4XQA | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	184
structure length	184
Chain Sequence	DTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 184 atoms

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184 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Viral protein
source organism	Human adenovirus 37
publication title	Triazole linker-based trivalent sialic acid inhibitors of adenovirus type 37 infection of human corneal epithelial cells. pubmed doi rcsb
molecule keywords	Fiber
total genus	44
structure length	184
sequence length	184
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2015-01-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	4xqaA00

1KNBA 4LIYA 3L89A 1KACA 1UXAA 3N0IA 3QNDA 4ATZA 2J1KC 4XQAA 3L88A 1QIUA 2WBVA 2WGUA 1QHVA 1UXBA 2O39A 2BZUA 2WGTA 3O8EA 2BZVA 2J2JA 4XQBA 1P6AA 4XL8A 2WBWA 3EXWA 1UXEA 3F0YA 3EXVA 2J12A 4K6TA 1H7ZA 4K6WA 1P69A 2W9LC 1NOBA 2QLKA 3CNCA 4WYJA 3BQ4A 4ZDGA 4K6UA 4K6VA 2WSTA
chains in the Genus database with same CATH superfamily

1KNBA 4LIYA 3L89A 1KACA 1UXAA 3N0IA 1KKEA 3QNDA 4GU4A 3ZPFA 4ATZA 4GU3A 3ZPEA 2BT8A 2J1KC 2OJ5A 4XQAA 3L88A 1QIUA 2BSFA 2WBVA 1QHVA 1UXBA 2WGUA 4ODBA 2O39A 2BZUA 2WGTA 3O8EA 2BZVA 3S6XA 2J2JA 2JJLA 4XQBA 1P6AA 4XL8A 2VRSA 2BT7A 2WBWA 3EXWA 1UXEA 3F0YA 3EXVA 2J12A 4K6TA 1H7ZA 4K6WA 1P69A 4CW8A 2W9LC 1NOBA 2QLKA 3EOYA 4K6UA 2VTWA 4D62A 5MHSA 3CNCA 2OJ6A 3BQ4A 4WYJA 4D63A 2IUNA 4ZDGA 2IUMA 4K6VA 4XC5A 2WSTA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1KNB A;  4LIY A;  3L89 A;  1KAC A;  1UXA A;  3N0I A;  3QND A;  4ATZ A;  2J1K C;  4XQA A;  3L88 A;  1QIU A;  2WBV A;  2WGU A;  1QHV A;  1UXB A;  2O39 A;  2BZU A;  2WGT A;  3O8E A;  2BZV A;  2J2J A;  4XQB A;  1P6A A;  4XL8 A;  2WBW A;  3EXW A;  1UXE A;  3F0Y A;  3EXV A;  2J12 A;  4K6T A;  1H7Z A;  4K6W A;  1P69 A;  2W9L C;  1NOB A;  2QLK A;  3CNC A;  4WYJ A;  3BQ4 A;  4ZDG A;  4K6U A;  4K6V A;  2WST A; 
#chains in the Genus database with same CATH topology
 1KNB A;  4LIY A;  3L89 A;  1KAC A;  1UXA A;  3N0I A;  1KKE A;  3QND A;  4GU4 A;  3ZPF A;  4ATZ A;  4GU3 A;  3ZPE A;  2BT8 A;  2J1K C;  2OJ5 A;  4XQA A;  3L88 A;  1QIU A;  2BSF A;  2WBV A;  1QHV A;  1UXB A;  2WGU A;  4ODB A;  2O39 A;  2BZU A;  2WGT A;  3O8E A;  2BZV A;  3S6X A;  2J2J A;  2JJL A;  4XQB A;  1P6A A;  4XL8 A;  2VRS A;  2BT7 A;  2WBW A;  3EXW A;  1UXE A;  3F0Y A;  3EXV A;  2J12 A;  4K6T A;  1H7Z A;  4K6W A;  1P69 A;  4CW8 A;  2W9L C;  1NOB A;  2QLK A;  3EOY A;  4K6U A;  2VTW A;  4D62 A;  5MHS A;  3CNC A;  2OJ6 A;  3BQ4 A;  4WYJ A;  4D63 A;  2IUN A;  4ZDG A;  2IUM A;  4K6V A;  4XC5 A;  2WST A; 
#chains in the Genus database with same CATH homology
 1KNB A;  4LIY A;  3L89 A;  1KAC A;  1UXA A;  3N0I A;  3QND A;  4ATZ A;  2J1K C;  4XQA A;  3L88 A;  1QIU A;  2WBV A;  2WGU A;  1QHV A;  1UXB A;  2O39 A;  2BZU A;  2WGT A;  3O8E A;  2BZV A;  2J2J A;  4XQB A;  1P6A A;  4XL8 A;  2WBW A;  3EXW A;  1UXE A;  3F0Y A;  3EXV A;  2J12 A;  4K6T A;  1H7Z A;  4K6W A;  1P69 A;  2W9L C;  1NOB A;  2QLK A;  3CNC A;  4WYJ A;  3BQ4 A;  4ZDG A;  4K6U A;  4K6V A;  2WST A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4XQAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations