2YYWA

The f20m mutant of tetraheme cytochrome c3 from desulfovibrio vulgaris miyazaki f
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
107
structure length
107
Chain Sequence
APKAPADGLKMDKTKQPVVMNHSTHKAVKCGDCHHPVNGKEDYQKCATAGCHDNMDKKDKSAKGYYHAMHDKGTKFKSCVGCHLETAGADAAKKKELTGCKGSKCHS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of Noncoordinated Aromatic Residue Mutants in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
rcsb
molecule tags Electron transport
source organism Desulfovibrio vulgaris str. 'miyazaki f'
molecule keywords Cytochrome c3
total genus 23
structure length 107
sequence length 107
ec nomenclature
pdb deposition date 2007-05-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.10.10 Alpha Beta Alpha-Beta Complex Cytochrome C3 Cytochrome C3 2yywA00
4HAJA 1MDVA 2CTHA 3H4NA 3H34A 1KWJA 1QN1A 1F22A 2CVCA 19HCA 1J0PA 1LM2A 3OV0A 2EWUA 2MZ9A 1A2IA 1HH5A 2BPNA 2KMYA 2A3PA 2A3MA 3SJ0X 1GM4A 3SJ4X 3SJ1X 1H29A 2LDOA 1GYOA 3CAOA 2CDVA 2N91A 1OS6A 2EWKA 2YYWA 1GWSA 1IT1A 3CYRA 4HDLA 2YYXA 2CY3A 1UP9A 3CARA 1W7OA 1L3OA 1OFWA 1RWJA 4HC3A 2CYMA 2Z47A 3OUQA 2YXCA 2FFNA 1DUWA 2EWIA 4HB8A 2BQ4A 1CZJA 1EHJA 1UPDA 3H33A 1WR5A 1NEWA 1WADA 1Z1NX 1I77A 1GMBA 1J0OA 4HB6A 4HBFA 3OUEA 1AQEA 2LZZA 1QN0A 2E84A 1OFYA 3SELX 2KSUA 3BXUA
chains in the Genus database with same CATH superfamily
4HAJA 1MDVA 2CTHA 3H4NA 3H34A 1KWJA 1QN1A 1F22A 2CVCA 19HCA 1J0PA 1LM2A 3OV0A 2EWUA 2MZ9A 1A2IA 1HH5A 2BPNA 2KMYA 2A3PA 2A3MA 3SJ0X 1GM4A 3SJ4X 3SJ1X 1H29A 2LDOA 1GYOA 3CAOA 2CDVA 2N91A 1OS6A 2EWKA 2YYWA 1GWSA 1IT1A 3CYRA 4HDLA 2YYXA 2CY3A 1UP9A 3CARA 1W7OA 1L3OA 1OFWA 1RWJA 4HC3A 2CYMA 2Z47A 3OUQA 2YXCA 2FFNA 1DUWA 2EWIA 4HB8A 2BQ4A 1CZJA 1EHJA 1UPDA 3H33A 1WR5A 1NEWA 1WADA 1Z1NX 1I77A 1GMBA 1J0OA 4HB6A 4HBFA 3OUEA 1AQEA 2LZZA 1QN0A 2E84A 1OFYA 3SELX 2KSUA 3BXUA
chains in the Genus database with same CATH topology
4HAJA 1MDVA 2CTHA 3H4NA 3H34A 1KWJA 1QN1A 1F22A 2CVCA 19HCA 1J0PA 1LM2A 3OV0A 2EWUA 2MZ9A 1A2IA 1HH5A 2BPNA 2KMYA 2A3PA 2A3MA 3SJ0X 1GM4A 3SJ4X 3SJ1X 1H29A 2LDOA 1GYOA 3CAOA 2CDVA 2N91A 1OS6A 2EWKA 2YYWA 1GWSA 1IT1A 3CYRA 4HDLA 2YYXA 2CY3A 1UP9A 3CARA 1W7OA 1L3OA 1OFWA 1RWJA 4HC3A 2CYMA 2Z47A 3OUQA 2YXCA 2FFNA 1DUWA 2EWIA 4HB8A 2BQ4A 1CZJA 1EHJA 1UPDA 3H33A 1WR5A 1NEWA 1WADA 1Z1NX 1I77A 1GMBA 1J0OA 4HB6A 4HBFA 3OUEA 1AQEA 2LZZA 1QN0A 2E84A 1OFYA 3SELX 2KSUA 3BXUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HAJ A;  1MDV A;  2CTH A;  3H4N A;  3H34 A;  1KWJ A;  1QN1 A;  1F22 A;  2CVC A;  19HC A;  1J0P A;  1LM2 A;  3OV0 A;  2EWU A;  2MZ9 A;  1A2I A;  1HH5 A;  2BPN A;  2KMY A;  2A3P A;  2A3M A;  3SJ0 X;  1GM4 A;  3SJ4 X;  3SJ1 X;  1H29 A;  2LDO A;  1GYO A;  3CAO A;  2CDV A;  2N91 A;  1OS6 A;  2EWK A;  2YYW A;  1GWS A;  1IT1 A;  3CYR A;  4HDL A;  2YYX A;  2CY3 A;  1UP9 A;  3CAR A;  1W7O A;  1L3O A;  1OFW A;  1RWJ A;  4HC3 A;  2CYM A;  2Z47 A;  3OUQ A;  2YXC A;  2FFN A;  1DUW A;  2EWI A;  4HB8 A;  2BQ4 A;  1CZJ A;  1EHJ A;  1UPD A;  3H33 A;  1WR5 A;  1NEW A;  1WAD A;  1Z1N X;  1I77 A;  1GMB A;  1J0O A;  4HB6 A;  4HBF A;  3OUE A;  1AQE A;  2LZZ A;  1QN0 A;  2E84 A;  1OFY A;  3SEL X;  2KSU A;  3BXU A; 
#chains in the Genus database with same CATH topology
 4HAJ A;  1MDV A;  2CTH A;  3H4N A;  3H34 A;  1KWJ A;  1QN1 A;  1F22 A;  2CVC A;  19HC A;  1J0P A;  1LM2 A;  3OV0 A;  2EWU A;  2MZ9 A;  1A2I A;  1HH5 A;  2BPN A;  2KMY A;  2A3P A;  2A3M A;  3SJ0 X;  1GM4 A;  3SJ4 X;  3SJ1 X;  1H29 A;  2LDO A;  1GYO A;  3CAO A;  2CDV A;  2N91 A;  1OS6 A;  2EWK A;  2YYW A;  1GWS A;  1IT1 A;  3CYR A;  4HDL A;  2YYX A;  2CY3 A;  1UP9 A;  3CAR A;  1W7O A;  1L3O A;  1OFW A;  1RWJ A;  4HC3 A;  2CYM A;  2Z47 A;  3OUQ A;  2YXC A;  2FFN A;  1DUW A;  2EWI A;  4HB8 A;  2BQ4 A;  1CZJ A;  1EHJ A;  1UPD A;  3H33 A;  1WR5 A;  1NEW A;  1WAD A;  1Z1N X;  1I77 A;  1GMB A;  1J0O A;  4HB6 A;  4HBF A;  3OUE A;  1AQE A;  2LZZ A;  1QN0 A;  2E84 A;  1OFY A;  3SEL X;  2KSU A;  3BXU A; 
#chains in the Genus database with same CATH homology
 4HAJ A;  1MDV A;  2CTH A;  3H4N A;  3H34 A;  1KWJ A;  1QN1 A;  1F22 A;  2CVC A;  19HC A;  1J0P A;  1LM2 A;  3OV0 A;  2EWU A;  2MZ9 A;  1A2I A;  1HH5 A;  2BPN A;  2KMY A;  2A3P A;  2A3M A;  3SJ0 X;  1GM4 A;  3SJ4 X;  3SJ1 X;  1H29 A;  2LDO A;  1GYO A;  3CAO A;  2CDV A;  2N91 A;  1OS6 A;  2EWK A;  2YYW A;  1GWS A;  1IT1 A;  3CYR A;  4HDL A;  2YYX A;  2CY3 A;  1UP9 A;  3CAR A;  1W7O A;  1L3O A;  1OFW A;  1RWJ A;  4HC3 A;  2CYM A;  2Z47 A;  3OUQ A;  2YXC A;  2FFN A;  1DUW A;  2EWI A;  4HB8 A;  2BQ4 A;  1CZJ A;  1EHJ A;  1UPD A;  3H33 A;  1WR5 A;  1NEW A;  1WAD A;  1Z1N X;  1I77 A;  1GMB A;  1J0O A;  4HB6 A;  4HBF A;  3OUE A;  1AQE A;  2LZZ A;  1QN0 A;  2E84 A;  1OFY A;  3SEL X;  2KSU A;  3BXU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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