4XC5 | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	162
structure length	162
Chain Sequence	SLPTYRYPLELDTANNRVQVADRFGMRTGTWTGQLQYQHPQLSWRANVTLNLMKVDDWLVLSFSQMTTNSIMADGKFVINFVSGLSSGWQTGDTEPSSTIDPLSTTFAAVQFLNNGQRIDAFRIMGVSEWTDGELEIKNYGGTYTGHTQVYWAPWTIMYPCN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 162 atoms

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162 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Mammalian orthoreovirus 1 lang
publication title	Structure of Serotype 1 Reovirus Attachment Protein sigma 1 in Complex with Junctional Adhesion Molecule A Reveals a Conserved Serotype-Independent Binding Epitope. pubmed doi rcsb
molecule keywords	Outer capsid protein sigma-1
total genus	30
structure length	162
sequence length	162
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2014-12-17

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.20	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Virus attachment protein , globular domain	4xc5A00

4GU3A 1KKEA 2OJ6A 3S6XA 4XC5A 4ODBA 5MHSA 4GU4A 2OJ5A 3EOYA
chains in the Genus database with same CATH superfamily

4GU3A 2QLKA 2BT8A 3ZPEA 1UXBA 1UXEA 1P69A 2WGUA 4LIYA 4D63A 2J2JA 1UXAA 2O39A 1KACA 4WYJA 2BZVA 3L89A 4ODBA 4ATZA 2BSFA 2IUMA 2WBVA 2WGTA 4XL8A 4XQAA 2VRSA 3EXVA 3O8EA 2J1KC 3L88A 3EOYA 1H7ZA 4K6TA 4XQBA 1KKEA 4D62A 1NOBA 3S6XA 3BQ4A 4XC5A 3QNDA 2J12A 2OJ5A 1QHVA 2WBWA 3CNCA 4GU4A 2VTWA 2W9LC 4K6WA 1QIUA 2IUNA 3F0YA 3ZPFA 1KNBA 2OJ6A 3EXWA 4K6VA 2BZUA 2WSTA 4ZDGA 1P6AA 4K6UA 5MHSA 2BT7A 2JJLA 3N0IA 4CW8A
chains in the Genus database with same CATH topology

4GU3A 1KKEA 2OJ6A 3S6XA 4XC5A 4ODBA 5MHSA 4GU4A 2OJ5A 3EOYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4GU3 A;  1KKE A;  2OJ6 A;  3S6X A;  4XC5 A;  4ODB A;  5MHS A;  4GU4 A;  2OJ5 A;  3EOY A; 
#chains in the Genus database with same CATH topology
 4GU3 A;  2QLK A;  2BT8 A;  3ZPE A;  1UXB A;  1UXE A;  1P69 A;  2WGU A;  4LIY A;  4D63 A;  2J2J A;  1UXA A;  2O39 A;  1KAC A;  4WYJ A;  2BZV A;  3L89 A;  4ODB A;  4ATZ A;  2BSF A;  2IUM A;  2WBV A;  2WGT A;  4XL8 A;  4XQA A;  2VRS A;  3EXV A;  3O8E A;  2J1K C;  3L88 A;  3EOY A;  1H7Z A;  4K6T A;  4XQB A;  1KKE A;  4D62 A;  1NOB A;  3S6X A;  3BQ4 A;  4XC5 A;  3QND A;  2J12 A;  2OJ5 A;  1QHV A;  2WBW A;  3CNC A;  4GU4 A;  2VTW A;  2W9L C;  4K6W A;  1QIU A;  2IUN A;  3F0Y A;  3ZPF A;  1KNB A;  2OJ6 A;  3EXW A;  4K6V A;  2BZU A;  2WST A;  4ZDG A;  1P6A A;  4K6U A;  5MHS A;  2BT7 A;  2JJL A;  3N0I A;  4CW8 A; 
#chains in the Genus database with same CATH homology
 4GU3 A;  1KKE A;  2OJ6 A;  3S6X A;  4XC5 A;  4ODB A;  5MHS A;  4GU4 A;  2OJ5 A;  3EOY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4XC5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization