The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
164
|
structure length |
164
|
Chain Sequence |
MLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPGLPDPYTIPYHIAVSIGAKTLTLSLNNRVMKTYPIAVGKILTQTPTGEFYIINRQRNPGGPFGAYWLSLSAAHYGIHGTNNPASIGKAVSKGCIRMHNKDVIELASIVPNGTRVTINR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
B. subtilis ykuD protein at 2.0 A resolution: insights into the structure and function of a novel, ubiquitous family of bacterial enzymes.
pubmed doi rcsb |
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Bacillus subtilis subsp. subtilis str. 168
|
| molecule keywords |
hypothetical protein BSU14040
|
| total genus |
38
|
| structure length |
164
|
| sequence length |
164
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2004-12-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01476 | LysM | LysM domain |
| A | PF03734 | YkuD | L,D-transpeptidase catalytic domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Barrel | L,D-transpeptidase catalytic domain-like | L,D-transpeptidase catalytic domain-like | ||
| Alpha Beta | Roll | Membrane-bound Lytic Murein Transglycosylase D; Chain A | LysM domain |
#chains in the Genus database with same CATH superfamily 5DZJ A; 2LTF A; 5LB1 A; 4HUC A; 4QR7 A; 2HKL A; 4A52 A; 5DC2 A; 3VAE A; 1ZAT A; 3ZQD A; 4ZFQ A; 3ZG4 A; 3VYP A; 4B9H A; 3U1P A; 4LPQ A; 2MTZ A; 5C8O A; 5DCC A; 4PXV A; 5C8Q B; 4JMX A; 4B8V A; 4Z7A A; 5E1G A; 4XVO A; 5K2L A; 5C8P A; 2L9Y A; 4A1I A; 3U1Q A; 3TX4 A; 3VYN A; 4GSU A; 3ZGP A; 5LBG A; 3VYO A; 4JMN A; 2DJP A; 4GSR A; 5D7H A; 4K73 A; 4A1J A; 1Y7M A; 3TUR A; 4GSQ A; 4QRB A; 5E51 A; 5DUJ A; 4LZH A; 4QRA A; 5DZP A; 4A1K A; 5E5L A; 5BUM A; 4QTF A; 2MKX A; 5K69 A; 5DU7 A; 5E1I A; 1E0G A; 5DVP A; #chains in the Genus database with same CATH topology 5DZJ A; 2LTF A; 5LB1 A; 4HUC A; 4QR7 A; 2HKL A; 4A52 A; 5DC2 A; 3VAE A; 1ZAT A; 3ZQD A; 4ZFQ A; 3ZG4 A; 3VYP A; 4B9H A; 3U1P A; 4LPQ A; 2MTZ A; 5C8O A; 5DCC A; 4PXV A; 5C8Q B; 4JMX A; 4B8V A; 4Z7A A; 5E1G A; 4XVO A; 5K2L A; 5C8P A; 2L9Y A; 4A1I A; 3U1Q A; 3TX4 A; 3VYN A; 4GSU A; 3ZGP A; 5LBG A; 3VYO A; 4JMN A; 2DJP A; 4GSR A; 5D7H A; 4K73 A; 4A1J A; 1Y7M A; 3TUR A; 4GSQ A; 4QRB A; 5E51 A; 5DUJ A; 4LZH A; 4QRA A; 5DZP A; 4A1K A; 5E5L A; 5BUM A; 4QTF A; 2MKX A; 5K69 A; 5DU7 A; 5E1I A; 1E0G A; 5DVP A; #chains in the Genus database with same CATH homology 5DZJ A; 2LTF A; 5LB1 A; 4HUC A; 4QR7 A; 2HKL A; 4A52 A; 5DC2 A; 3VAE A; 1ZAT A; 3ZQD A; 4ZFQ A; 3ZG4 A; 3VYP A; 4B9H A; 3U1P A; 4LPQ A; 2MTZ A; 5C8O A; 5DCC A; 4PXV A; 5C8Q B; 4JMX A; 4B8V A; 4Z7A A; 5E1G A; 4XVO A; 5K2L A; 5C8P A; 2L9Y A; 4A1I A; 3U1Q A; 3TX4 A; 3VYN A; 4GSU A; 3ZGP A; 5LBG A; 3VYO A; 4JMN A; 2DJP A; 4GSR A; 5D7H A; 4K73 A; 4A1J A; 1Y7M A; 3TUR A; 4GSQ A; 4QRB A; 5E51 A; 5DUJ A; 4LZH A; 4QRA A; 5DZP A; 4A1K A; 5E5L A; 5BUM A; 4QTF A; 2MKX A; 5K69 A; 5DU7 A; 5E1I A; 1E0G A; 5DVP A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
