The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
25
|
sequence length |
107
|
structure length |
107
|
Chain Sequence |
APKAPADGLKMEATKQPVVFNHSTHKSVKCGDCHHPVNGKEDYRKCGTAGCHDSMDKKDKSAKGYYHVMHDKNTKFKSCVGCHVEVAGADAAKKKDLTGCKKSKCHE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Effects of amino acid substitution on three-dimensional structure: an X-ray analysis of cytochrome c3 from Desulfovibrio vulgaris Hildenborough at 2 A resolution.
pubmed rcsb |
| molecule keywords |
CYTOCHROME C3
|
| molecule tags |
Electron transport
|
| source organism |
Desulfovibrio vulgaris
|
| total genus |
25
|
| structure length |
107
|
| sequence length |
107
|
| ec nomenclature | |
| pdb deposition date | 1993-09-29 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Cytochrome C3 | Cytochrome C3 |
#chains in the Genus database with same CATH superfamily 2YYX A; 1J0P A; 3CAR A; 3H33 A; 1A2I A; 2BQ4 A; 3SJ0 X; 1GM4 A; 1CZJ A; 2A3P A; 2A3M A; 3BXU A; 2CVC A; 2LZZ A; 1L3O A; 1GMB A; 3H4N A; 4HBF A; 3OV0 A; 1UPD A; 1H29 A; 2MZ9 A; 2CTH A; 4HAJ A; 3SEL X; 1F22 A; 2EWK A; 1UP9 A; 3OUE A; 1LM2 A; 1EHJ A; 1I77 A; 2KSU A; 2EWI A; 1GWS A; 2CY3 A; 1OS6 A; 2LDO A; 4HDL A; 1Z1N X; 4HB6 A; 3H34 A; 1QN1 A; 1HH5 A; 1OFW A; 4HC3 A; 1KWJ A; 3CYR A; 2CYM A; 1J0O A; 1W7O A; 3SJ1 X; 2E84 A; 1OFY A; 1WR5 A; 1MDV A; 3CAO A; 1NEW A; 4HB8 A; 2FFN A; 2BPN A; 1QN0 A; 1WAD A; 2N91 A; 2KMY A; 3SJ4 X; 1DUW A; 1GYO A; 19HC A; 1AQE A; 1IT1 A; 2YXC A; 2YYW A; 2CDV A; 3OUQ A; 1RWJ A; 2Z47 A; 2EWU A; #chains in the Genus database with same CATH topology 2YYX A; 1J0P A; 3CAR A; 3H33 A; 1A2I A; 2BQ4 A; 3SJ0 X; 1GM4 A; 1CZJ A; 2A3P A; 2A3M A; 3BXU A; 2CVC A; 2LZZ A; 1L3O A; 1GMB A; 3H4N A; 4HBF A; 3OV0 A; 1UPD A; 1H29 A; 2MZ9 A; 2CTH A; 4HAJ A; 3SEL X; 1F22 A; 2EWK A; 1UP9 A; 3OUE A; 1LM2 A; 1EHJ A; 1I77 A; 2KSU A; 2EWI A; 1GWS A; 2CY3 A; 1OS6 A; 2LDO A; 4HDL A; 1Z1N X; 4HB6 A; 3H34 A; 1QN1 A; 1HH5 A; 1OFW A; 4HC3 A; 1KWJ A; 3CYR A; 2CYM A; 1J0O A; 1W7O A; 3SJ1 X; 2E84 A; 1OFY A; 1WR5 A; 1MDV A; 3CAO A; 1NEW A; 4HB8 A; 2FFN A; 2BPN A; 1QN0 A; 1WAD A; 2N91 A; 2KMY A; 3SJ4 X; 1DUW A; 1GYO A; 19HC A; 1AQE A; 1IT1 A; 2YXC A; 2YYW A; 2CDV A; 3OUQ A; 1RWJ A; 2Z47 A; 2EWU A; #chains in the Genus database with same CATH homology 2YYX A; 1J0P A; 3CAR A; 3H33 A; 1A2I A; 2BQ4 A; 3SJ0 X; 1GM4 A; 1CZJ A; 2A3P A; 2A3M A; 3BXU A; 2CVC A; 2LZZ A; 1L3O A; 1GMB A; 3H4N A; 4HBF A; 3OV0 A; 1UPD A; 1H29 A; 2MZ9 A; 2CTH A; 4HAJ A; 3SEL X; 1F22 A; 2EWK A; 1UP9 A; 3OUE A; 1LM2 A; 1EHJ A; 1I77 A; 2KSU A; 2EWI A; 1GWS A; 2CY3 A; 1OS6 A; 2LDO A; 4HDL A; 1Z1N X; 4HB6 A; 3H34 A; 1QN1 A; 1HH5 A; 1OFW A; 4HC3 A; 1KWJ A; 3CYR A; 2CYM A; 1J0O A; 1W7O A; 3SJ1 X; 2E84 A; 1OFY A; 1WR5 A; 1MDV A; 3CAO A; 1NEW A; 4HB8 A; 2FFN A; 2BPN A; 1QN0 A; 1WAD A; 2N91 A; 2KMY A; 3SJ4 X; 1DUW A; 1GYO A; 19HC A; 1AQE A; 1IT1 A; 2YXC A; 2YYW A; 2CDV A; 3OUQ A; 1RWJ A; 2Z47 A; 2EWU A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
