4D63 | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	138
structure length	138
Chain Sequence	GRATNGQFVTKTAKVLRYKFVRWDALLIIQFIDNIGVMENPTFYRNKSIELRSADFLSPMLNNTYIVPLNGGVRVESPTIPVQLEVILENNSSFIQVGFVRLTVKNGNPHMIIQCNPVPGNIKMIKIKSVMLFTCLIG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 138 atoms

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138 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Avirulent turkey hemorrhagic enteritis virus
publication title	Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3. pubmed doi rcsb
molecule keywords	FIBER KNOB DOMAIN
total genus	26
structure length	138
sequence length	138
ec nomenclature
pdb deposition date	2014-11-08

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.50	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	4d63A00

3ZPEA 4D63A 4D62A 4CW8A 3ZPFA
chains in the Genus database with same CATH superfamily

3BQ4A 2OJ5A 2BZUA 4K6WA 4K6UA 4D63A 2VRSA 4XQAA 3F0YA 3O8EA 2WGUA 2BZVA 2J2JA 1KNBA 4GU4A 3QNDA 4K6VA 3L89A 4GU3A 2BT8A 2W9LC 4K6TA 2WBWA 2IUMA 2O39A 2QLKA 3N0IA 2IUNA 1UXEA 2J12A 2J1KC 4WYJA 1NOBA 1KKEA 2WGTA 1KACA 2WBVA 4LIYA 3ZPFA 4ATZA 3CNCA 3S6XA 5MHSA 4XL8A 2OJ6A 2BSFA 3EXWA 1UXAA 4XC5A 2VTWA 1QHVA 1QIUA 4ZDGA 1P6AA 3EXVA 2WSTA 1P69A 3EOYA 3ZPEA 1H7ZA 1UXBA 3L88A 4ODBA 2BT7A 2JJLA 4D62A 4XQBA 4CW8A
chains in the Genus database with same CATH topology

2BT8A 2IUMA 3ZPEA 2BSFA 2IUNA 2VRSA 4D63A 2BT7A 2JJLA 4D62A 4CW8A 2VTWA 3ZPFA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3ZPE A;  4D63 A;  4D62 A;  4CW8 A;  3ZPF A; 
#chains in the Genus database with same CATH topology
 3BQ4 A;  2OJ5 A;  2BZU A;  4K6W A;  4K6U A;  4D63 A;  2VRS A;  4XQA A;  3F0Y A;  3O8E A;  2WGU A;  2BZV A;  2J2J A;  1KNB A;  4GU4 A;  3QND A;  4K6V A;  3L89 A;  4GU3 A;  2BT8 A;  2W9L C;  4K6T A;  2WBW A;  2IUM A;  2O39 A;  2QLK A;  3N0I A;  2IUN A;  1UXE A;  2J12 A;  2J1K C;  4WYJ A;  1NOB A;  1KKE A;  2WGT A;  1KAC A;  2WBV A;  4LIY A;  3ZPF A;  4ATZ A;  3CNC A;  3S6X A;  5MHS A;  4XL8 A;  2OJ6 A;  2BSF A;  3EXW A;  1UXA A;  4XC5 A;  2VTW A;  1QHV A;  1QIU A;  4ZDG A;  1P6A A;  3EXV A;  2WST A;  1P69 A;  3EOY A;  3ZPE A;  1H7Z A;  1UXB A;  3L88 A;  4ODB A;  2BT7 A;  2JJL A;  4D62 A;  4XQB A;  4CW8 A; 
#chains in the Genus database with same CATH homology
 2BT8 A;  2IUM A;  3ZPE A;  2BSF A;  2IUN A;  2VRS A;  4D63 A;  2BT7 A;  2JJL A;  4D62 A;  4CW8 A;  2VTW A;  3ZPF A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4D63A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization