2LNZ | Genus

Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	40
structure length	40
Chain Sequence	QELTVPWDDIEALLKNNFENDQAAVRQVMERLQKGWSLAK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 40 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Protein binding
source organism	Saccharomyces cerevisiae
publication title	Get5 Carboxyl-terminal Domain Is a Novel Dimerization Motif That Tethers an Extended Get4/Get5 Complex. pubmed doi rcsb
molecule keywords	Ubiquitin-like protein MDY2
total genus	12
structure length	40
sequence length	40
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-01-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF18514	Get5_C	Get5 C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.70	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	GTP Cyclohydrolase I; Chain A, domain 1	2lnzA00

2LO0A 3VEJA 2LNZA
chains in the Genus database with same CATH superfamily

3VEJA 2P11A 1EL6A 1WM9A 1A9CA 3LW5K 2WSFG 4NE6B 3BMBA 1FBXA 1AIPC 1N3RA 4NE5B 4NE3B 2WSEG 2LNZA 1N3TA 1FB1A 4E45B 2WSCG 2KR1A 2WSFK 1GTPA 1WUQA 1WURA 4Q7JA 1TFEA 4QPMA 3B0BC 1IS7A 2WSEK 4DRAE 1WPLA 2LO0A 2PN0A 4DU6A 2O01G 2WSCK 3LW5G 5DMZA 4R8QA 4JA3A 1A8RA 4E44B 1N3SA 1EFUB 4DRBJ 1IS8A
chains in the Genus database with same CATH topology

3VEJA 2P11A 1EL6A 1WM9A 1A9CA 4NE6B 3BMBA 1FBXA 1AIPC 1N3RA 4NE5B 4NE3B 2LNZA 1N3TA 1FB1A 4E45B 2KR1A 1GTPA 1WUQA 1WURA 4Q7JA 1TFEA 4QPMA 3B0BC 1IS7A 4DRAE 1WPLA 2LO0A 2PN0A 4DU6A 5DMZA 4R8QA 4JA3A 1A8RA 4E44B 1N3SA 1EFUB 4DRBJ 1IS8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2LO0 A;  3VEJ A;  2LNZ A; 
#chains in the Genus database with same CATH topology
 3VEJ A;  2P11 A;  1EL6 A;  1WM9 A;  1A9C A;  3LW5 K;  2WSF G;  4NE6 B;  3BMB A;  1FBX A;  1AIP C;  1N3R A;  4NE5 B;  4NE3 B;  2WSE G;  2LNZ A;  1N3T A;  1FB1 A;  4E45 B;  2WSC G;  2KR1 A;  2WSF K;  1GTP A;  1WUQ A;  1WUR A;  4Q7J A;  1TFE A;  4QPM A;  3B0B C;  1IS7 A;  2WSE K;  4DRA E;  1WPL A;  2LO0 A;  2PN0 A;  4DU6 A;  2O01 G;  2WSC K;  3LW5 G;  5DMZ A;  4R8Q A;  4JA3 A;  1A8R A;  4E44 B;  1N3S A;  1EFU B;  4DRB J;  1IS8 A; 
#chains in the Genus database with same CATH homology
 3VEJ A;  2P11 A;  1EL6 A;  1WM9 A;  1A9C A;  4NE6 B;  3BMB A;  1FBX A;  1AIP C;  1N3R A;  4NE5 B;  4NE3 B;  2LNZ A;  1N3T A;  1FB1 A;  4E45 B;  2KR1 A;  1GTP A;  1WUQ A;  1WUR A;  4Q7J A;  1TFE A;  4QPM A;  3B0B C;  1IS7 A;  4DRA E;  1WPL A;  2LO0 A;  2PN0 A;  4DU6 A;  5DMZ A;  4R8Q A;  4JA3 A;  1A8R A;  4E44 B;  1N3S A;  1EFU B;  4DRB J;  1IS8 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2LNZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations