1ZAT | Genus

Total Genus 62

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	62
sequence length	250
structure length	248
Chain Sequence	KEQLASMNAIANVKATYSINGETFQIPSSDIMSWLTYNDGKVDLDTEQVRQYVTDLGTKYNTSTNDTKFKSTKRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTRSPIVQGGTTADHPLIEDTYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTNGTPYESPVNYWMPIDWTGVGIHDSDWQPEYGGDLWKTRGSHGCINTPPSVMKELFGMVEKGTPVLVF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Enterococcus faecium
publication title	Crystal Structure of a Novel beta-Lactam-insensitive Peptidoglycan Transpeptidase. pubmed doi rcsb
molecule keywords	L,D-transpeptidase
total genus	62
structure length	248
sequence length	250
ec nomenclature
pdb deposition date	2005-04-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03734	YkuD	L,D-transpeptidase catalytic domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.269.20	Mainly Alpha	Orthogonal Bundle	Adenovirus Single-stranded Dna-binding Protein, domain 1	Adenovirus Single-stranded Dna-binding Protein, domain 1	1zatA01
2.40.440.10	Mainly Beta	Beta Barrel	L,D-transpeptidase catalytic domain-like	L,D-transpeptidase catalytic domain-like	1zatA02

2HKLA 3TX4A 5LB1A 4ZFQA 5K69A 4LZHA 5E51A 4A1IA 4A1KA 4QTFA 5DUJA 4HUCA 3ZQDA 4GSRA 4GSQA 3U1PA 4A52A 4JMNA 5DCCA 4QRAA 4XVOA 4Z7AA 3U1QA 5DVPA 4QR7A 4LPQA 1Y7MA 5E1GA 3ZG4A 3VAEA 5DC2A 3VYOA 4QRBA 5E5LA 5E1IA 4K73A 4GSUA 5LBGA 4A1JA 4JMXA 5DU7A 5DZPA 2MTZA 3ZGPA 5D7HA 3TURA 3VYNA 3VYPA 1ZATA 5DZJA
chains in the Genus database with same CATH superfamily

2HKLA 3TX4A 5LB1A 4ZFQA 5K69A 4LZHA 5E51A 4A1IA 4A1KA 4QTFA 5DUJA 4HUCA 2WB0X 3ZQDA 4GSRA 4GSQA 3U1PA 4A52A 4JMNA 1ADVA 5DCCA 4QRAA 4XVOA 4Z7AA 3U1QA 5DVPA 4QR7A 4LPQA 1Y7MA 5E1GA 3ZG4A 3VAEA 5DC2A 3VYOA 4QRBA 5E5LA 5E1IA 4K73A 1ADUA 4GSUA 5LBGA 1ANVA 4A1JA 4JMXA 5DU7A 2WAZX 5DZPA 2MTZA 3ZGPA 5D7HA 3TURA 3VYNA 3VYPA 1ZATA 5DZJA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2HKL A;  3TX4 A;  5LB1 A;  4ZFQ A;  5K69 A;  4LZH A;  5E51 A;  4A1I A;  4A1K A;  4QTF A;  5DUJ A;  4HUC A;  3ZQD A;  4GSR A;  4GSQ A;  3U1P A;  4A52 A;  4JMN A;  5DCC A;  4QRA A;  4XVO A;  4Z7A A;  3U1Q A;  5DVP A;  4QR7 A;  4LPQ A;  1Y7M A;  5E1G A;  3ZG4 A;  3VAE A;  5DC2 A;  3VYO A;  4QRB A;  5E5L A;  5E1I A;  4K73 A;  4GSU A;  5LBG A;  4A1J A;  4JMX A;  5DU7 A;  5DZP A;  2MTZ A;  3ZGP A;  5D7H A;  3TUR A;  3VYN A;  3VYP A;  1ZAT A;  5DZJ A; 
#chains in the Genus database with same CATH topology
 2HKL A;  3TX4 A;  5LB1 A;  4ZFQ A;  5K69 A;  4LZH A;  5E51 A;  4A1I A;  4A1K A;  4QTF A;  5DUJ A;  4HUC A;  2WB0 X;  3ZQD A;  4GSR A;  4GSQ A;  3U1P A;  4A52 A;  4JMN A;  1ADV A;  5DCC A;  4QRA A;  4XVO A;  4Z7A A;  3U1Q A;  5DVP A;  4QR7 A;  4LPQ A;  1Y7M A;  5E1G A;  3ZG4 A;  3VAE A;  5DC2 A;  3VYO A;  4QRB A;  5E5L A;  5E1I A;  4K73 A;  1ADU A;  4GSU A;  5LBG A;  1ANV A;  4A1J A;  4JMX A;  5DU7 A;  2WAZ X;  5DZP A;  2MTZ A;  3ZGP A;  5D7H A;  3TUR A;  3VYN A;  3VYP A;  1ZAT A;  5DZJ A; 
#chains in the Genus database with same CATH homology
 2HKL A;  3TX4 A;  5LB1 A;  4ZFQ A;  5K69 A;  4LZH A;  5E51 A;  4A1I A;  4A1K A;  4QTF A;  5DUJ A;  4HUC A;  3ZQD A;  4GSR A;  4GSQ A;  3U1P A;  4A52 A;  4JMN A;  5DCC A;  4QRA A;  4XVO A;  4Z7A A;  3U1Q A;  5DVP A;  4QR7 A;  4LPQ A;  1Y7M A;  5E1G A;  3ZG4 A;  3VAE A;  5DC2 A;  3VYO A;  4QRB A;  5E5L A;  5E1I A;  4K73 A;  4GSU A;  5LBG A;  4A1J A;  4JMX A;  5DU7 A;  5DZP A;  2MTZ A;  3ZGP A;  5D7H A;  3TUR A;  3VYN A;  3VYP A;  1ZAT A;  5DZJ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1ZATA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations