4H56A

Crystal structure of the clostridium perfringens netb toxin in the membrane inserted form
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
267
structure length
267
Chain Sequence
EAIKYTSSDTASHKGWKATLSGTFIEDPHSDKKTALLNLEGFIPSDKQIFGSKYYGKMKWPETYRINVKSADVNNNIKIANSIPKNTIDKKDVSNSIGYSIGGNISVEGKTAGAGINASYNVQNTISYEQPDFRTIQRKDDANLASWDIKFVETKDGYNIDSYHAIYGNQLFMKSRLYNNGDKNFTDDRDLSTLISGGFSPNMALALTAPKNAKESVIIVEYQRFDNDYILNWETTQWRGTNKLSSTSEYNEFMFKINWQDHKIEYY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular Architecture and Functional Analysis of NetB, a Pore-forming Toxin from Clostridium perfringens.
pubmed doi rcsb
molecule tags Toxin
source organism Clostridium perfringens
molecule keywords Necrotic enteritis toxin B
total genus 40
structure length 267
sequence length 267
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N
ec nomenclature
pdb deposition date 2012-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 4h56A00
4IZLA 1PVLA 4TW1B 3M2LA 4P1XB 2YGTA 1LKFA 4P24A 5K59A 3O44A 4TW1A 3M4EA 3B07B 4H56A 4P1XA 4YHDA 3ROHA 4I0NA 3LKFA 3M3RA 3B07A 3M4DA 4U6VA 4P1YB 3ANZA 5K59C 4IYCA 2QK7B 1T5RA 4IYTA 4Q7GA 4J0OA 4P1YA 7AHLA 2QK7A 4IYAA 4IDJA 2LKFA
chains in the Genus database with same CATH superfamily
4IZLA 1PVLA 4TW1B 3M2LA 1XEZA 4P1XB 2YGTA 1LKFA 4P24A 5K59A 3O44A 4TW1A 3M4EA 3B07B 4H56A 4P1XA 4YHDA 3ROHA 4I0NA 3LKFA 3M3RA 3B07A 3M4DA 4U6VA 4P1YB 3ANZA 5K59C 4IYCA 1T5RA 2QK7B 4IYTA 4Q7GA 4J0OA 4P1YA 7AHLA 2QK7A 4IYAA 4IDJA 2LKFA
chains in the Genus database with same CATH topology
4IZLA 1PVLA 4TW1B 3M2LA 4P1XB 2YGTA 1LKFA 4P24A 5K59A 3O44A 4TW1A 3M4EA 3B07B 4H56A 4P1XA 4YHDA 3ROHA 4I0NA 3LKFA 3M3RA 3B07A 3M4DA 4U6VA 4P1YB 3ANZA 5K59C 4IYCA 2QK7B 1T5RA 4IYTA 4Q7GA 4J0OA 4P1YA 7AHLA 2QK7A 4IYAA 4IDJA 2LKFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IZL A;  1PVL A;  4TW1 B;  3M2L A;  4P1X B;  2YGT A;  1LKF A;  4P24 A;  5K59 A;  3O44 A;  4TW1 A;  3M4E A;  3B07 B;  4H56 A;  4P1X A;  4YHD A;  3ROH A;  4I0N A;  3LKF A;  3M3R A;  3B07 A;  3M4D A;  4U6V A;  4P1Y B;  3ANZ A;  5K59 C;  4IYC A;  2QK7 B;  1T5R A;  4IYT A;  4Q7G A;  4J0O A;  4P1Y A;  7AHL A;  2QK7 A;  4IYA A;  4IDJ A;  2LKF A; 
#chains in the Genus database with same CATH topology
 4IZL A;  1PVL A;  4TW1 B;  3M2L A;  1XEZ A;  4P1X B;  2YGT A;  1LKF A;  4P24 A;  5K59 A;  3O44 A;  4TW1 A;  3M4E A;  3B07 B;  4H56 A;  4P1X A;  4YHD A;  3ROH A;  4I0N A;  3LKF A;  3M3R A;  3B07 A;  3M4D A;  4U6V A;  4P1Y B;  3ANZ A;  5K59 C;  4IYC A;  1T5R A;  2QK7 B;  4IYT A;  4Q7G A;  4J0O A;  4P1Y A;  7AHL A;  2QK7 A;  4IYA A;  4IDJ A;  2LKF A; 
#chains in the Genus database with same CATH homology
 4IZL A;  1PVL A;  4TW1 B;  3M2L A;  4P1X B;  2YGT A;  1LKF A;  4P24 A;  5K59 A;  3O44 A;  4TW1 A;  3M4E A;  3B07 B;  4H56 A;  4P1X A;  4YHD A;  3ROH A;  4I0N A;  3LKF A;  3M3R A;  3B07 A;  3M4D A;  4U6V A;  4P1Y B;  3ANZ A;  5K59 C;  4IYC A;  2QK7 B;  1T5R A;  4IYT A;  4Q7G A;  4J0O A;  4P1Y A;  7AHL A;  2QK7 A;  4IYA A;  4IDJ A;  2LKF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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