4XL8 | Genus

Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	40
sequence length	171
structure length	171
Chain Sequence	GIQTLWTPPTSNPNCTVYTESDSLLSLCLTKCGAHVLGSVSLTGVAGTMTNMAETSLAIEFTFDDTGKLLHSPLVNNTFSIRQGDSPASNPTYNALAFMPNSTLYARGGSGEPRNNYYVQTYLRGNVQRPITLTVTFNSAATGYSLSFKWTAVVREKFAAPATSFCYITEQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 171 atoms

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171 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Human adenovirus 52
publication title	Human Adenovirus 52 Uses Sialic Acid-containing Glycoproteins and the Coxsackie and Adenovirus Receptor for Binding to Target Cells. pubmed doi rcsb
molecule keywords	Fiber-1
total genus	40
structure length	171
sequence length	171
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2015-01-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	4xl8A00

2WGUA 2WBVA 1UXAA 4ZDGA 1H7ZA 3O8EA 3L88A 3CNCA 1QHVA 1KNBA 4K6TA 4XL8A 4WYJA 2WBWA 4K6UA 1QIUA 1UXBA 1NOBA 4K6WA 2J1KC 3EXVA 1UXEA 2J2JA 4LIYA 2WSTA 3EXWA 3L89A 2O39A 3N0IA 1KACA 4K6VA 4ATZA 4XQAA 4XQBA 2WGTA 1P69A 2BZVA 3BQ4A 3F0YA 2W9LC 2BZUA 2J12A 2QLKA 3QNDA 1P6AA
chains in the Genus database with same CATH superfamily

2WGUA 4XC5A 2WBVA 1UXAA 4ZDGA 1H7ZA 3O8EA 2JJLA 3L88A 2IUNA 3CNCA 1QHVA 2BT7A 1KNBA 4K6TA 4ODBA 4XL8A 4WYJA 5MHSA 3QNDA 3ZPFA 2WBWA 2OJ6A 4K6UA 3EOYA 2VTWA 4GU4A 1QIUA 1UXBA 1NOBA 4GU3A 4K6WA 2J1KC 3EXVA 1UXEA 2J2JA 4LIYA 2WSTA 4D63A 3EXWA 3L89A 2O39A 3N0IA 1KACA 4K6VA 1KKEA 3ZPEA 4ATZA 4XQAA 4XQBA 4CW8A 2BT8A 2WGTA 4D62A 1P69A 2IUMA 3S6XA 2BZVA 2OJ5A 3BQ4A 3F0YA 2W9LC 2VRSA 2BZUA 2J12A 2QLKA 2BSFA 1P6AA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2WGU A;  2WBV A;  1UXA A;  4ZDG A;  1H7Z A;  3O8E A;  3L88 A;  3CNC A;  1QHV A;  1KNB A;  4K6T A;  4XL8 A;  4WYJ A;  2WBW A;  4K6U A;  1QIU A;  1UXB A;  1NOB A;  4K6W A;  2J1K C;  3EXV A;  1UXE A;  2J2J A;  4LIY A;  2WST A;  3EXW A;  3L89 A;  2O39 A;  3N0I A;  1KAC A;  4K6V A;  4ATZ A;  4XQA A;  4XQB A;  2WGT A;  1P69 A;  2BZV A;  3BQ4 A;  3F0Y A;  2W9L C;  2BZU A;  2J12 A;  2QLK A;  3QND A;  1P6A A; 
#chains in the Genus database with same CATH topology
 2WGU A;  4XC5 A;  2WBV A;  1UXA A;  4ZDG A;  1H7Z A;  3O8E A;  2JJL A;  3L88 A;  2IUN A;  3CNC A;  1QHV A;  2BT7 A;  1KNB A;  4K6T A;  4ODB A;  4XL8 A;  4WYJ A;  5MHS A;  3QND A;  3ZPF A;  2WBW A;  2OJ6 A;  4K6U A;  3EOY A;  2VTW A;  4GU4 A;  1QIU A;  1UXB A;  1NOB A;  4GU3 A;  4K6W A;  2J1K C;  3EXV A;  1UXE A;  2J2J A;  4LIY A;  2WST A;  4D63 A;  3EXW A;  3L89 A;  2O39 A;  3N0I A;  1KAC A;  4K6V A;  1KKE A;  3ZPE A;  4ATZ A;  4XQA A;  4XQB A;  4CW8 A;  2BT8 A;  2WGT A;  4D62 A;  1P69 A;  2IUM A;  3S6X A;  2BZV A;  2OJ5 A;  3BQ4 A;  3F0Y A;  2W9L C;  2VRS A;  2BZU A;  2J12 A;  2QLK A;  2BSF A;  1P6A A; 
#chains in the Genus database with same CATH homology
 2WGU A;  2WBV A;  1UXA A;  4ZDG A;  1H7Z A;  3O8E A;  3L88 A;  3CNC A;  1QHV A;  1KNB A;  4K6T A;  4XL8 A;  4WYJ A;  2WBW A;  4K6U A;  1QIU A;  1UXB A;  1NOB A;  4K6W A;  2J1K C;  3EXV A;  1UXE A;  2J2J A;  4LIY A;  2WST A;  3EXW A;  3L89 A;  2O39 A;  3N0I A;  1KAC A;  4K6V A;  4ATZ A;  4XQA A;  4XQB A;  2WGT A;  1P69 A;  2BZV A;  3BQ4 A;  3F0Y A;  2W9L C;  2BZU A;  2J12 A;  2QLK A;  3QND A;  1P6A A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4XL8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations