4IYAA

Structure of the y250a mutant of the panton-valentine leucocidin s component from staphylococcus aureus
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
283
structure length
283
Chain Sequence
NNIENIGDGAEVVKRTEDTSSDKWGVTQNIQFDFVKDKKYNKDALILKMQGFINSKTTYYNYKNTDHIKAMRWPFQYNIGLKTNDPNVDLINYLPKNKIDSVNVSQTLGYNIGGNFNSGPSTGGNGSFNYSKTISYNQQNYISEVEHQNSKSVQWGIKANSFITSLGKMSGHDPNLFVGYKPYSQNPRDYFVPDNELPPLVHSGFNPSFIATVSHEKGSGDTSEFEITYGRNMDVTHATRRTTHYGNSALEGSRIHNAFVNRNYTVKYEVNWKTHEIKVKGHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Residues essential for panton-valentine leukocidin s component binding to its cell receptor suggest both plasticity and adaptability in its interaction surface
pubmed doi rcsb
molecule tags Toxin
source organism Staphylococcus phage pvl
molecule keywords LukS-PV
total genus 71
structure length 283
sequence length 283
ec nomenclature
pdb deposition date 2013-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 4iyaA00
3O44A 3B07A 4TW1A 3B07B 4Q7GA 4TW1B 3M4EA 7AHLA 1PVLA 4J0OA 2LKFA 1LKFA 4H56A 3ROHA 4P1XA 4P1XB 4IDJA 4IZLA 5K59C 4I0NA 2YGTA 4IYCA 4P24A 3ANZA 4IYAA 4U6VA 1T5RA 5K59A 3LKFA 4YHDA 3M4DA 3M2LA 4P1YA 4IYTA 2QK7A 4P1YB 2QK7B 3M3RA
chains in the Genus database with same CATH superfamily
3O44A 3B07A 4TW1A 3B07B 4Q7GA 4TW1B 3M4EA 7AHLA 1PVLA 4J0OA 2LKFA 1LKFA 4H56A 3ROHA 4P1XA 4P1XB 4IDJA 4IZLA 5K59C 4I0NA 2YGTA 4IYCA 4P24A 3ANZA 4IYAA 4U6VA 1T5RA 5K59A 1XEZA 3LKFA 4YHDA 3M4DA 3M2LA 4P1YA 4IYTA 2QK7A 4P1YB 2QK7B 3M3RA
chains in the Genus database with same CATH topology
3O44A 3B07A 4TW1A 3B07B 4Q7GA 4TW1B 3M4EA 7AHLA 1PVLA 4J0OA 2LKFA 1LKFA 4H56A 3ROHA 4P1XA 4P1XB 4IDJA 4IZLA 5K59C 4I0NA 2YGTA 4IYCA 4P24A 3ANZA 4IYAA 4U6VA 1T5RA 5K59A 3LKFA 4YHDA 3M4DA 3M2LA 4P1YA 4IYTA 2QK7A 4P1YB 2QK7B 3M3RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O44 A;  3B07 A;  4TW1 A;  3B07 B;  4Q7G A;  4TW1 B;  3M4E A;  7AHL A;  1PVL A;  4J0O A;  2LKF A;  1LKF A;  4H56 A;  3ROH A;  4P1X A;  4P1X B;  4IDJ A;  4IZL A;  5K59 C;  4I0N A;  2YGT A;  4IYC A;  4P24 A;  3ANZ A;  4IYA A;  4U6V A;  1T5R A;  5K59 A;  3LKF A;  4YHD A;  3M4D A;  3M2L A;  4P1Y A;  4IYT A;  2QK7 A;  4P1Y B;  2QK7 B;  3M3R A; 
#chains in the Genus database with same CATH topology
 3O44 A;  3B07 A;  4TW1 A;  3B07 B;  4Q7G A;  4TW1 B;  3M4E A;  7AHL A;  1PVL A;  4J0O A;  2LKF A;  1LKF A;  4H56 A;  3ROH A;  4P1X A;  4P1X B;  4IDJ A;  4IZL A;  5K59 C;  4I0N A;  2YGT A;  4IYC A;  4P24 A;  3ANZ A;  4IYA A;  4U6V A;  1T5R A;  5K59 A;  1XEZ A;  3LKF A;  4YHD A;  3M4D A;  3M2L A;  4P1Y A;  4IYT A;  2QK7 A;  4P1Y B;  2QK7 B;  3M3R A; 
#chains in the Genus database with same CATH homology
 3O44 A;  3B07 A;  4TW1 A;  3B07 B;  4Q7G A;  4TW1 B;  3M4E A;  7AHL A;  1PVL A;  4J0O A;  2LKF A;  1LKF A;  4H56 A;  3ROH A;  4P1X A;  4P1X B;  4IDJ A;  4IZL A;  5K59 C;  4I0N A;  2YGT A;  4IYC A;  4P24 A;  3ANZ A;  4IYA A;  4U6V A;  1T5R A;  5K59 A;  3LKF A;  4YHD A;  3M4D A;  3M2L A;  4P1Y A;  4IYT A;  2QK7 A;  4P1Y B;  2QK7 B;  3M3R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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