4P1XB

Crystal structure of staphylococcal luk prepore
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
275
structure length
257
Chain Sequence
DIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNISFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Molecular basis of transmembrane beta-barrel formation of staphylococcal pore-forming toxins.
pubmed doi rcsb
molecule tags Toxin
source organism Staphylococcus aureus
molecule keywords Gamma-hemolysin component C
total genus 62
structure length 257
sequence length 275
chains with identical sequence D, F, H
ec nomenclature
pdb deposition date 2014-02-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 4p1xB00
4IYCA 3O44A 4J0OA 5K59C 3M3RA 4P1XB 3M4EA 2YGTA 4P24A 4P1YB 4IZLA 4IYAA 1LKFA 3ANZA 1PVLA 3M2LA 5K59A 4TW1A 3B07A 4Q7GA 4IDJA 2QK7A 1T5RA 4I0NA 3ROHA 3M4DA 4TW1B 3B07B 4P1XA 4YHDA 2LKFA 7AHLA 3LKFA 2QK7B 4IYTA 4H56A 4P1YA 4U6VA
chains in the Genus database with same CATH superfamily
4IYCA 3O44A 4J0OA 5K59C 3M3RA 4P1XB 3M4EA 2YGTA 4P24A 4P1YB 4IZLA 4IYAA 1LKFA 3ANZA 1PVLA 3M2LA 5K59A 4TW1A 3B07A 4Q7GA 4IDJA 2QK7A 1T5RA 4I0NA 3ROHA 3M4DA 4TW1B 3B07B 1XEZA 4P1XA 4YHDA 2LKFA 7AHLA 3LKFA 2QK7B 4IYTA 4H56A 4P1YA 4U6VA
chains in the Genus database with same CATH topology
4IYCA 3O44A 4J0OA 5K59C 3M3RA 4P1XB 3M4EA 2YGTA 4P24A 4P1YB 4IZLA 4IYAA 1LKFA 3ANZA 1PVLA 3M2LA 5K59A 4TW1A 3B07A 4Q7GA 4IDJA 2QK7A 1T5RA 4I0NA 3ROHA 3M4DA 4TW1B 3B07B 4P1XA 4YHDA 2LKFA 7AHLA 3LKFA 2QK7B 4IYTA 4H56A 4P1YA 4U6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IYC A;  3O44 A;  4J0O A;  5K59 C;  3M3R A;  4P1X B;  3M4E A;  2YGT A;  4P24 A;  4P1Y B;  4IZL A;  4IYA A;  1LKF A;  3ANZ A;  1PVL A;  3M2L A;  5K59 A;  4TW1 A;  3B07 A;  4Q7G A;  4IDJ A;  2QK7 A;  1T5R A;  4I0N A;  3ROH A;  3M4D A;  4TW1 B;  3B07 B;  4P1X A;  4YHD A;  2LKF A;  7AHL A;  3LKF A;  2QK7 B;  4IYT A;  4H56 A;  4P1Y A;  4U6V A; 
#chains in the Genus database with same CATH topology
 4IYC A;  3O44 A;  4J0O A;  5K59 C;  3M3R A;  4P1X B;  3M4E A;  2YGT A;  4P24 A;  4P1Y B;  4IZL A;  4IYA A;  1LKF A;  3ANZ A;  1PVL A;  3M2L A;  5K59 A;  4TW1 A;  3B07 A;  4Q7G A;  4IDJ A;  2QK7 A;  1T5R A;  4I0N A;  3ROH A;  3M4D A;  4TW1 B;  3B07 B;  1XEZ A;  4P1X A;  4YHD A;  2LKF A;  7AHL A;  3LKF A;  2QK7 B;  4IYT A;  4H56 A;  4P1Y A;  4U6V A; 
#chains in the Genus database with same CATH homology
 4IYC A;  3O44 A;  4J0O A;  5K59 C;  3M3R A;  4P1X B;  3M4E A;  2YGT A;  4P24 A;  4P1Y B;  4IZL A;  4IYA A;  1LKF A;  3ANZ A;  1PVL A;  3M2L A;  5K59 A;  4TW1 A;  3B07 A;  4Q7G A;  4IDJ A;  2QK7 A;  1T5R A;  4I0N A;  3ROH A;  3M4D A;  4TW1 B;  3B07 B;  4P1X A;  4YHD A;  2LKF A;  7AHL A;  3LKF A;  2QK7 B;  4IYT A;  4H56 A;  4P1Y A;  4U6V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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