4XQB | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	184
structure length	184
Chain Sequence	DTRTLWTTPDTSPNCTIAQDKDSKLTLVLTKCGSQILANVSLIVVAGKYHIINNKTNPKIKSFTIKLLFNKNGVLLDNSNLGKAYWNFRSGNSNVSTAYEKAIGFMPNLVAYPKPSNSKKYARDIVYGTIYLGGKPDQPAVIKTTFNQETGCEYSITFNFSWSKTYENVEFETTSFTFSYIAQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5d00ca76adecd8c5636aeab1/pdb.gz): 982 ms

reading 184 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

184 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 21 ms

Adding embedded #jmolscript: select ({0:183});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Viral protein
source organism	Human adenovirus 37
publication title	Triazole linker-based trivalent sialic acid inhibitors of adenovirus type 37 infection of human corneal epithelial cells. pubmed doi rcsb
molecule keywords	Fiber
total genus	46
structure length	184
sequence length	184
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2015-01-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00541	Adeno_knob	Adenoviral fibre protein (knob domain)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.90.10	Mainly Beta	Sandwich	Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)	Adenovirus pIV-related, attachment domain	4xqbA00

4ATZA 1QIUA 1P69A 3EXVA 1UXBA 4K6VA 2WGUA 2WBWA 4K6UA 4K6TA 3QNDA 1NOBA 3L88A 2O39A 4ZDGA 2BZVA 4WYJA 1P6AA 3O8EA 2J12A 2W9LC 2WGTA 3F0YA 1H7ZA 4XQAA 2QLKA 3L89A 1UXAA 4K6WA 1KACA 3CNCA 2J2JA 2WBVA 4LIYA 4XQBA 1UXEA 1KNBA 2J1KC 1QHVA 3EXWA 2WSTA 3N0IA 3BQ4A 2BZUA 4XL8A
chains in the Genus database with same CATH superfamily

4ATZA 1KKEA 1QIUA 2OJ6A 1P69A 3EXVA 1UXBA 2BT8A 4K6VA 2WGUA 3ZPFA 4CW8A 2WBWA 2VRSA 4K6UA 4K6TA 2IUMA 1NOBA 3L88A 3QNDA 4XC5A 2O39A 4ZDGA 2BZVA 2VTWA 4ODBA 4GU3A 3EOYA 4D63A 4WYJA 1P6AA 3O8EA 2J12A 2OJ5A 2W9LC 2WGTA 1H7ZA 3F0YA 2IUNA 4XQAA 2QLKA 5MHSA 2BSFA 1UXAA 3L89A 4K6WA 1KACA 3CNCA 2JJLA 3ZPEA 2J2JA 2WBVA 4LIYA 4XQBA 1UXEA 2BT7A 1KNBA 2J1KC 1QHVA 3EXWA 4D62A 4GU4A 2WSTA 3N0IA 3S6XA 3BQ4A 2BZUA 4XL8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4ATZ A;  1QIU A;  1P69 A;  3EXV A;  1UXB A;  4K6V A;  2WGU A;  2WBW A;  4K6U A;  4K6T A;  3QND A;  1NOB A;  3L88 A;  2O39 A;  4ZDG A;  2BZV A;  4WYJ A;  1P6A A;  3O8E A;  2J12 A;  2W9L C;  2WGT A;  3F0Y A;  1H7Z A;  4XQA A;  2QLK A;  3L89 A;  1UXA A;  4K6W A;  1KAC A;  3CNC A;  2J2J A;  2WBV A;  4LIY A;  4XQB A;  1UXE A;  1KNB A;  2J1K C;  1QHV A;  3EXW A;  2WST A;  3N0I A;  3BQ4 A;  2BZU A;  4XL8 A; 
#chains in the Genus database with same CATH topology
 4ATZ A;  1KKE A;  1QIU A;  2OJ6 A;  1P69 A;  3EXV A;  1UXB A;  2BT8 A;  4K6V A;  2WGU A;  3ZPF A;  4CW8 A;  2WBW A;  2VRS A;  4K6U A;  4K6T A;  2IUM A;  1NOB A;  3L88 A;  3QND A;  4XC5 A;  2O39 A;  4ZDG A;  2BZV A;  2VTW A;  4ODB A;  4GU3 A;  3EOY A;  4D63 A;  4WYJ A;  1P6A A;  3O8E A;  2J12 A;  2OJ5 A;  2W9L C;  2WGT A;  1H7Z A;  3F0Y A;  2IUN A;  4XQA A;  2QLK A;  5MHS A;  2BSF A;  1UXA A;  3L89 A;  4K6W A;  1KAC A;  3CNC A;  2JJL A;  3ZPE A;  2J2J A;  2WBV A;  4LIY A;  4XQB A;  1UXE A;  2BT7 A;  1KNB A;  2J1K C;  1QHV A;  3EXW A;  4D62 A;  4GU4 A;  2WST A;  3N0I A;  3S6X A;  3BQ4 A;  2BZU A;  4XL8 A; 
#chains in the Genus database with same CATH homology
 4ATZ A;  1QIU A;  1P69 A;  3EXV A;  1UXB A;  4K6V A;  2WGU A;  2WBW A;  4K6U A;  4K6T A;  3QND A;  1NOB A;  3L88 A;  2O39 A;  4ZDG A;  2BZV A;  4WYJ A;  1P6A A;  3O8E A;  2J12 A;  2W9L C;  2WGT A;  3F0Y A;  1H7Z A;  4XQA A;  2QLK A;  3L89 A;  1UXA A;  4K6W A;  1KAC A;  3CNC A;  2J2J A;  2WBV A;  4LIY A;  4XQB A;  1UXE A;  1KNB A;  2J1K C;  1QHV A;  3EXW A;  2WST A;  3N0I A;  3BQ4 A;  2BZU A;  4XL8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4XQBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations