3LMUA

Crystal strucutre of dtd from plasmodium falciparum
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
159
structure length
155
Chain Sequence
MRVVIQRVKGAILSVRKENIGEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS6 (141-156)TIV1 (17-20)S3 (36-42)TI2 (103-106)AH1 (49-60)TIV2 (66-71)AH2 (109-126)TIV3 (70-73)3H1 (76-79)TI3 (128-131)3H2 (90-92)TIV4 (95-98)S5 (132-134)TI1 (44-47)S1 (2-16)TII1 (136-139)S2 (27-33)S4 (82-87)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Plasmodium falciparum
publication title Structure of D-tyrosyl-tRNATyr deacylase using home-source Cu Kalpha and moderate-quality iodide-SAD data: structural polymorphism and HEPES-bound enzyme states
pubmed doi rcsb
molecule keywords D-tyrosyl-tRNA(Tyr) deacylase
total genus 37
structure length 155
sequence length 159
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.1.1.96: D-aminoacyl-tRNA deacylase.
pdb deposition date 2010-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02580 Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase; Chain: A; D-tyrosyl-trna(Tyr) Deacylase; Chain: A; 3lmuA00
3KO4A 3KO3A 2HL1A 4RR9A 1J7GA 4S0IA 2HL0A 3KOCA 3KOBA 4RR6A 4S03A 1Y2QA 3LMTA 2HL2A 4S0KA 3LMVA 4RRLA 4RRAA 3PD2A 1TC5A 4S0LA 4RRJA 2HKZA 3KO9A 3LMUA 4RRRA 3PD4A 2OKVA 4RRBA 4RRKA 3PD3A 3KNPA 3KODA 4RR8A 3KNFA 3KO5A 4NBJA 4RRCA 5J61A 4S0JA 4RRMA 4NBIA 3PD5A 4RRDA 4S02A 3KO7A 4RRFA 1JKEA 2DBOA 4RRHA 4RR7A 4RRIA 4RRGA 4RRQA
chains in the Genus database with same CATH superfamily
3KO4A 2HL0A 3A3DA 4S03A 3A3IA 3LMVA 3A3EA 2EXAA 1TC5A 3ZCZA 1W79A 2OKVA 4B4XA 3A3FA 1W8QA 4RRFA 1JKEA 2Y59A 2EXBA 4RRQA 3KO3A 2EX2A 2XK1A 2HL2A 5CEBA 4RRJA 2HKZA 4RRBA 5J61A 2VGJA 4NBIA 4S02A 3KO7A 2DBOA 2EX8A 3ZVTA 4B4ZA 2HL1A 5CEDA 3KOBA 3ZVWA 4S0KA 2VGKA 1W5DA 4RRAA 3PD2A 5CECA 2J9PA 4RRRA 3PD4A 4RRKA 3KNPA 3KODA 4RR8A 3KNFA 4NBJA 2Y55A 4RRMA 4RRDA 4BENA 2XLNA 1J7GA 4RR9A 4S0IA 3KOCA 4RR6A 1Y2QA 3LMTA 2Y4AA 2XDMA 4RRLA 1W8YA 3V39A 4S0LA 5CERA 3LMUA 3KO9A 2WKEA 2EX6A 3PD3A 4RRCA 3KO5A 4S0JA 3PD5A 4RR7A 4RRIA 4RRHA 4RRGA 2EX9A
chains in the Genus database with same CATH topology
3KO4A 2HL0A 3A3DA 4S03A 3A3IA 3LMVA 3A3EA 2EXAA 1TC5A 3ZCZA 1W79A 2OKVA 4B4XA 3A3FA 1W8QA 4RRFA 1JKEA 2Y59A 2EXBA 4RRQA 3KO3A 2EX2A 2XK1A 2HL2A 5CEBA 4RRJA 2HKZA 4RRBA 5J61A 2VGJA 4NBIA 4S02A 3KO7A 2DBOA 2EX8A 3ZVTA 4B4ZA 2HL1A 5CEDA 3KOBA 3ZVWA 4S0KA 2VGKA 1W5DA 4RRAA 3PD2A 5CECA 2J9PA 4RRRA 3PD4A 4RRKA 3KNPA 3KODA 4RR8A 3KNFA 4NBJA 2Y55A 4RRMA 4RRDA 4BENA 2XLNA 1J7GA 4RR9A 4S0IA 3KOCA 4RR6A 1Y2QA 3LMTA 2Y4AA 2XDMA 4RRLA 1W8YA 3V39A 4S0LA 5CERA 3LMUA 3KO9A 2WKEA 2EX6A 3PD3A 4RRCA 3KO5A 4S0JA 3PD5A 4RR7A 4RRIA 4RRHA 4RRGA 2EX9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KO4 A;  3KO3 A;  2HL1 A;  4RR9 A;  1J7G A;  4S0I A;  2HL0 A;  3KOC A;  3KOB A;  4RR6 A;  4S03 A;  1Y2Q A;  3LMT A;  2HL2 A;  4S0K A;  3LMV A;  4RRL A;  4RRA A;  3PD2 A;  1TC5 A;  4S0L A;  4RRJ A;  2HKZ A;  3KO9 A;  3LMU A;  4RRR A;  3PD4 A;  2OKV A;  4RRB A;  4RRK A;  3PD3 A;  3KNP A;  3KOD A;  4RR8 A;  3KNF A;  3KO5 A;  4NBJ A;  4RRC A;  5J61 A;  4S0J A;  4RRM A;  4NBI A;  3PD5 A;  4RRD A;  4S02 A;  3KO7 A;  4RRF A;  1JKE A;  2DBO A;  4RRH A;  4RR7 A;  4RRI A;  4RRG A;  4RRQ A; 
#chains in the Genus database with same CATH topology
 3KO4 A;  2HL0 A;  3A3D A;  4S03 A;  3A3I A;  3LMV A;  3A3E A;  2EXA A;  1TC5 A;  3ZCZ A;  1W79 A;  2OKV A;  4B4X A;  3A3F A;  1W8Q A;  4RRF A;  1JKE A;  2Y59 A;  2EXB A;  4RRQ A;  3KO3 A;  2EX2 A;  2XK1 A;  2HL2 A;  5CEB A;  4RRJ A;  2HKZ A;  4RRB A;  5J61 A;  2VGJ A;  4NBI A;  4S02 A;  3KO7 A;  2DBO A;  2EX8 A;  3ZVT A;  4B4Z A;  2HL1 A;  5CED A;  3KOB A;  3ZVW A;  4S0K A;  2VGK A;  1W5D A;  4RRA A;  3PD2 A;  5CEC A;  2J9P A;  4RRR A;  3PD4 A;  4RRK A;  3KNP A;  3KOD A;  4RR8 A;  3KNF A;  4NBJ A;  2Y55 A;  4RRM A;  4RRD A;  4BEN A;  2XLN A;  1J7G A;  4RR9 A;  4S0I A;  3KOC A;  4RR6 A;  1Y2Q A;  3LMT A;  2Y4A A;  2XDM A;  4RRL A;  1W8Y A;  3V39 A;  4S0L A;  5CER A;  3LMU A;  3KO9 A;  2WKE A;  2EX6 A;  3PD3 A;  4RRC A;  3KO5 A;  4S0J A;  3PD5 A;  4RR7 A;  4RRI A;  4RRH A;  4RRG A;  2EX9 A; 
#chains in the Genus database with same CATH homology
 3KO4 A;  2HL0 A;  3A3D A;  4S03 A;  3A3I A;  3LMV A;  3A3E A;  2EXA A;  1TC5 A;  3ZCZ A;  1W79 A;  2OKV A;  4B4X A;  3A3F A;  1W8Q A;  4RRF A;  1JKE A;  2Y59 A;  2EXB A;  4RRQ A;  3KO3 A;  2EX2 A;  2XK1 A;  2HL2 A;  5CEB A;  4RRJ A;  2HKZ A;  4RRB A;  5J61 A;  2VGJ A;  4NBI A;  4S02 A;  3KO7 A;  2DBO A;  2EX8 A;  3ZVT A;  4B4Z A;  2HL1 A;  5CED A;  3KOB A;  3ZVW A;  4S0K A;  2VGK A;  1W5D A;  4RRA A;  3PD2 A;  5CEC A;  2J9P A;  4RRR A;  3PD4 A;  4RRK A;  3KNP A;  3KOD A;  4RR8 A;  3KNF A;  4NBJ A;  2Y55 A;  4RRM A;  4RRD A;  4BEN A;  2XLN A;  1J7G A;  4RR9 A;  4S0I A;  3KOC A;  4RR6 A;  1Y2Q A;  3LMT A;  2Y4A A;  2XDM A;  4RRL A;  1W8Y A;  3V39 A;  4S0L A;  5CER A;  3LMU A;  3KO9 A;  2WKE A;  2EX6 A;  3PD3 A;  4RRC A;  3KO5 A;  4S0J A;  3PD5 A;  4RR7 A;  4RRI A;  4RRH A;  4RRG A;  2EX9 A; 
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