5J61 | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	160
structure length	151
Chain Sequence	MRVVIQRVKGAILSVRKLEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHDI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 151 atoms

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151 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Plasmodium falciparum (isolate 3d7)
publication title	Elongation Factor Tu Prevents Misediting of Gly-tRNA(Gly) Caused by the Design Behind the Chiral Proofreading Site of D-Aminoacyl-tRNA Deacylase pubmed doi rcsb
molecule keywords	D-tyrosyl-tRNA(Tyr) deacylase
total genus	34
structure length	151
sequence length	160
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature	ec 3.1.1.96: D-aminoacyl-tRNA deacylase.
pdb deposition date	2016-04-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02580	Tyr_Deacylase	D-Tyr-tRNA(Tyr) deacylase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.50.80.10	Alpha Beta	3-Layer(bba) Sandwich	D-tyrosyl-trna(Tyr) Deacylase; Chain: A;	D-tyrosyl-trna(Tyr) Deacylase; Chain: A;	5j61A00

4RRCA 3KO3A 4RRFA 4NBIA 3KOBA 3LMVA 4RRQA 3KOCA 4RRHA 4RR8A 4RRMA 4RRAA 1J7GA 2OKVA 4S0LA 2HL1A 2DBOA 3KO5A 1TC5A 2HL0A 4RRRA 1JKEA 3KNFA 4RRKA 4RRDA 4S0IA 3KO7A 3PD2A 4NBJA 3PD4A 3KODA 4RRJA 4RR9A 4RRLA 4S0JA 2HKZA 3KO4A 4RR6A 3LMUA 3PD3A 4S03A 5J61A 4RRIA 2HL2A 3KO9A 4RRGA 4RRBA 3LMTA 3KNPA 3PD5A 4RR7A 4S02A 4S0KA 1Y2QA
chains in the Genus database with same CATH superfamily

4RRCA 1W79A 3KOCA 4RR8A 3ZVTA 2OKVA 2HL1A 2DBOA 4B4ZA 3A3DA 1TC5A 3KO5A 4NBJA 2Y4AA 4RRJA 2WKEA 4RR6A 2HL2A 3KO9A 4RRBA 3LMTA 3ZVWA 4S02A 2EXBA 2J9PA 3KO3A 1W5DA 1W8YA 4RRFA 3LMVA 4RRHA 4RRAA 1J7GA 4S0LA 4RRRA 1JKEA 5CERA 4B4XA 2EX8A 5CEBA 2VGKA 3KODA 4S0JA 4RR9A 2XDMA 3A3EA 3A3FA 1Y2QA 4RRMA 2XK1A 3A3IA 3V39A 2VGJA 4RRKA 3ZCZA 3PD2A 3PD4A 4RRLA 5CECA 3KO4A 4RRGA 3KNPA 3PD5A 2EXAA 4RR7A 4S0KA 5CEDA 4NBIA 3KOBA 4RRQA 2EX9A 2XLNA 4BENA 2EX6A 2HL0A 3KNFA 4RRDA 4S0IA 3KO7A 2Y59A 2EX2A 2HKZA 3LMUA 3PD3A 4S03A 5J61A 4RRIA 2Y55A 1W8QA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4RRC A;  3KO3 A;  4RRF A;  4NBI A;  3KOB A;  3LMV A;  4RRQ A;  3KOC A;  4RRH A;  4RR8 A;  4RRM A;  4RRA A;  1J7G A;  2OKV A;  4S0L A;  2HL1 A;  2DBO A;  3KO5 A;  1TC5 A;  2HL0 A;  4RRR A;  1JKE A;  3KNF A;  4RRK A;  4RRD A;  4S0I A;  3KO7 A;  3PD2 A;  4NBJ A;  3PD4 A;  3KOD A;  4RRJ A;  4RR9 A;  4RRL A;  4S0J A;  2HKZ A;  3KO4 A;  4RR6 A;  3LMU A;  3PD3 A;  4S03 A;  5J61 A;  4RRI A;  2HL2 A;  3KO9 A;  4RRG A;  4RRB A;  3LMT A;  3KNP A;  3PD5 A;  4RR7 A;  4S02 A;  4S0K A;  1Y2Q A; 
#chains in the Genus database with same CATH topology
 4RRC A;  1W79 A;  3KOC A;  4RR8 A;  3ZVT A;  2OKV A;  2HL1 A;  2DBO A;  4B4Z A;  3A3D A;  1TC5 A;  3KO5 A;  4NBJ A;  2Y4A A;  4RRJ A;  2WKE A;  4RR6 A;  2HL2 A;  3KO9 A;  4RRB A;  3LMT A;  3ZVW A;  4S02 A;  2EXB A;  2J9P A;  3KO3 A;  1W5D A;  1W8Y A;  4RRF A;  3LMV A;  4RRH A;  4RRA A;  1J7G A;  4S0L A;  4RRR A;  1JKE A;  5CER A;  4B4X A;  2EX8 A;  5CEB A;  2VGK A;  3KOD A;  4S0J A;  4RR9 A;  2XDM A;  3A3E A;  3A3F A;  1Y2Q A;  4RRM A;  2XK1 A;  3A3I A;  3V39 A;  2VGJ A;  4RRK A;  3ZCZ A;  3PD2 A;  3PD4 A;  4RRL A;  5CEC A;  3KO4 A;  4RRG A;  3KNP A;  3PD5 A;  2EXA A;  4RR7 A;  4S0K A;  5CED A;  4NBI A;  3KOB A;  4RRQ A;  2EX9 A;  2XLN A;  4BEN A;  2EX6 A;  2HL0 A;  3KNF A;  4RRD A;  4S0I A;  3KO7 A;  2Y59 A;  2EX2 A;  2HKZ A;  3LMU A;  3PD3 A;  4S03 A;  5J61 A;  4RRI A;  2Y55 A;  1W8Q A; 
#chains in the Genus database with same CATH homology
 4RRC A;  1W79 A;  3KOC A;  4RR8 A;  3ZVT A;  2OKV A;  2HL1 A;  2DBO A;  4B4Z A;  3A3D A;  1TC5 A;  3KO5 A;  4NBJ A;  2Y4A A;  4RRJ A;  2WKE A;  4RR6 A;  2HL2 A;  3KO9 A;  4RRB A;  3LMT A;  3ZVW A;  4S02 A;  2EXB A;  2J9P A;  3KO3 A;  1W5D A;  1W8Y A;  4RRF A;  3LMV A;  4RRH A;  4RRA A;  1J7G A;  4S0L A;  4RRR A;  1JKE A;  5CER A;  4B4X A;  2EX8 A;  5CEB A;  2VGK A;  3KOD A;  4S0J A;  4RR9 A;  2XDM A;  3A3E A;  3A3F A;  1Y2Q A;  4RRM A;  2XK1 A;  3A3I A;  3V39 A;  2VGJ A;  4RRK A;  3ZCZ A;  3PD2 A;  3PD4 A;  4RRL A;  5CEC A;  3KO4 A;  4RRG A;  3KNP A;  3PD5 A;  2EXA A;  4RR7 A;  4S0K A;  5CED A;  4NBI A;  3KOB A;  4RRQ A;  2EX9 A;  2XLN A;  4BEN A;  2EX6 A;  2HL0 A;  3KNF A;  4RRD A;  4S0I A;  3KO7 A;  2Y59 A;  2EX2 A;  2HKZ A;  3LMU A;  3PD3 A;  4S03 A;  5J61 A;  4RRI A;  2Y55 A;  1W8Q A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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5J61A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations