4RR6A

N-terminal editing domain of threonyl-trna synthetase from aeropyrum pernix with l-ser3aa (snapshot 1)
Total Genus 40

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
136
structure length
136
Chain Sequence
MRLLYLHADRFEYKTVKPALKNPPDPPGEASFGEALVVFTTVEDGDGPQTVMYAASDIASHSSRLKVTTVILYPYAHLSSRLAKPMAAHKRLIELEGALRTKFPGHVHRAPFGWYKSFSIACKGHPLAELSRSFTE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (48-65)S1 (2-18)TIV2 (32-35)S5 (106-109)S3 (35-41)TII1 (43-46)S7 (129-133)EMPTYS4 (69-74)TIV3 (79-82)S6 (114-122)TI1 (125-128)S2 (29-32)AH2 (85-101)Updating...
connected with : NaN
publication title Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.
pubmed doi rcsb
molecule tags Ligase
source organism Aeropyrum pernix k1
molecule keywords Probable threonine--tRNA ligase 2
total genus 40
structure length 136
sequence length 136
ec nomenclature ec 6.1.1.3: Threonine--tRNA ligase.
pdb deposition date 2014-11-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08915 tRNA-Thr_ED Archaea-specific editing domain of threonyl-tRNA synthetase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase; Chain: A; D-tyrosyl-trna(Tyr) Deacylase; Chain: A; 4rr6A01
3KOCA 3KOBA 4NBJA 4RRBA 2HL0A 3PD3A 2HKZA 1JKEA 1Y2QA 2DBOA 4RRGA 4S02A 3KNFA 4S03A 1TC5A 4RR7A 1J7GA 3PD2A 3KO4A 5J61A 4RR8A 3LMVA 4RRHA 4RRDA 4S0IA 4RRJA 4RRAA 4S0JA 3KNPA 3LMTA 4S0KA 4RRRA 2HL1A 3KO9A 4RRMA 3PD5A 4S0LA 4NBIA 3KO5A 4RRCA 3KODA 3PD4A 4RRFA 4RRLA 3LMUA 2OKVA 4RR6A 3KO3A 4RR9A 4RRKA 3KO7A 4RRIA 2HL2A 4RRQA
chains in the Genus database with same CATH superfamily
2Y59A 3KOBA 2XDMA 3ZVTA 4S03A 1TC5A 4RR7A 3ZCZA 3LMVA 3A3FA 5CECA 4S0KA 2HL1A 2EX2A 2XLNA 4RRLA 2XK1A 2EX9A 4RRIA 4RRQA 2EX6A 4NBJA 3PD3A 3ZVWA 4BENA 1Y2QA 4RRGA 4S02A 2Y4AA 1W5DA 3KNFA 5CEBA 3PD2A 5CERA 3KO4A 4RR8A 4RRAA 4S0JA 3KNPA 3KO9A 4RRMA 2EX8A 3KO5A 4RRCA 3KODA 3PD4A 2EXAA 4RR9A 2HL2A 3KOCA 2HL0A 2DBOA 2WKEA 5J61A 3A3IA 4RRHA 4S0IA 4RRJA 4B4XA 4B4ZA 4RRRA 4S0LA 4NBIA 5CEDA 2Y55A 4RRFA 3LMUA 3KO7A 4RRBA 3A3EA 2HKZA 1JKEA 1W8YA 1W8QA 1W79A 1J7GA 2VGKA 4RRDA 3LMTA 3PD5A 3A3DA 3V39A 2OKVA 2VGJA 4RR6A 2EXBA 3KO3A 4RRKA 2J9PA
chains in the Genus database with same CATH topology
2Y59A 3KOBA 2XDMA 3ZVTA 4S03A 1TC5A 4RR7A 3ZCZA 3LMVA 3A3FA 5CECA 4S0KA 2HL1A 2EX2A 2XLNA 4RRLA 2XK1A 2EX9A 4RRIA 4RRQA 2EX6A 4NBJA 3PD3A 3ZVWA 4BENA 1Y2QA 4RRGA 4S02A 2Y4AA 1W5DA 3KNFA 5CEBA 3PD2A 5CERA 3KO4A 4RR8A 4RRAA 4S0JA 3KNPA 3KO9A 4RRMA 2EX8A 3KO5A 4RRCA 3KODA 3PD4A 2EXAA 4RR9A 2HL2A 3KOCA 2HL0A 2DBOA 2WKEA 5J61A 3A3IA 4RRHA 4S0IA 4RRJA 4B4XA 4B4ZA 4RRRA 4S0LA 4NBIA 5CEDA 2Y55A 4RRFA 3LMUA 3KO7A 4RRBA 3A3EA 2HKZA 1JKEA 1W8YA 1W8QA 1W79A 1J7GA 2VGKA 4RRDA 3LMTA 3PD5A 3A3DA 3V39A 2OKVA 2VGJA 4RR6A 2EXBA 3KO3A 4RRKA 2J9PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KOC A;  3KOB A;  4NBJ A;  4RRB A;  2HL0 A;  3PD3 A;  2HKZ A;  1JKE A;  1Y2Q A;  2DBO A;  4RRG A;  4S02 A;  3KNF A;  4S03 A;  1TC5 A;  4RR7 A;  1J7G A;  3PD2 A;  3KO4 A;  5J61 A;  4RR8 A;  3LMV A;  4RRH A;  4RRD A;  4S0I A;  4RRJ A;  4RRA A;  4S0J A;  3KNP A;  3LMT A;  4S0K A;  4RRR A;  2HL1 A;  3KO9 A;  4RRM A;  3PD5 A;  4S0L A;  4NBI A;  3KO5 A;  4RRC A;  3KOD A;  3PD4 A;  4RRF A;  4RRL A;  3LMU A;  2OKV A;  4RR6 A;  3KO3 A;  4RR9 A;  4RRK A;  3KO7 A;  4RRI A;  2HL2 A;  4RRQ A; 
#chains in the Genus database with same CATH topology
 2Y59 A;  3KOB A;  2XDM A;  3ZVT A;  4S03 A;  1TC5 A;  4RR7 A;  3ZCZ A;  3LMV A;  3A3F A;  5CEC A;  4S0K A;  2HL1 A;  2EX2 A;  2XLN A;  4RRL A;  2XK1 A;  2EX9 A;  4RRI A;  4RRQ A;  2EX6 A;  4NBJ A;  3PD3 A;  3ZVW A;  4BEN A;  1Y2Q A;  4RRG A;  4S02 A;  2Y4A A;  1W5D A;  3KNF A;  5CEB A;  3PD2 A;  5CER A;  3KO4 A;  4RR8 A;  4RRA A;  4S0J A;  3KNP A;  3KO9 A;  4RRM A;  2EX8 A;  3KO5 A;  4RRC A;  3KOD A;  3PD4 A;  2EXA A;  4RR9 A;  2HL2 A;  3KOC A;  2HL0 A;  2DBO A;  2WKE A;  5J61 A;  3A3I A;  4RRH A;  4S0I A;  4RRJ A;  4B4X A;  4B4Z A;  4RRR A;  4S0L A;  4NBI A;  5CED A;  2Y55 A;  4RRF A;  3LMU A;  3KO7 A;  4RRB A;  3A3E A;  2HKZ A;  1JKE A;  1W8Y A;  1W8Q A;  1W79 A;  1J7G A;  2VGK A;  4RRD A;  3LMT A;  3PD5 A;  3A3D A;  3V39 A;  2OKV A;  2VGJ A;  4RR6 A;  2EXB A;  3KO3 A;  4RRK A;  2J9P A; 
#chains in the Genus database with same CATH homology
 2Y59 A;  3KOB A;  2XDM A;  3ZVT A;  4S03 A;  1TC5 A;  4RR7 A;  3ZCZ A;  3LMV A;  3A3F A;  5CEC A;  4S0K A;  2HL1 A;  2EX2 A;  2XLN A;  4RRL A;  2XK1 A;  2EX9 A;  4RRI A;  4RRQ A;  2EX6 A;  4NBJ A;  3PD3 A;  3ZVW A;  4BEN A;  1Y2Q A;  4RRG A;  4S02 A;  2Y4A A;  1W5D A;  3KNF A;  5CEB A;  3PD2 A;  5CER A;  3KO4 A;  4RR8 A;  4RRA A;  4S0J A;  3KNP A;  3KO9 A;  4RRM A;  2EX8 A;  3KO5 A;  4RRC A;  3KOD A;  3PD4 A;  2EXA A;  4RR9 A;  2HL2 A;  3KOC A;  2HL0 A;  2DBO A;  2WKE A;  5J61 A;  3A3I A;  4RRH A;  4S0I A;  4RRJ A;  4B4X A;  4B4Z A;  4RRR A;  4S0L A;  4NBI A;  5CED A;  2Y55 A;  4RRF A;  3LMU A;  3KO7 A;  4RRB A;  3A3E A;  2HKZ A;  1JKE A;  1W8Y A;  1W8Q A;  1W79 A;  1J7G A;  2VGK A;  4RRD A;  3LMT A;  3PD5 A;  3A3D A;  3V39 A;  2OKV A;  2VGJ A;  4RR6 A;  2EXB A;  3KO3 A;  4RRK A;  2J9P A; 
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