4Q7GA

1.7 angstrom crystal structure of leukotoxin lukd from staphylococcus aureus.
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
300
structure length
300
Chain Sequence
AQHITPVSEKKVDDKITLYKTTATSDNDKLNISQILTFNFIKDKSYDKDTLVLKAAGNINSGYKKPNPKDYNYSQFYWGGKYNVSVSSESNDAVNVVDYAPKNQNEEFQVQQTLGYSYGGDINISNGLSGGLNGSKSFSETINYKQESYRTTIDRKTNHKSIGWGVEAHKIMNNGWGPYGRDSYDPTYGNELFLGGRQSSSNAGQNFLPTHQMPLLARGNFNPEFISVLSHKQNDTKKSKIKVTYQREMDRYTNQWNRLHWVGNNYKNQNTVTFTSTYEVDWQNHTVKLIGTDSKETNPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of the components of the Staphylococcus aureus leukotoxin ED.
pubmed doi rcsb
molecule tags Toxin
source organism Staphylococcus aureus subsp. aureus
molecule keywords Leucotoxin LukDv
total genus 77
structure length 300
sequence length 300
ec nomenclature
pdb deposition date 2014-04-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07968 Leukocidin Leukocidin/Hemolysin toxin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.240.10 Mainly Beta Distorted Sandwich Leukocidin-like Leukocidin/porin MspA 4q7gA00
1PVLA 2QK7B 3O44A 4TW1B 3ANZA 3LKFA 3B07A 2QK7A 1T5RA 4IYCA 4P1XB 4TW1A 5K59A 3M3RA 4P24A 4P1XA 4U6VA 4IDJA 3ROHA 4IYAA 5K59C 4J0OA 3M4DA 2YGTA 4YHDA 4P1YB 3M4EA 4I0NA 4Q7GA 4H56A 3M2LA 2LKFA 4IZLA 1LKFA 4P1YA 7AHLA 3B07B 4IYTA
chains in the Genus database with same CATH superfamily
1PVLA 2QK7B 3O44A 4TW1B 3ANZA 3LKFA 3B07A 2QK7A 1T5RA 4IYCA 4P1XB 4TW1A 5K59A 3M3RA 4P24A 4P1XA 4U6VA 4IDJA 3ROHA 4IYAA 5K59C 4J0OA 3M4DA 2YGTA 4YHDA 1XEZA 4P1YB 3M4EA 4I0NA 4Q7GA 4H56A 3M2LA 2LKFA 4IZLA 1LKFA 4P1YA 7AHLA 3B07B 4IYTA
chains in the Genus database with same CATH topology
1PVLA 2QK7B 3O44A 4TW1B 3ANZA 3LKFA 3B07A 2QK7A 1T5RA 4IYCA 4P1XB 4TW1A 5K59A 3M3RA 4P24A 4P1XA 4U6VA 4IDJA 3ROHA 4IYAA 5K59C 4J0OA 3M4DA 2YGTA 4YHDA 4P1YB 3M4EA 4I0NA 4Q7GA 4H56A 3M2LA 2LKFA 4IZLA 1LKFA 4P1YA 7AHLA 3B07B 4IYTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PVL A;  2QK7 B;  3O44 A;  4TW1 B;  3ANZ A;  3LKF A;  3B07 A;  2QK7 A;  1T5R A;  4IYC A;  4P1X B;  4TW1 A;  5K59 A;  3M3R A;  4P24 A;  4P1X A;  4U6V A;  4IDJ A;  3ROH A;  4IYA A;  5K59 C;  4J0O A;  3M4D A;  2YGT A;  4YHD A;  4P1Y B;  3M4E A;  4I0N A;  4Q7G A;  4H56 A;  3M2L A;  2LKF A;  4IZL A;  1LKF A;  4P1Y A;  7AHL A;  3B07 B;  4IYT A; 
#chains in the Genus database with same CATH topology
 1PVL A;  2QK7 B;  3O44 A;  4TW1 B;  3ANZ A;  3LKF A;  3B07 A;  2QK7 A;  1T5R A;  4IYC A;  4P1X B;  4TW1 A;  5K59 A;  3M3R A;  4P24 A;  4P1X A;  4U6V A;  4IDJ A;  3ROH A;  4IYA A;  5K59 C;  4J0O A;  3M4D A;  2YGT A;  4YHD A;  1XEZ A;  4P1Y B;  3M4E A;  4I0N A;  4Q7G A;  4H56 A;  3M2L A;  2LKF A;  4IZL A;  1LKF A;  4P1Y A;  7AHL A;  3B07 B;  4IYT A; 
#chains in the Genus database with same CATH homology
 1PVL A;  2QK7 B;  3O44 A;  4TW1 B;  3ANZ A;  3LKF A;  3B07 A;  2QK7 A;  1T5R A;  4IYC A;  4P1X B;  4TW1 A;  5K59 A;  3M3R A;  4P24 A;  4P1X A;  4U6V A;  4IDJ A;  3ROH A;  4IYA A;  5K59 C;  4J0O A;  3M4D A;  2YGT A;  4YHD A;  4P1Y B;  3M4E A;  4I0N A;  4Q7G A;  4H56 A;  3M2L A;  2LKF A;  4IZL A;  1LKF A;  4P1Y A;  7AHL A;  3B07 B;  4IYT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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