A;  4K6U A;  3ZPE A;  2W9L C;  1NOB A;  2BZU A;  2WBW A;  3L89 A;  4GU4 A;  4XQB A;  3L88 A;  4GU3 A;  4CW8 A;  2QLK A;  4LIY A;  2JJL A;  3EOY A;  2VTW A;  4WYJ A;  4XL8 A;  3N0I A;  2J2J A;  2WGU A;  1KKE A;  2BZV A;  2OJ5 A;  3QND A;  3ZPF A;  2OJ6 A;  1QIU A;  3EXW A;  4K6W A;  2IUM A;  2BT7 A;  1QHV A;  4XC5 A;  1KAC A;  4XQA A;  4K6V A;  3BQ4 A;  2J12 A;  2WST A;  3S6X A;  3O8E A;  4ODB A;  4D63 A;  3F0Y A;  1P6A A;  1UXA A;  2VRS A;  1P69 A;  4ZDG A;  2J1K C;  4D62 A;  2O39 A;  4ATZ A;  2WBV A;  5MHS A;  1UXE A;  4K6T A;  1H7Z A;  2IUN A;  2BSF A; 
#chains in the Genus database with same CATH homology
 2JJL A;  2VRS A;  2BT8 A;  2VTW A;  2IUM A;  3ZPE A;  2BT7 A;  3ZPF A;  4CW8 A;  2IUN A;  2BSF A;  4D62 A;  4D63 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4D62A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization