4P1XA

Crystal structure of staphylococcal luk prepore
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
284
structure length
265
Chain Sequence
VTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins.
pubmed doi rcsb
molecule tags Toxin
source organism Staphylococcus aureus
molecule keywords Gamma-hemolysin component C
total genus 62
structure length 265
sequence length 284
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2014-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 4p1xA00
1PVLA 3M4EA 7AHLA 3ANZA 2YGTA 3M4DA 4I0NA 4U6VA 4IYAA 2QK7B 4IYTA 2QK7A 3O44A 4P1YB 4P1YA 3M2LA 1LKFA 4P1XB 4P1XA 4IZLA 3ROHA 3M3RA 4J0OA 2LKFA 5K59A 4P24A 5K59C 4Q7GA 3LKFA 4TW1B 4TW1A 3B07B 3B07A 4IDJA 4IYCA 1T5RA 4H56A 4YHDA
chains in the Genus database with same CATH superfamily
1PVLA 3M4EA 7AHLA 3ANZA 2YGTA 3M4DA 4I0NA 4U6VA 4IYAA 2QK7B 4IYTA 2QK7A 3O44A 4P1YB 4P1YA 3M2LA 1LKFA 4P1XB 4P1XA 4IZLA 3ROHA 3M3RA 4J0OA 1XEZA 2LKFA 5K59A 4P24A 5K59C 4Q7GA 3LKFA 4TW1B 4TW1A 3B07B 3B07A 4IDJA 4IYCA 1T5RA 4H56A 4YHDA
chains in the Genus database with same CATH topology
1PVLA 3M4EA 7AHLA 3ANZA 2YGTA 3M4DA 4I0NA 4U6VA 4IYAA 2QK7B 4IYTA 2QK7A 3O44A 4P1YB 4P1YA 3M2LA 1LKFA 4P1XB 4P1XA 4IZLA 3ROHA 3M3RA 4J0OA 2LKFA 5K59A 4P24A 5K59C 4Q7GA 3LKFA 4TW1B 4TW1A 3B07B 3B07A 4IDJA 4IYCA 1T5RA 4H56A 4YHDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PVL A;  3M4E A;  7AHL A;  3ANZ A;  2YGT A;  3M4D A;  4I0N A;  4U6V A;  4IYA A;  2QK7 B;  4IYT A;  2QK7 A;  3O44 A;  4P1Y B;  4P1Y A;  3M2L A;  1LKF A;  4P1X B;  4P1X A;  4IZL A;  3ROH A;  3M3R A;  4J0O A;  2LKF A;  5K59 A;  4P24 A;  5K59 C;  4Q7G A;  3LKF A;  4TW1 B;  4TW1 A;  3B07 B;  3B07 A;  4IDJ A;  4IYC A;  1T5R A;  4H56 A;  4YHD A; 
#chains in the Genus database with same CATH topology
 1PVL A;  3M4E A;  7AHL A;  3ANZ A;  2YGT A;  3M4D A;  4I0N A;  4U6V A;  4IYA A;  2QK7 B;  4IYT A;  2QK7 A;  3O44 A;  4P1Y B;  4P1Y A;  3M2L A;  1LKF A;  4P1X B;  4P1X A;  4IZL A;  3ROH A;  3M3R A;  4J0O A;  1XEZ A;  2LKF A;  5K59 A;  4P24 A;  5K59 C;  4Q7G A;  3LKF A;  4TW1 B;  4TW1 A;  3B07 B;  3B07 A;  4IDJ A;  4IYC A;  1T5R A;  4H56 A;  4YHD A; 
#chains in the Genus database with same CATH homology
 1PVL A;  3M4E A;  7AHL A;  3ANZ A;  2YGT A;  3M4D A;  4I0N A;  4U6V A;  4IYA A;  2QK7 B;  4IYT A;  2QK7 A;  3O44 A;  4P1Y B;  4P1Y A;  3M2L A;  1LKF A;  4P1X B;  4P1X A;  4IZL A;  3ROH A;  3M3R A;  4J0O A;  2LKF A;  5K59 A;  4P24 A;  5K59 C;  4Q7G A;  3LKF A;  4TW1 B;  4TW1 A;  3B07 B;  3B07 A;  4IDJ A;  4IYC A;  1T5R A;  4H56 A;  4YHD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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