4K6U | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	184
structure length	184
Chain Sequence	DTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Human adenovirus 37
publication title	Triazole linker-based trivalent sialic acid inhibitors of adenovirus type 37 infection of human corneal epithelial cells. pubmed doi rcsb
molecule keywords	Fiber protein
total genus	43
structure length	184
sequence length	184
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2013-04-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	4k6uA00

4LIYA 1KACA 4XQBA 4K6VA 4K6TA 1UXEA 2WGTA 4ATZA 3BQ4A 1QHVA 1P6AA 1NOBA 3L89A 3QNDA 2J12A 3F0YA 4XL8A 4XQAA 4WYJA 2WGUA 2W9LC 3L88A 1UXBA 4ZDGA 2J2JA 1KNBA 3EXWA 2BZUA 2BZVA 2O39A 1P69A 3N0IA 3CNCA 4K6UA 2WBWA 4K6WA 2J1KC 3EXVA 1UXAA 2QLKA 1H7ZA 3O8EA 2WBVA 1QIUA 2WSTA
chains in the Genus database with same CATH superfamily

4LIYA 1KACA 4XQBA 4K6VA 4GU3A 4K6TA 1UXEA 4D63A 2WGTA 2BT8A 4ODBA 4ATZA 3BQ4A 1QHVA 2OJ5A 1P6AA 1NOBA 2OJ6A 1KKEA 2IUNA 3L89A 3QNDA 4D62A 5MHSA 2J12A 3F0YA 4GU4A 4XL8A 4WYJA 4XQAA 3ZPEA 2WGUA 2W9LC 2VTWA 3L88A 1UXBA 2JJLA 2VRSA 3ZPFA 4ZDGA 2J2JA 4CW8A 3EOYA 1KNBA 3EXWA 3S6XA 2BZUA 2BZVA 2O39A 1P69A 3N0IA 3CNCA 2BSFA 4XC5A 2BT7A 4K6UA 2IUMA 2WBWA 2J1KC 3EXVA 1UXAA 4K6WA 2QLKA 1H7ZA 3O8EA 2WBVA 1QIUA 2WSTA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4LIY A;  1KAC A;  4XQB A;  4K6V A;  4K6T A;  1UXE A;  2WGT A;  4ATZ A;  3BQ4 A;  1QHV A;  1P6A A;  1NOB A;  3L89 A;  3QND A;  2J12 A;  3F0Y A;  4XL8 A;  4XQA A;  4WYJ A;  2WGU A;  2W9L C;  3L88 A;  1UXB A;  4ZDG A;  2J2J A;  1KNB A;  3EXW A;  2BZU A;  2BZV A;  2O39 A;  1P69 A;  3N0I A;  3CNC A;  4K6U A;  2WBW A;  4K6W A;  2J1K C;  3EXV A;  1UXA A;  2QLK A;  1H7Z A;  3O8E A;  2WBV A;  1QIU A;  2WST A; 
#chains in the Genus database with same CATH topology
 4LIY A;  1KAC A;  4XQB A;  4K6V A;  4GU3 A;  4K6T A;  1UXE A;  4D63 A;  2WGT A;  2BT8 A;  4ODB A;  4ATZ A;  3BQ4 A;  1QHV A;  2OJ5 A;  1P6A A;  1NOB A;  2OJ6 A;  1KKE A;  2IUN A;  3L89 A;  3QND A;  4D62 A;  5MHS A;  2J12 A;  3F0Y A;  4GU4 A;  4XL8 A;  4WYJ A;  4XQA A;  3ZPE A;  2WGU A;  2W9L C;  2VTW A;  3L88 A;  1UXB A;  2JJL A;  2VRS A;  3ZPF A;  4ZDG A;  2J2J A;  4CW8 A;  3EOY A;  1KNB A;  3EXW A;  3S6X A;  2BZU A;  2BZV A;  2O39 A;  1P69 A;  3N0I A;  3CNC A;  2BSF A;  4XC5 A;  2BT7 A;  4K6U A;  2IUM A;  2WBW A;  2J1K C;  3EXV A;  1UXA A;  4K6W A;  2QLK A;  1H7Z A;  3O8E A;  2WBV A;  1QIU A;  2WST A; 
#chains in the Genus database with same CATH homology
 4LIY A;  1KAC A;  4XQB A;  4K6V A;  4K6T A;  1UXE A;  2WGT A;  4ATZ A;  3BQ4 A;  1QHV A;  1P6A A;  1NOB A;  3L89 A;  3QND A;  2J12 A;  3F0Y A;  4XL8 A;  4XQA A;  4WYJ A;  2WGU A;  2W9L C;  3L88 A;  1UXB A;  4ZDG A;  2J2J A;  1KNB A;  3EXW A;  2BZU A;  2BZV A;  2O39 A;  1P69 A;  3N0I A;  3CNC A;  4K6U A;  2WBW A;  4K6W A;  2J1K C;  3EXV A;  1UXA A;  2QLK A;  1H7Z A;  3O8E A;  2WBV A;  1QIU A;  2WST A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4K6UA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations