4WYJ | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	191
structure length	189
Chain Sequence	KNNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKADFSARGFMPSTTAYPFDLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 189 atoms

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189 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Human adenovirus b serotype 3
publication title	Preclinical safety and efficacy studies with an affinity-enhanced epithelial junction opener and PEGylated liposomal doxorubicin. pubmed doi rcsb
molecule keywords	Fiber protein
total genus	31
structure length	189
sequence length	191
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2014-11-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	4wyjA00

3O8EA 4LIYA 1H7ZA 2WSTA 1KACA 3L89A 4ZDGA 3EXWA 1QIUA 4XQBA 4ATZA 1UXAA 1P69A 1KNBA 2WGUA 3N0IA 4K6UA 1P6AA 2BZVA 2J2JA 2O39A 4XQAA 1NOBA 2J12A 1QHVA 3EXVA 3CNCA 2WGTA 3QNDA 2WBWA 1UXBA 2BZUA 4K6VA 2W9LC 4K6TA 3L88A 4K6WA 2WBVA 3BQ4A 3F0YA 1UXEA 2QLKA 4XL8A 4WYJA 2J1KC
chains in the Genus database with same CATH superfamily

2BT7A 3O8EA 2OJ5A 4LIYA 1H7ZA 2WSTA 1KACA 3L89A 4ZDGA 2OJ6A 3EXWA 1QIUA 4XQBA 4ATZA 5MHSA 1UXAA 1P69A 2BT8A 4D63A 1KNBA 2WGUA 4GU3A 3N0IA 4K6UA 1P6AA 2BZVA 2IUMA 2J2JA 2O39A 1NOBA 4XQAA 3ZPFA 2J12A 1QHVA 3EXVA 4ODBA 3CNCA 4CW8A 1KKEA 4WYJA 2WGTA 4D62A 4GU4A 2BSFA 3QNDA 4XC5A 2WBWA 1UXBA 2BZUA 4K6VA 2W9LC 4K6TA 3ZPEA 2IUNA 3L88A 4K6WA 2VTWA 2VRSA 2WBVA 3BQ4A 3F0YA 1UXEA 2QLKA 3EOYA 4XL8A 3S6XA 2JJLA 2J1KC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3O8E A;  4LIY A;  1H7Z A;  2WST A;  1KAC A;  3L89 A;  4ZDG A;  3EXW A;  1QIU A;  4XQB A;  4ATZ A;  1UXA A;  1P69 A;  1KNB A;  2WGU A;  3N0I A;  4K6U A;  1P6A A;  2BZV A;  2J2J A;  2O39 A;  4XQA A;  1NOB A;  2J12 A;  1QHV A;  3EXV A;  3CNC A;  2WGT A;  3QND A;  2WBW A;  1UXB A;  2BZU A;  4K6V A;  2W9L C;  4K6T A;  3L88 A;  4K6W A;  2WBV A;  3BQ4 A;  3F0Y A;  1UXE A;  2QLK A;  4XL8 A;  4WYJ A;  2J1K C; 
#chains in the Genus database with same CATH topology
 2BT7 A;  3O8E A;  2OJ5 A;  4LIY A;  1H7Z A;  2WST A;  1KAC A;  3L89 A;  4ZDG A;  2OJ6 A;  3EXW A;  1QIU A;  4XQB A;  4ATZ A;  5MHS A;  1UXA A;  1P69 A;  2BT8 A;  4D63 A;  1KNB A;  2WGU A;  4GU3 A;  3N0I A;  4K6U A;  1P6A A;  2BZV A;  2IUM A;  2J2J A;  2O39 A;  1NOB A;  4XQA A;  3ZPF A;  2J12 A;  1QHV A;  3EXV A;  4ODB A;  3CNC A;  4CW8 A;  1KKE A;  4WYJ A;  2WGT A;  4D62 A;  4GU4 A;  2BSF A;  3QND A;  4XC5 A;  2WBW A;  1UXB A;  2BZU A;  4K6V A;  2W9L C;  4K6T A;  3ZPE A;  2IUN A;  3L88 A;  4K6W A;  2VTW A;  2VRS A;  2WBV A;  3BQ4 A;  3F0Y A;  1UXE A;  2QLK A;  3EOY A;  4XL8 A;  3S6X A;  2JJL A;  2J1K C; 
#chains in the Genus database with same CATH homology
 3O8E A;  4LIY A;  1H7Z A;  2WST A;  1KAC A;  3L89 A;  4ZDG A;  3EXW A;  1QIU A;  4XQB A;  4ATZ A;  1UXA A;  1P69 A;  1KNB A;  2WGU A;  3N0I A;  4K6U A;  1P6A A;  2BZV A;  2J2J A;  2O39 A;  4XQA A;  1NOB A;  2J12 A;  1QHV A;  3EXV A;  3CNC A;  2WGT A;  3QND A;  2WBW A;  1UXB A;  2BZU A;  4K6V A;  2W9L C;  4K6T A;  3L88 A;  4K6W A;  2WBV A;  3BQ4 A;  3F0Y A;  1UXE A;  2QLK A;  4XL8 A;  4WYJ A;  2J1K C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4WYJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations