2LNZ | Genus

Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	12
sequence length	40
structure length	40
Chain Sequence	QELTVPWDDIEALLKNNFENDQAAVRQVMERLQKGWSLAK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 40 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Get5 Carboxyl-terminal Domain Is a Novel Dimerization Motif That Tethers an Extended Get4/Get5 Complex. pubmed doi rcsb
molecule keywords	Ubiquitin-like protein MDY2
molecule tags	Protein binding
source organism	Saccharomyces cerevisiae
total genus	12
structure length	40
sequence length	40
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-01-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF18514	Get5_C	Get5 C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.70	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	GTP Cyclohydrolase I; Chain A, domain 1	2lnzA00

2LNZA 2LO0A 3VEJA
chains in the Genus database with same CATH superfamily

5DMZA 4DRBJ 3B0BC 1WM9A 1EL6A 2P11A 2LO0A 4R8QA 3VEJA 1TFEA 4DRAE 1N3TA 1N3RA 4E45B 4NE6B 2KR1A 2O01G 2WSEG 4NE3B 2LNZA 1AIPC 2WSEK 1A9CA 1IS7A 1GTPA 1A8RA 2WSCK 2WSFG 1FBXA 2WSCG 3LW5G 2WSFK 3LW5K 1WPLA 4QPMA 1EFUB 1FB1A 1IS8A 1WUQA 4DU6A 4JA3A 1N3SA 4NE5B 4E44B 2PN0A 4Q7JA 1WURA 3BMBA
chains in the Genus database with same CATH topology

5DMZA 4DRBJ 3B0BC 1WM9A 1EL6A 2P11A 2LO0A 4R8QA 3VEJA 1TFEA 4DRAE 1N3TA 1N3RA 4E45B 4NE6B 2KR1A 4NE3B 2LNZA 1AIPC 1A9CA 1IS7A 1GTPA 1A8RA 1FBXA 4QPMA 1WPLA 1EFUB 1FB1A 1IS8A 1WUQA 4DU6A 4JA3A 1N3SA 4NE5B 4E44B 2PN0A 4Q7JA 1WURA 3BMBA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2LNZ A;  2LO0 A;  3VEJ A; 
#chains in the Genus database with same CATH topology
 5DMZ A;  4DRB J;  3B0B C;  1WM9 A;  1EL6 A;  2P11 A;  2LO0 A;  4R8Q A;  3VEJ A;  1TFE A;  4DRA E;  1N3T A;  1N3R A;  4E45 B;  4NE6 B;  2KR1 A;  2O01 G;  2WSE G;  4NE3 B;  2LNZ A;  1AIP C;  2WSE K;  1A9C A;  1IS7 A;  1GTP A;  1A8R A;  2WSC K;  2WSF G;  1FBX A;  2WSC G;  3LW5 G;  2WSF K;  3LW5 K;  1WPL A;  4QPM A;  1EFU B;  1FB1 A;  1IS8 A;  1WUQ A;  4DU6 A;  4JA3 A;  1N3S A;  4NE5 B;  4E44 B;  2PN0 A;  4Q7J A;  1WUR A;  3BMB A; 
#chains in the Genus database with same CATH homology
 5DMZ A;  4DRB J;  3B0B C;  1WM9 A;  1EL6 A;  2P11 A;  2LO0 A;  4R8Q A;  3VEJ A;  1TFE A;  4DRA E;  1N3T A;  1N3R A;  4E45 B;  4NE6 B;  2KR1 A;  4NE3 B;  2LNZ A;  1AIP C;  1A9C A;  1IS7 A;  1GTP A;  1A8R A;  1FBX A;  4QPM A;  1WPL A;  1EFU B;  1FB1 A;  1IS8 A;  1WUQ A;  4DU6 A;  4JA3 A;  1N3S A;  4NE5 B;  4E44 B;  2PN0 A;  4Q7J A;  1WUR A;  3BMB A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2LNZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations