2O5JD

Crystal structure of the t. thermophilus rnap polymerase elongation complex with the ntp substrate analog
Total Genus 275
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
275
sequence length
1504
structure length
1264
Chain Sequence
KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFGPIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAHIWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGKVKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRKRADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEARRPKAKAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKEAVEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase/dna-rna hybrid
molecule keywords 5'-D(P*CP*CP*CP*TP*GP*TP*CP*TP*GP*GP*CP*GP*TP*TP*CP*GP*CP*GP
publication title Structural basis for substrate loading in bacterial RNA polymerase.
pubmed doi rcsb
total genus 275
structure length 1264
sequence length 1504
chains with identical sequence N
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2006-12-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00623 RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
D PF04983 RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3
D PF04997 RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1
D PF04998 RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5
D PF05000 RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.132.30 Mainly Alpha Orthogonal Bundle Topoisomerase I; Chain A, domain 4 Topoisomerase I; Chain A, domain 4 2o5jD05
1.10.274.100 Mainly Alpha Orthogonal Bundle Enzyme I; Chain A, domain 2 Enzyme I; Chain A, domain 2 2o5jD04
2.20.28.170 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 2o5jD07
2.40.40.70 Mainly Beta Beta Barrel Barwin-like endoglucanases Barwin-like endoglucanases 2o5jD03
1I50A 2O5JD 3HKZA 3GTLA 2E2IA 2JA7A 3GTMA 1IW7D 1TWHA 1YNND 1ZYRD 2A69D 2A68D 2NVYA 3FKIA 4C2MA 1R9TA 3GTOA 2B63A 1K83A 1YNJD 3H0GA 2A6ED 3GTJA 2NVXA 1HQMD 1TWFA 2WB1A 2A6HD 3GTGA 2R92A 2CW0D 3CQZA 1I6VD 2PMZA 3GTKA 1Y1WA 2YU9A 3GTQA 2JA5A 2E2HA 1SMYD 2JA6A 3GTPA 1WCMA 4AYBA 2Y0SA 2R93A 1TWGA 2WAQA 2R7ZA 1Y1VA 4QIWA 1I3QA 1TWAA 2VUMA 1TWCA 2BE5D 1SFOA
chains in the Genus database with same CATH superfamily
1FDOA 2VPZA 2F4QA 4AAYA 1MIUA 1PFWA 4RXNA 4C2MA 2MQAA 5IYDL 4AONB 1TWAL 1W27A 4EJ3A 4AR5A 1JYBA 1B71A 1NXGA 4FGUA 1YK4A 3RZDL 5AN9H 1PQEA 3GTKA 2E2HA 3FDJA 1FHHA 4QIWP 3PIP1 5IP7L 1T6JA 2R92L 3QQ7A 2AQCA 1V9MA 1S2ZA 1VZGA 3HJYB 1TWGL 3H3VM 5AI3A 4ME3A 2PSMC 5C4XL 4KC6A 3SULA 1TWCL 3KYWA 1ZYMA 3GTJA 1ZC1A 3LWQB 4GA5A 3ENGA 4KAWX 2CR8A 5M5XL 1H7VA 4V196 8RXNA 3CQZA 4C5RA 3X2NA 4CEHA 3HOXL 4Y52L 5IP9L 1TGOA 2LPIA 3PIO1 2WAQA 1LPQA 1IU5A 3A44A 1BFYA 1A35A 5MGNA 2JIRA 4JP6A 1EK8A 7RXNA 4C5UA 4C3JL 4AI1A 3SS2A 3X2PA 2E2HL 2JI1A 3O5AA 3HU2A 4AN8A 3MSUA 4FXDA 2JIPA 2V0EA 2B63A 4KDDA 3S1QL 2V45A 1C09A 4DMRA 2PNWA 3LRDA 1WJVA 3TIWA 1Y1WA 5FTJA 4O26A 3TM7B 3K5OA 1K4SA 2JA6A 3GTJL 3DU6A 2NVQL 3S1NL 1SMWA 4A3GL 3B08B 5GAEc 3CQZL 1F4LA 1DD5A 4C6GA 5C9HA 3PO2L 3LWPB 1R49A 5IYCL 1OA7A 1TMOA 3LHPS 4LMOA 4CS0A 2LYIA 3HU3A 1R0JA 1PFVA 1OGYA 1Y4ZA 5GLFA 2B63L 2EZCA 1KQGA 4JAGA 3PLXB 4GA6A 1B2OA 5FTNA 4KLNA 1EH1A 1CZ5A 1Y698 1PT0A 2VPXA 1YK5A 1Y1WL 1SIWA 1SFOA 5GADc 1BRFA 2JA6L 2NAPA 5H1Sc 5C4JL 2Y0NA 5M3FL 1PT1A 2M6PA 3LR6A 1I3QL 1R9TA 3ZG6A 4A3BL 2KI8A 4KODA 3X2HA 1EU1A 1FHMA 3CF2A 1HD5A 4JJOA 4AR4A 5C3EL 3GTGA 2KQAA 3P9AA 4AYBP 2KKDA 1I6HL 1B13A 1ZRPA 1R5ZA 4BXXL 1VCXA 1QCSA 4A3IL 4D7ZB 5MFPA 5MFZA 3NZ4A 1AW8B 1Z92B 2DMRA 1RR8C 2EY4E 2JIMA 5C44L 3K5NA 3QC8A 1R7RA 2B9SB 4NOKA 3SJRA 1K4TA 1SFOL 4X6AL 1RB9A 4QCLA 1QDNA 3M3GA 2X0QA 3J7Z1 3ML1A 2C6BA 4H3TA 2PMZP 4LHLA 2V0FA 1R9TL 1Q8IA 5AI2A 5JSNB 1PFYA 2XJRA 5GLYA 5T5MD 3X2IA 4JCWA 2N1DB 1IROA 4KDLA 2JIQA 1SEUA 2PVXA 4BABA 3GTGL 3S14L 4ZN1B 2MS3A 2YU9L 4OYDB 3FKIA 3X2JA 2KN9A 4Q5GA 1YUZA 5K2ME 3HKZA 2JA7A 2A69D 4IP8A 1DX8A 1R0HA 1VZHA 3X2MA 2K2DA 4ZN3B 5CQGA 4FG2A 1R27A 5C1BA 3X2OA 2AE0X 1RYTA 5EINC 3X2LA 3K57A 3MAQA 2PYAA 5JVH1 2RDVA 4RV0A 4AZDA 1YLEA 1QCVA 1UHEA 1OWCA 5EIOC 5H4UA 3D30A 2ERJA 4BBRL 1ODHA 4FBSA 2BE5D 3K58A 2K3OA 4D3YA 3P8BA 4C5SA 4A93L 3GTOA 4POFA 1G8KA 2PI8A 1IU6A 1T9QA 3M4AA 2PVEA 3P2AA 3B0AB 1YNJD 3FKIL 4KB2A 4KO8A 1QQTA 2JA7L 1H5NA 2DSXA 4BY1L 1LTLA 2MX8A 2MX9A 2V3VA 2HCZX 3LWOB 1H0HA 2PICA 2JA5A 4YWLA 5FTKA 2VPYA 2NVTL 2R7ZA 2FIOA 4V2QA 1T9PA 4Q5VA 1E60A 4V2RA 1I3QA 3QVDA 2M4YA 1R0FA 1BQ9A 1PFUA 2E2IA 4FERA 4L8IA 1T6PA 1IW7D 1ZYRD 2NVYA 1AA6A 1WLFA 4D3ZA 4AHCA 1I50L 3K7AL 1VZIA 4AR3A 2A6HD 3S1ML 3QWZA 1SC7A 4F3EA 3GTOL 3EZAA 1CR5A 4A3KL 3S2DL 4JAEA 3WWNB 2NYDA 3GTPA 2WAQP 2Y0SA 1QYBA 3RZ6A 1Y2MA 2GAEA 5B6CA 3I4NL 4JP7A 2JA5L 4CQ5A 1TL8A 4AHWA 3LR2A 4AI0A 1KQFA 2R7ZL 1WQGA 1YNND 3M4OL 3HOUL 3EZBA 3K59A 4ZM7A 1L8FA 4B8CD 2E2IL 3U44A 1UHDA 3LR8A 3PKJA 4GS7D 1PYUB 1B2JA 1YV1A 4UY81 3DU5A 2XJVA 4A3EL 4CRZA 2NVYL 3LPEB 5EPPA 2HWGA 1IS1A 3IAYA 1R0GA 1A36A 3EZEA 1DVBA 1E61A 5DM71 2R93A 1Q16A 1ISEA 1Y1VA 4QIWA 5M5WL 5IY0A 3PO3L 3MPSA 1VC3B 1WQHA 4C3HL 3NFPI 1LKMA 3GTPL 1E18A 2CKAA 4C3IL 3S15L 2X0PA 1S24A 1K83A 1EZBA 2YUJA 4C2M1 2JI3A 3H0GA 2A6ED 4CEIA 3J7Y1 1E32A 1TWFA 3K5MA 3LWVB 4G6BA 2FIPA 3U4QA 3PZAA 2BH0A 1SMYD 3HOWL 2G5DA 1NH3A 3RZTA 1EZAA 4IP9A 4FYDA 2IV2X 1E8JA 2ENGA 4YWMA 5M3ML 5M5YL 4NOMA 5JVG1 1RDVA 1LKOA 3GTMA 2EZBA 4AI3A 5DM61 2R93L 5JSBB 1Y1VL 1NXEA 3LNLA 4Y7NL 3X2GA 1RWDA 2PJJA 2Z3RB 2EEOB 1Y5IA 5DYGA 2WB1A 4JLRC 3IR7A 3I4ML 4A3CL 1DMSA 3OUGA 3CZBA 2AQLA 3LWRB 1K83L 5C18A 3HAXC 2M4VA 3H0GL 1CZ4A 1WCMA 1WC2A 1TWFL 4L48A 1SMMA 2YIIA 4AHYA 4FFTA 4WFN1 2VUMA 2N3EA 2JA8L 2HROA 4AI2A 2AUSB 4LHNA 5MF6A 1I50A 4BBSL 4A3FL 2HR5A 3RYGA 3WWLA 5MLC9 1PPYA 4POGA 1PQFA 5FTMA 3H9BA 3H97A 1FDIA 3K5LA 1BW3A 4BAAA 2AYJA 3HOVL 4U671 4AHZA 5GAHc 3GTML 4FG4A 4GFQA 1OWBA 1T8IA 3QQCE 2F5JA 3IR6A 2LCQA 3S16L 3PL5A 4AHXA 1T9OA 2LTHA 2E7ZA 5FTLA 3HOYL 3GTKL 5FLML 3HOZL 3HKZP 4AR6A 1YUXA 5IYBL 2O5JD 1WCML 2NYAA 1P7PA 3MQKB 4JADA 4KDIA 2C45A 3DMRA 2VUML 1IRNA 1SMUA 2WB1P 4XGHA 2ZIXA 2HVYC 2J9UB 1PZXA 2CKCA 3PKIA 2PPTA 1CADA 3H99A 1RRJA 4A3ML 4JAFA 4JS7A 2XJUA 4AYBA 1GE9A 2LKMB 3KYVA 2JI2A 4AOKB 1BQ8A 3HJWB 2QL0A 2K3QA 2C6AA 3KYYA 3IR5A 3SUKA 3GTLA 2XJSA 2XJTA 2APOB 2R4GA 1TWHA 1EJ9A 1N10A 3KYLA 4AVRA 3KYXA 3HU1A 5IZ2A 1CAAA 2ERSA 3PWFA 4ENGA 2NVXA 2EZAA 3H9CA 3KYUA 3SUJA 4XXBB 1HQMD 3QQ8A 2VL6A 2G6GA 2LPJA 1BW4A 2VK9A 1PYQA 4E6YA 3M3YL 4TVMA 5GM9A 3JR7A 3S2HL 1E5VA 2PMZA 2YU9A 3GTQA 2L0ZA 2Z3QB 5GLXA 2V3BB 4A3JL 1BE7A 3S1RL 2XJPA 1G8JA 1RYQA 1TWAA 2E2JL 4A3LL 1PQHA 5GAGc 3S17L 2M6OA 3VPBE 1LKPA 1A31A 2K3NA 4KB4A 1DMRA 2A68D 5RXNA 2PJHB 1NNQA 2GMGA 5MLC3 3WVOA 1S3SA 1R0IA 2JIOA 2RFKB 3X2KA 4BY7L 1RDGA 4NOLA 1S30A 5FJ8L 3GTLL 4CRYG 2MP0A 1TWHL 2R92A 2CW0D 2B5ID 1WQFA 1I6VD 4TPUA 2Y0SP 4K9FA 2NVXL 2VPWA 2H12A 5DYIA 5T5ID 6RXNA 1TWGA 3SUMA 2XJQA 3IU3I 3LF9A 3RZOL 4A3DL 1TWCA 1OA9A 2X0OA 3K35A 4NOHA 4CEJA 3GTQL
chains in the Genus database with same CATH topology
1FDOA 2VPZA 2F4QA 4AAYA 1MIUA 4RXNA 4C2MA 2MQAA 4AONB 4EJ3A 4AR5A 1JYBA 1B71A 1NXGA 4FGUA 1YK4A 5AN9H 1PQEA 3GTKA 2E2HA 1FHHA 3PIP1 3QQ7A 1V9MA 1S2ZA 1VZGA 5AI3A 4ME3A 2PSMC 4KC6A 3KYWA 3GTJA 1ZC1A 4GA5A 4KAWX 2CR8A 1H7VA 4V196 8RXNA 3CQZA 4CEHA 1TGOA 2LPIA 3PIO1 2WAQA 1LPQA 1IU5A 3A44A 1BFYA 1A35A 5MGNA 2JIRA 1EK8A 7RXNA 4AI1A 3SS2A 2JI1A 3O5AA 3HU2A 4AN8A 3MSUA 4FXDA 2JIPA 2V0EA 2B63A 4KDDA 2V45A 1C09A 4DMRA 2PNWA 3LRDA 1WJVA 3TIWA 1Y1WA 5FTJA 4O26A 3TM7B 3K5OA 1K4SA 2JA6A 3DU6A 1SMWA 3B08B 5GAEc 1DD5A 5C9HA 1R49A 1TMOA 3LHPS 4LMOA 4CS0A 2LYIA 3HU3A 1R0JA 1Y4ZA 1OGYA 5GLFA 1KQGA 4JAGA 3PLXB 4GA6A 1B2OA 5FTNA 4KLNA 1EH1A 1CZ5A 1Y698 1PT0A 2VPXA 1YK5A 1SIWA 1SFOA 5GADc 1BRFA 2NAPA 5H1Sc 2Y0NA 1PT1A 2M6PA 3LR6A 1R9TA 3ZG6A 2KI8A 4KODA 1EU1A 1FHMA 3CF2A 4AR4A 3GTGA 3P9AA 2KKDA 1B13A 1ZRPA 1R5ZA 1VCXA 1QCSA 4D7ZB 5MFPA 5MFZA 1AW8B 1Z92B 2DMRA 1RR8C 2JIMA 3K5NA 3QC8A 1R7RA 2B9SB 4NOKA 3SJRA 1K4TA 1QDNA 1RB9A 4QCLA 2X0QA 3J7Z1 3ML1A 2C6BA 4H3TA 4LHLA 2V0FA 1Q8IA 5AI2A 5JSNB 2XJRA 5T5MD 2N1DB 1IROA 4KDLA 2JIQA 1SEUA 2PVXA 4ZN1B 2MS3A 4OYDB 3FKIA 2KN9A 4Q5GA 1YUZA 5K2ME 3HKZA 2JA7A 2A69D 4IP8A 1DX8A 1R0HA 1VZHA 2K2DA 4ZN3B 5CQGA 1R27A 2AE0X 1RYTA 5EINC 3K57A 3MAQA 2PYAA 5JVH1 2RDVA 4RV0A 4AZDA 1YLEA 1QCVA 1UHEA 1OWCA 5EIOC 2ERJA 1ODHA 4FBSA 2BE5D 3K58A 2K3OA 4D3YA 3P8BA 3GTOA 4POFA 1G8KA 2PI8A 1IU6A 1T9QA 3M4AA 3P2AA 2PVEA 3B0AB 1YNJD 4KB2A 4KO8A 1H5NA 2DSXA 1LTLA 2MX8A 2MX9A 2V3VA 1H0HA 2PICA 2JA5A 4YWLA 5FTKA 2VPYA 2R7ZA 2FIOA 1T9PA 4Q5VA 1E60A 1I3QA 3QVDA 2M4YA 1R0FA 1BQ9A 2E2IA 4L8IA 1IW7D 1ZYRD 2NVYA 1AA6A 1WLFA 4D3ZA 4AHCA 4AR3A 1VZIA 2A6HD 3QWZA 1SC7A 4F3EA 1CR5A 4JAEA 3WWNB 2NYDA 3GTPA 2Y0SA 1QYBA 3RZ6A 2GAEA 5B6CA 1TL8A 4AHWA 3LR2A 4AI0A 1KQFA 1WQGA 1YNND 3K59A 4B8CD 1UHDA 3U44A 3LR8A 3PKJA 4GS7D 1PYUB 1B2JA 1YV1A 4UY81 3DU5A 2XJVA 4CRZA 3LPEB 5EPPA 1IS1A 3IAYA 1R0GA 1A36A 1DVBA 1E61A 5DM71 2R93A 1Q16A 1ISEA 1Y1VA 4QIWA 5IY0A 3MPSA 1VC3B 1WQHA 3NFPI 1LKMA 1E18A 2CKAA 2X0PA 1S24A 1K83A 2YUJA 2JI3A 3H0GA 2A6ED 4CEIA 3J7Y1 1E32A 1TWFA 3K5MA 4G6BA 2FIPA 3U4QA 3PZAA 1SMYD 2G5DA 1NH3A 3RZTA 4IP9A 4FYDA 2IV2X 1E8JA 4YWMA 4NOMA 5JVG1 1RDVA 1LKOA 3GTMA 4AI3A 5DM61 5C1BA 5JSBB 1NXEA 3LNLA 1RWDA 2PJJA 2Z3RB 2EEOB 1Y5IA 5DYGA 2WB1A 4JLRC 3IR7A 1DMSA 3OUGA 3CZBA 2AQLA 5C18A 2M4VA 1CZ4A 1WCMA 1SMMA 4AHYA 4WFN1 2VUMA 2N3EA 4AI2A 4LHNA 5MF6A 1I50A 2HR5A 3RYGA 3WWLA 5MLC9 1PPYA 4POGA 1PQFA 5FTMA 1FDIA 3K5LA 2AYJA 4U671 4AHZA 5GAHc 4GFQA 1OWBA 1T8IA 3QQCE 2F5JA 3IR6A 2LCQA 4AHXA 1T9OA 2LTHA 2E7ZA 5FTLA 4AR6A 1YUXA 2O5JD 2NYAA 4JADA 4KDIA 2C45A 3DMRA 1IRNA 1SMUA 4XGHA 2ZIXA 2J9UB 2CKCA 3PKIA 2PPTA 1CADA 1RRJA 4JAFA 2XJUA 4AYBA 1GE9A 2LKMB 3KYVA 2JI2A 4AOKB 1BQ8A 2QL0A 2K3QA 2C6AA 3KYYA 3IR5A 3GTLA 2XJSA 2XJTA 2R4GA 1TWHA 1EJ9A 3KYLA 3KYXA 3HU1A 5IZ2A 1CAAA 2ERSA 3PWFA 2NVXA 3KYUA 4XXBB 1HQMD 3QQ8A 2VL6A 2G6GA 2LPJA 2VK9A 1PYQA 4E6YA 4TVMA 1E5VA 2PMZA 2YU9A 3GTQA 2L0ZA 2Z3QB 2V3BB 1BE7A 2XJPA 1G8JA 1RYQA 1TWAA 1PQHA 5GAGc 2M6OA 3VPBE 1LKPA 1A31A 2K3NA 4KB4A 1DMRA 2A68D 5RXNA 2PJHB 1NNQA 2GMGA 5MLC3 3WVOA 1S3SA 1R0IA 2JIOA 1RDGA 4NOLA 1S30A 4CRYG 2R92A 2CW0D 2B5ID 1WQFA 1I6VD 4TPUA 4K9FA 2VPWA 2H12A 5DYIA 5T5ID 6RXNA 1TWGA 2XJQA 3IU3I 3LF9A 1TWCA 2X0OA 3K35A 4NOHA 4CEJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1I50 A;  2O5J D;  3HKZ A;  3GTL A;  2E2I A;  2JA7 A;  3GTM A;  1IW7 D;  1TWH A;  1YNN D;  1ZYR D;  2A69 D;  2A68 D;  2NVY A;  3FKI A;  4C2M A;  1R9T A;  3GTO A;  2B63 A;  1K83 A;  1YNJ D;  3H0G A;  2A6E D;  3GTJ A;  2NVX A;  1HQM D;  1TWF A;  2WB1 A;  2A6H D;  3GTG A;  2R92 A;  2CW0 D;  3CQZ A;  1I6V D;  2PMZ A;  3GTK A;  1Y1W A;  2YU9 A;  3GTQ A;  2JA5 A;  2E2H A;  1SMY D;  2JA6 A;  3GTP A;  1WCM A;  4AYB A;  2Y0S A;  2R93 A;  1TWG A;  2WAQ A;  2R7Z A;  1Y1V A;  4QIW A;  1I3Q A;  1TWA A;  2VUM A;  1TWC A;  2BE5 D;  1SFO A; 
#chains in the Genus database with same CATH topology
 1FDO A;  2VPZ A;  2F4Q A;  4AAY A;  1MIU A;  1PFW A;  4RXN A;  4C2M A;  2MQA A;  5IYD L;  4AON B;  1TWA L;  1W27 A;  4EJ3 A;  4AR5 A;  1JYB A;  1B71 A;  1NXG A;  4FGU A;  1YK4 A;  3RZD L;  5AN9 H;  1PQE A;  3GTK A;  2E2H A;  3FDJ A;  1FHH A;  4QIW P;  3PIP 1;  5IP7 L;  1T6J A;  2R92 L;  3QQ7 A;  2AQC A;  1V9M A;  1S2Z A;  1VZG A;  3HJY B;  1TWG L;  3H3V M;  5AI3 A;  4ME3 A;  2PSM C;  5C4X L;  4KC6 A;  3SUL A;  1TWC L;  3KYW A;  1ZYM A;  3GTJ A;  1ZC1 A;  3LWQ B;  4GA5 A;  3ENG A;  4KAW X;  2CR8 A;  5M5X L;  1H7V A;  4V19 6;  8RXN A;  3CQZ A;  4C5R A;  3X2N A;  4CEH A;  3HOX L;  4Y52 L;  5IP9 L;  1TGO A;  2LPI A;  3PIO 1;  2WAQ A;  1LPQ A;  1IU5 A;  3A44 A;  1BFY A;  1A35 A;  5MGN A;  2JIR A;  4JP6 A;  1EK8 A;  7RXN A;  4C5U A;  4C3J L;  4AI1 A;  3SS2 A;  3X2P A;  2E2H L;  2JI1 A;  3O5A A;  3HU2 A;  4AN8 A;  3MSU A;  4FXD A;  2JIP A;  2V0E A;  2B63 A;  4KDD A;  3S1Q L;  2V45 A;  1C09 A;  4DMR A;  2PNW A;  3LRD A;  1WJV A;  3TIW A;  1Y1W A;  5FTJ A;  4O26 A;  3TM7 B;  3K5O A;  1K4S A;  2JA6 A;  3GTJ L;  3DU6 A;  2NVQ L;  3S1N L;  1SMW A;  4A3G L;  3B08 B;  5GAE c;  3CQZ L;  1F4L A;  1DD5 A;  4C6G A;  5C9H A;  3PO2 L;  3LWP B;  1R49 A;  5IYC L;  1OA7 A;  1TMO A;  3LHP S;  4LMO A;  4CS0 A;  2LYI A;  3HU3 A;  1R0J A;  1PFV A;  1OGY A;  1Y4Z A;  5GLF A;  2B63 L;  2EZC A;  1KQG A;  4JAG A;  3PLX B;  4GA6 A;  1B2O A;  5FTN A;  4KLN A;  1EH1 A;  1CZ5 A;  1Y69 8;  1PT0 A;  2VPX A;  1YK5 A;  1Y1W L;  1SIW A;  1SFO A;  5GAD c;  1BRF A;  2JA6 L;  2NAP A;  5H1S c;  5C4J L;  2Y0N A;  5M3F L;  1PT1 A;  2M6P A;  3LR6 A;  1I3Q L;  1R9T A;  3ZG6 A;  4A3B L;  2KI8 A;  4KOD A;  3X2H A;  1EU1 A;  1FHM A;  3CF2 A;  1HD5 A;  4JJO A;  4AR4 A;  5C3E L;  3GTG A;  2KQA A;  3P9A A;  4AYB P;  2KKD A;  1I6H L;  1B13 A;  1ZRP A;  1R5Z A;  4BXX L;  1VCX A;  1QCS A;  4A3I L;  4D7Z B;  5MFP A;  5MFZ A;  3NZ4 A;  1AW8 B;  1Z92 B;  2DMR A;  1RR8 C;  2EY4 E;  2JIM A;  5C44 L;  3K5N A;  3QC8 A;  1R7R A;  2B9S B;  4NOK A;  3SJR A;  1K4T A;  1SFO L;  4X6A L;  1RB9 A;  4QCL A;  1QDN A;  3M3G A;  2X0Q A;  3J7Z 1;  3ML1 A;  2C6B A;  4H3T A;  2PMZ P;  4LHL A;  2V0F A;  1R9T L;  1Q8I A;  5AI2 A;  5JSN B;  1PFY A;  2XJR A;  5GLY A;  5T5M D;  3X2I A;  4JCW A;  2N1D B;  1IRO A;  4KDL A;  2JIQ A;  1SEU A;  2PVX A;  4BAB A;  3GTG L;  3S14 L;  4ZN1 B;  2MS3 A;  2YU9 L;  4OYD B;  3FKI A;  3X2J A;  2KN9 A;  4Q5G A;  1YUZ A;  5K2M E;  3HKZ A;  2JA7 A;  2A69 D;  4IP8 A;  1DX8 A;  1R0H A;  1VZH A;  3X2M A;  2K2D A;  4ZN3 B;  5CQG A;  4FG2 A;  1R27 A;  5C1B A;  3X2O A;  2AE0 X;  1RYT A;  5EIN C;  3X2L A;  3K57 A;  3MAQ A;  2PYA A;  5JVH 1;  2RDV A;  4RV0 A;  4AZD A;  1YLE A;  1QCV A;  1UHE A;  1OWC A;  5EIO C;  5H4U A;  3D30 A;  2ERJ A;  4BBR L;  1ODH A;  4FBS A;  2BE5 D;  3K58 A;  2K3O A;  4D3Y A;  3P8B A;  4C5S A;  4A93 L;  3GTO A;  4POF A;  1G8K A;  2PI8 A;  1IU6 A;  1T9Q A;  3M4A A;  2PVE A;  3P2A A;  3B0A B;  1YNJ D;  3FKI L;  4KB2 A;  4KO8 A;  1QQT A;  2JA7 L;  1H5N A;  2DSX A;  4BY1 L;  1LTL A;  2MX8 A;  2MX9 A;  2V3V A;  2HCZ X;  3LWO B;  1H0H A;  2PIC A;  2JA5 A;  4YWL A;  5FTK A;  2VPY A;  2NVT L;  2R7Z A;  2FIO A;  4V2Q A;  1T9P A;  4Q5V A;  1E60 A;  4V2R A;  1I3Q A;  3QVD A;  2M4Y A;  1R0F A;  1BQ9 A;  1PFU A;  2E2I A;  4FER A;  4L8I A;  1T6P A;  1IW7 D;  1ZYR D;  2NVY A;  1AA6 A;  1WLF A;  4D3Z A;  4AHC A;  1I50 L;  3K7A L;  1VZI A;  4AR3 A;  2A6H D;  3S1M L;  3QWZ A;  1SC7 A;  4F3E A;  3GTO L;  3EZA A;  1CR5 A;  4A3K L;  3S2D L;  4JAE A;  3WWN B;  2NYD A;  3GTP A;  2WAQ P;  2Y0S A;  1QYB A;  3RZ6 A;  1Y2M A;  2GAE A;  5B6C A;  3I4N L;  4JP7 A;  2JA5 L;  4CQ5 A;  1TL8 A;  4AHW A;  3LR2 A;  4AI0 A;  1KQF A;  2R7Z L;  1WQG A;  1YNN D;  3M4O L;  3HOU L;  3EZB A;  3K59 A;  4ZM7 A;  1L8F A;  4B8C D;  2E2I L;  3U44 A;  1UHD A;  3LR8 A;  3PKJ A;  4GS7 D;  1PYU B;  1B2J A;  1YV1 A;  4UY8 1;  3DU5 A;  2XJV A;  4A3E L;  4CRZ A;  2NVY L;  3LPE B;  5EPP A;  2HWG A;  1IS1 A;  3IAY A;  1R0G A;  1A36 A;  3EZE A;  1DVB A;  1E61 A;  5DM7 1;  2R93 A;  1Q16 A;  1ISE A;  1Y1V A;  4QIW A;  5M5W L;  5IY0 A;  3PO3 L;  3MPS A;  1VC3 B;  1WQH A;  4C3H L;  3NFP I;  1LKM A;  3GTP L;  1E18 A;  2CKA A;  4C3I L;  3S15 L;  2X0P A;  1S24 A;  1K83 A;  1EZB A;  2YUJ A;  4C2M 1;  2JI3 A;  3H0G A;  2A6E D;  4CEI A;  3J7Y 1;  1E32 A;  1TWF A;  3K5M A;  3LWV B;  4G6B A;  2FIP A;  3U4Q A;  3PZA A;  2BH0 A;  1SMY D;  3HOW L;  2G5D A;  1NH3 A;  3RZT A;  1EZA A;  4IP9 A;  4FYD A;  2IV2 X;  1E8J A;  2ENG A;  4YWM A;  5M3M L;  5M5Y L;  4NOM A;  5JVG 1;  1RDV A;  1LKO A;  3GTM A;  2EZB A;  4AI3 A;  5DM6 1;  2R93 L;  5JSB B;  1Y1V L;  1NXE A;  3LNL A;  4Y7N L;  3X2G A;  1RWD A;  2PJJ A;  2Z3R B;  2EEO B;  1Y5I A;  5DYG A;  2WB1 A;  4JLR C;  3IR7 A;  3I4M L;  4A3C L;  1DMS A;  3OUG A;  3CZB A;  2AQL A;  3LWR B;  1K83 L;  5C18 A;  3HAX C;  2M4V A;  3H0G L;  1CZ4 A;  1WCM A;  1WC2 A;  1TWF L;  4L48 A;  1SMM A;  2YII A;  4AHY A;  4FFT A;  4WFN 1;  2VUM A;  2N3E A;  2JA8 L;  2HRO A;  4AI2 A;  2AUS B;  4LHN A;  5MF6 A;  1I50 A;  4BBS L;  4A3F L;  2HR5 A;  3RYG A;  3WWL A;  5MLC 9;  1PPY A;  4POG A;  1PQF A;  5FTM A;  3H9B A;  3H97 A;  1FDI A;  3K5L A;  1BW3 A;  4BAA A;  2AYJ A;  3HOV L;  4U67 1;  4AHZ A;  5GAH c;  3GTM L;  4FG4 A;  4GFQ A;  1OWB A;  1T8I A;  3QQC E;  2F5J A;  3IR6 A;  2LCQ A;  3S16 L;  3PL5 A;  4AHX A;  1T9O A;  2LTH A;  2E7Z A;  5FTL A;  3HOY L;  3GTK L;  5FLM L;  3HOZ L;  3HKZ P;  4AR6 A;  1YUX A;  5IYB L;  2O5J D;  1WCM L;  2NYA A;  1P7P A;  3MQK B;  4JAD A;  4KDI A;  2C45 A;  3DMR A;  2VUM L;  1IRN A;  1SMU A;  2WB1 P;  4XGH A;  2ZIX A;  2HVY C;  2J9U B;  1PZX A;  2CKC A;  3PKI A;  2PPT A;  1CAD A;  3H99 A;  1RRJ A;  4A3M L;  4JAF A;  4JS7 A;  2XJU A;  4AYB A;  1GE9 A;  2LKM B;  3KYV A;  2JI2 A;  4AOK B;  1BQ8 A;  3HJW B;  2QL0 A;  2K3Q A;  2C6A A;  3KYY A;  3IR5 A;  3SUK A;  3GTL A;  2XJS A;  2XJT A;  2APO B;  2R4G A;  1TWH A;  1EJ9 A;  1N10 A;  3KYL A;  4AVR A;  3KYX A;  3HU1 A;  5IZ2 A;  1CAA A;  2ERS A;  3PWF A;  4ENG A;  2NVX A;  2EZA A;  3H9C A;  3KYU A;  3SUJ A;  4XXB B;  1HQM D;  3QQ8 A;  2VL6 A;  2G6G A;  2LPJ A;  1BW4 A;  2VK9 A;  1PYQ A;  4E6Y A;  3M3Y L;  4TVM A;  5GM9 A;  3JR7 A;  3S2H L;  1E5V A;  2PMZ A;  2YU9 A;  3GTQ A;  2L0Z A;  2Z3Q B;  5GLX A;  2V3B B;  4A3J L;  1BE7 A;  3S1R L;  2XJP A;  1G8J A;  1RYQ A;  1TWA A;  2E2J L;  4A3L L;  1PQH A;  5GAG c;  3S17 L;  2M6O A;  3VPB E;  1LKP A;  1A31 A;  2K3N A;  4KB4 A;  1DMR A;  2A68 D;  5RXN A;  2PJH B;  1NNQ A;  2GMG A;  5MLC 3;  3WVO A;  1S3S A;  1R0I A;  2JIO A;  2RFK B;  3X2K A;  4BY7 L;  1RDG A;  4NOL A;  1S30 A;  5FJ8 L;  3GTL L;  4CRY G;  2MP0 A;  1TWH L;  2R92 A;  2CW0 D;  2B5I D;  1WQF A;  1I6V D;  4TPU A;  2Y0S P;  4K9F A;  2NVX L;  2VPW A;  2H12 A;  5DYI A;  5T5I D;  6RXN A;  1TWG A;  3SUM A;  2XJQ A;  3IU3 I;  3LF9 A;  3RZO L;  4A3D L;  1TWC A;  1OA9 A;  2X0O A;  3K35 A;  4NOH A;  4CEJ A;  3GTQ L; 
#chains in the Genus database with same CATH homology
 1FDO A;  2VPZ A;  2F4Q A;  4AAY A;  1MIU A;  4RXN A;  4C2M A;  2MQA A;  4AON B;  4EJ3 A;  4AR5 A;  1JYB A;  1B71 A;  1NXG A;  4FGU A;  1YK4 A;  5AN9 H;  1PQE A;  3GTK A;  2E2H A;  1FHH A;  3PIP 1;  3QQ7 A;  1V9M A;  1S2Z A;  1VZG A;  5AI3 A;  4ME3 A;  2PSM C;  4KC6 A;  3KYW A;  3GTJ A;  1ZC1 A;  4GA5 A;  4KAW X;  2CR8 A;  1H7V A;  4V19 6;  8RXN A;  3CQZ A;  4CEH A;  1TGO A;  2LPI A;  3PIO 1;  2WAQ A;  1LPQ A;  1IU5 A;  3A44 A;  1BFY A;  1A35 A;  5MGN A;  2JIR A;  1EK8 A;  7RXN A;  4AI1 A;  3SS2 A;  2JI1 A;  3O5A A;  3HU2 A;  4AN8 A;  3MSU A;  4FXD A;  2JIP A;  2V0E A;  2B63 A;  4KDD A;  2V45 A;  1C09 A;  4DMR A;  2PNW A;  3LRD A;  1WJV A;  3TIW A;  1Y1W A;  5FTJ A;  4O26 A;  3TM7 B;  3K5O A;  1K4S A;  2JA6 A;  3DU6 A;  1SMW A;  3B08 B;  5GAE c;  1DD5 A;  5C9H A;  1R49 A;  1TMO A;  3LHP S;  4LMO A;  4CS0 A;  2LYI A;  3HU3 A;  1R0J A;  1Y4Z A;  1OGY A;  5GLF A;  1KQG A;  4JAG A;  3PLX B;  4GA6 A;  1B2O A;  5FTN A;  4KLN A;  1EH1 A;  1CZ5 A;  1Y69 8;  1PT0 A;  2VPX A;  1YK5 A;  1SIW A;  1SFO A;  5GAD c;  1BRF A;  2NAP A;  5H1S c;  2Y0N A;  1PT1 A;  2M6P A;  3LR6 A;  1R9T A;  3ZG6 A;  2KI8 A;  4KOD A;  1EU1 A;  1FHM A;  3CF2 A;  4AR4 A;  3GTG A;  3P9A A;  2KKD A;  1B13 A;  1ZRP A;  1R5Z A;  1VCX A;  1QCS A;  4D7Z B;  5MFP A;  5MFZ A;  1AW8 B;  1Z92 B;  2DMR A;  1RR8 C;  2JIM A;  3K5N A;  3QC8 A;  1R7R A;  2B9S B;  4NOK A;  3SJR A;  1K4T A;  1QDN A;  1RB9 A;  4QCL A;  2X0Q A;  3J7Z 1;  3ML1 A;  2C6B A;  4H3T A;  4LHL A;  2V0F A;  1Q8I A;  5AI2 A;  5JSN B;  2XJR A;  5T5M D;  2N1D B;  1IRO A;  4KDL A;  2JIQ A;  1SEU A;  2PVX A;  4ZN1 B;  2MS3 A;  4OYD B;  3FKI A;  2KN9 A;  4Q5G A;  1YUZ A;  5K2M E;  3HKZ A;  2JA7 A;  2A69 D;  4IP8 A;  1DX8 A;  1R0H A;  1VZH A;  2K2D A;  4ZN3 B;  5CQG A;  1R27 A;  2AE0 X;  1RYT A;  5EIN C;  3K57 A;  3MAQ A;  2PYA A;  5JVH 1;  2RDV A;  4RV0 A;  4AZD A;  1YLE A;  1QCV A;  1UHE A;  1OWC A;  5EIO C;  2ERJ A;  1ODH A;  4FBS A;  2BE5 D;  3K58 A;  2K3O A;  4D3Y A;  3P8B A;  3GTO A;  4POF A;  1G8K A;  2PI8 A;  1IU6 A;  1T9Q A;  3M4A A;  3P2A A;  2PVE A;  3B0A B;  1YNJ D;  4KB2 A;  4KO8 A;  1H5N A;  2DSX A;  1LTL A;  2MX8 A;  2MX9 A;  2V3V A;  1H0H A;  2PIC A;  2JA5 A;  4YWL A;  5FTK A;  2VPY A;  2R7Z A;  2FIO A;  1T9P A;  4Q5V A;  1E60 A;  1I3Q A;  3QVD A;  2M4Y A;  1R0F A;  1BQ9 A;  2E2I A;  4L8I A;  1IW7 D;  1ZYR D;  2NVY A;  1AA6 A;  1WLF A;  4D3Z A;  4AHC A;  4AR3 A;  1VZI A;  2A6H D;  3QWZ A;  1SC7 A;  4F3E A;  1CR5 A;  4JAE A;  3WWN B;  2NYD A;  3GTP A;  2Y0S A;  1QYB A;  3RZ6 A;  2GAE A;  5B6C A;  1TL8 A;  4AHW A;  3LR2 A;  4AI0 A;  1KQF A;  1WQG A;  1YNN D;  3K59 A;  4B8C D;  1UHD A;  3U44 A;  3LR8 A;  3PKJ A;  4GS7 D;  1PYU B;  1B2J A;  1YV1 A;  4UY8 1;  3DU5 A;  2XJV A;  4CRZ A;  3LPE B;  5EPP A;  1IS1 A;  3IAY A;  1R0G A;  1A36 A;  1DVB A;  1E61 A;  5DM7 1;  2R93 A;  1Q16 A;  1ISE A;  1Y1V A;  4QIW A;  5IY0 A;  3MPS A;  1VC3 B;  1WQH A;  3NFP I;  1LKM A;  1E18 A;  2CKA A;  2X0P A;  1S24 A;  1K83 A;  2YUJ A;  2JI3 A;  3H0G A;  2A6E D;  4CEI A;  3J7Y 1;  1E32 A;  1TWF A;  3K5M A;  4G6B A;  2FIP A;  3U4Q A;  3PZA A;  1SMY D;  2G5D A;  1NH3 A;  3RZT A;  4IP9 A;  4FYD A;  2IV2 X;  1E8J A;  4YWM A;  4NOM A;  5JVG 1;  1RDV A;  1LKO A;  3GTM A;  4AI3 A;  5DM6 1;  5C1B A;  5JSB B;  1NXE A;  3LNL A;  1RWD A;  2PJJ A;  2Z3R B;  2EEO B;  1Y5I A;  5DYG A;  2WB1 A;  4JLR C;  3IR7 A;  1DMS A;  3OUG A;  3CZB A;  2AQL A;  5C18 A;  2M4V A;  1CZ4 A;  1WCM A;  1SMM A;  4AHY A;  4WFN 1;  2VUM A;  2N3E A;  4AI2 A;  4LHN A;  5MF6 A;  1I50 A;  2HR5 A;  3RYG A;  3WWL A;  5MLC 9;  1PPY A;  4POG A;  1PQF A;  5FTM A;  1FDI A;  3K5L A;  2AYJ A;  4U67 1;  4AHZ A;  5GAH c;  4GFQ A;  1OWB A;  1T8I A;  3QQC E;  2F5J A;  3IR6 A;  2LCQ A;  4AHX A;  1T9O A;  2LTH A;  2E7Z A;  5FTL A;  4AR6 A;  1YUX A;  2O5J D;  2NYA A;  4JAD A;  4KDI A;  2C45 A;  3DMR A;  1IRN A;  1SMU A;  4XGH A;  2ZIX A;  2J9U B;  2CKC A;  3PKI A;  2PPT A;  1CAD A;  1RRJ A;  4JAF A;  2XJU A;  4AYB A;  1GE9 A;  2LKM B;  3KYV A;  2JI2 A;  4AOK B;  1BQ8 A;  2QL0 A;  2K3Q A;  2C6A A;  3KYY A;  3IR5 A;  3GTL A;  2XJS A;  2XJT A;  2R4G A;  1TWH A;  1EJ9 A;  3KYL A;  3KYX A;  3HU1 A;  5IZ2 A;  1CAA A;  2ERS A;  3PWF A;  2NVX A;  3KYU A;  4XXB B;  1HQM D;  3QQ8 A;  2VL6 A;  2G6G A;  2LPJ A;  2VK9 A;  1PYQ A;  4E6Y A;  4TVM A;  1E5V A;  2PMZ A;  2YU9 A;  3GTQ A;  2L0Z A;  2Z3Q B;  2V3B B;  1BE7 A;  2XJP A;  1G8J A;  1RYQ A;  1TWA A;  1PQH A;  5GAG c;  2M6O A;  3VPB E;  1LKP A;  1A31 A;  2K3N A;  4KB4 A;  1DMR A;  2A68 D;  5RXN A;  2PJH B;  1NNQ A;  2GMG A;  5MLC 3;  3WVO A;  1S3S A;  1R0I A;  2JIO A;  1RDG A;  4NOL A;  1S30 A;  4CRY G;  2R92 A;  2CW0 D;  2B5I D;  1WQF A;  1I6V D;  4TPU A;  4K9F A;  2VPW A;  2H12 A;  5DYI A;  5T5I D;  6RXN A;  1TWG A;  2XJQ A;  3IU3 I;  3LF9 A;  1TWC A;  2X0O A;  3K35 A;  4NOH A;  4CEJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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