2PN0A

Prokaryotic transcription elongation factor grea/greb from nitrosomonas europaea
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
124
structure length
123
Chain Sequence
KPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea.
rcsb
source organism Nitrosomonas europaea
molecule tags Transcription
molecule keywords Prokaryotic transcription elongation factor GreA/GreB
total genus 29
structure length 123
sequence length 124
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 2pn0A01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 2pn0A02
1TFEA 1AIPC 4Q7JA 2EULA 2PN0A 3BMBA 3GTYX 1GRJA 2F23A 1EFUB 2P4VA 3GU0A 2ETNA
chains in the Genus database with same CATH superfamily
3KAIA 4HBEA 1E15A 4DRAE 1D7JA 5J6EA 1Q6IA 2D9FA 3KAHA 3PRDA 2MF9A 4ODRA 4QT3A 4Z2IA 1JNDA 4S3KA 3JYMA 4WIWA 5HTGA 3FAPA 1HJXA 2DSWA 4Q7NA 4MAVA 3WH0A 2B5UB 1KT1A 1NWTA 4NSBA 2A3BA 1HKJA 4NE5B 2ETNA 5HT1A 1KFWA 4N19A 1LL7A 4JYSA 1D7IA 2RQSA 3KABA 2K8IA 4O2TA 2O9OA 4Q22A 1Q1CA 1FB1A 2A3EA 2WM0A 1W26A 3ARXA 4Z2GA 3RM8A 5HKGA 2WSCG 1E6ZA 1H0IA 1Q6UA 1ZCNA 2RUCA 2DPEA 4GGQA 3WKZA 1O6IA 1ZBWA 2OLHA 4P8UA 1J4HA 3UQBA 2PV2A 4ML4A 4WKAA 1FKGA 2AOSA 1W1YA 3UQAA 1X6NA 3PA7A 1IS7A 4DWSB 4ZPWR 4DRNA 1RD6A 1NMWA 4DRBJ 2ZR5A 2IUZA 1EYMA 4W9PA 3UQIA 4DWSD 1YATA 4IT4A 1PBKA 3NI6A 3WIJA 1ITXA 1JCHB 1ROTA 2WLYA 1UR8A 2XP9A 5B8IC 2MPHA 5DMZA 1HJVA 1D2KA 3O5FA 4QIBA 4TNSA 3WL0A 1WAWA 4NE6B 1FKSA 4E45B 1FKFA 2RUDA 4FN2A 4LAXA 4Z2KA 3BMBA 3GTYX 1E6NA 2DSZA 4LAVA 4GIVA 4FAPA 3IK8A 1ZBCA 2RUQA 3ARQA 1QPFA 3H9RB 1XRVA 3B9EA 4AY1A 2PPOA 2P4VA 2KE0A 1ZK6A 4PTMA 3B9AA 4L3NA 2KR1A 2XP6A 2XP3A 4MTVA 4Z2HA 3IKGA 4DT4A 3ARZA 2DG9A 5DO2A 4TW6A 3O5OA 3KZ7A 1SR0A 5GQBA 1W9UA 3B0BC 5BXJA 4JFMA 1JNSA 4MNKA 3AQUA 3AS0A 2DG4A 3KAGA 1GRJA 2WK2A 4S3JA 2Q5AA 3OOBA 3AROA 3CHEA 4ZS6A 4W5UA 2FDMA 2PPPA 1F40A 1BKFA 4DRHA 2DSVA 2O01G 2WSFG 3B9DA 3RM9A 3PRAA 5DITA 3TC5A 1U79A 2DG3A 1UR9A 5HW6A 3O5PA 3JYJA 1GPFA 2KI3A 2MNTA 3AS3A 3CZ8A 2Y78A 1R9HA 2XP5A 1JVWA 5HUAA 1FJDA 4JFIA 4JA3A 4ODOA 3G6MA 4LAYA 2PN0A 4JFJA 4JFLA 3RGCA 2IF4A 3WD0A 4TX0A 1WPLA 4DRJA 1NH6A 1WB0A 1LG2A 3O5EA 2KR7A 4KR0B 1TCOC 1W1TA 2KGJA 1ZL1A 5DF0A 3KCEA 4DRKA 4WJXA 4BF8A 4DU6A 1FKIA 2ZQUA 2G8ZA 4MNLA 1TFEA 2ZQVA 5DEZA 3OA5A 1K9TA 1LQ0A 4DIPA 3EY6A 1H0GA 4XAKA 2PI6A 2ESCA 2RURA 4DRPA 1X6LA 2AWGA 2G41A 4P8VA 1Q6HA 1W9VA 1B6CA 1WM9A 3VAWA 3WD2A 4MGVA 4URIA 2P11A 3UI5A 3G6LA 1J4RA 4R5EA 3NRKA 1Y0OA 2EULA 2M1IA 4TW8A 3GU0A 4P8XA 4DRIA 4IT6A 2OFNA 1EIBA 1JNTA 3CGMA 1BL4A 3WD4A 1N3TA 1NWSA 4HBOA 1XHGA 2UZ5A 1J6YA 1EDQA 1LL4A 4G50A 4ODQA 3B7XA 4IPXA 2DT3A 4Q7JA 3O5LA 2KFWA 4KQZA 3BXWA 2L2SA 2LPVA 2XPAA 1FAPA 1FFRA 2F2DA 3ARVA 4LGXA 4WK9A 4MSPA 1WNOA 3O5IA 3QOKA 4DROA 3GPKA 1ROUA 2ZQSA 2ZR6A 2LGOA 2WSEG 3RFWA 4ODMA 4Z2JA 2QF8A 2PV3A 1WUQA 2XP4A 4ODNA 1C9HA 1T11A 2FAPA 4ODPA 3AS1A 4U84A 1P5QA 5D75A 1A9CA 4Z2LA 1D6OA 2PBCA 2LJ4A 1FFQA 3RMEA 2LNZA 4ODKA 3RM4A 4MNJA 1LL6A 2MLXA 3CH9A 3CHFA 3FXYA 1ZB5A 1FKRA 1D7HA 2WSEK 1OGBA 1WURA 1W9PA 2RSEA 2XP7A 4ZPVR 2MLZA 4W9OA 1HXVA 2ITKA 4UDMA 2YBTA 4R0XA 3WQWA 1YW5A 1ZU8A 3UI6A 4DRMA 1GUVA 2F23A 2N87A 1EFUB 2F4EA 1GOIA 4DZ3A 1IS8A 2WSCK 1VF8A 1F8AB 4MNMA 3O5GA 2M08A 2ZQTA 1HKIA 2XPBA 2YBUA 4P8WA 5DIVA 3LW5G 3UI4A 4R8QA 1ZBVA 2A3CA 4WKFA 3JXVA 1IX5A 1EHNA 1FKHA 1FKKA 4ODLA 1PINA 1FKBA 2VN1A 3O5QA 3PR9A 4C02B 1FKTA 3VEJA 1TFVA 3WD1A 3KADA 1FBXA 1EQ3A 2DT2A 3O5JA 1A7XA 4HARA 2DSUA 5HW8A 2B31A 3LW5K 3CHDA 4TW7A 1N3RA 3ARPA 3O5MA 1FKJA 3TDBA 3ALFA 2FKEA 3AS2A 3ALGA 3MDYB 1SYTA 3WL1A 3CHCA 4DZ2A 2DT0A 2F21A 2ZR4A 3W4RA 1CTNA 4G2PA 4NNRA 3ARWA 1HJWA 4L72B 4QT2A 4DRQA 4TYOA 4U85A 2WSFK 1FKLA 3CGNA 5DIUA 2VCDA 1OGGA 1GTPA 1QZ2A 3B8SA 4J4NA 3EIPA 4ZPTR 3ARYA 1JNEA 2JZVA 4QZVB 1FD9A 3ARSA 3WQVA 4DH0A 3TCZA 3O5KA 5HW7A 4LAWA 4J4OA 1E6RA 3UF8A 1NSGA 1LG1A 3ARRA 5I98A 2PV1A 3ARTA 1A8RA 4NE3B 1QPLA 1EL6A 4DWSA 1OWQA 1W1VA 2PPNA 3I6CA 1J4IA 1E6PA 1AIPC 4NZCA 2WLZA 1ZBKA 5HWBA 1NMVA 2LKNA 5HWCA 1LJYA 5GPRA 5HBFA 4ITZA 2MLYA 5JH8A 2A3AA 3KACA 2XP8A 3O5DA 1NWUA 1HKMA 2M2AA 3ODKA 3NTPA 1L1PA 4DWSC 4WKHA 3ARUA 1N3SA 1FKDA 1N1AA 2O92A 3O5RA 1E44A 3LUOA 4E44B 4W9QA 2KO7A 2LO0A 1M5YA 2DT1A 5GPGA 3PRBA 1E9LA 4IQ2A 3IKDA 1HKKA 1NWRA 3FY1A 4IQCA 1KT0A 3WD3A 3IHZA 4MPKA 4U86A 4JFKA 3KAFA 4QPMA 1W1PA
chains in the Genus database with same CATH topology
1FBXA 1WPLA 4DRBJ 1GTPA 3BMBA 1FB1A 4R8QA 4DRAE 1N3SA 3GTYX 3B0BC 1WUQA 1WM9A 4Q7JA 1AIPC 2P11A 1N3RA 4E44B 1GRJA 2F23A 1EFUB 2P4VA 1A9CA 2LO0A 2LNZA 2KR1A 2EULA 4DU6A 1IS8A 5DMZA 4JA3A 4NE5B 3GU0A 2ETNA 1TFEA 2PN0A 1N3TA 3VEJA 1IS7A 1A8RA 4NE3B 4NE6B 4QPMA 1WURA 4E45B 1EL6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TFE A;  1AIP C;  4Q7J A;  2EUL A;  2PN0 A;  3BMB A;  3GTY X;  1GRJ A;  2F23 A;  1EFU B;  2P4V A;  3GU0 A;  2ETN A; 
#chains in the Genus database with same CATH topology
 3KAI A;  4HBE A;  1E15 A;  4DRA E;  1D7J A;  5J6E A;  1Q6I A;  2D9F A;  3KAH A;  3PRD A;  2MF9 A;  4ODR A;  4QT3 A;  4Z2I A;  1JND A;  4S3K A;  3JYM A;  4WIW A;  5HTG A;  3FAP A;  1HJX A;  2DSW A;  4Q7N A;  4MAV A;  3WH0 A;  2B5U B;  1KT1 A;  1NWT A;  4NSB A;  2A3B A;  1HKJ A;  4NE5 B;  2ETN A;  5HT1 A;  1KFW A;  4N19 A;  1LL7 A;  4JYS A;  1D7I A;  2RQS A;  3KAB A;  2K8I A;  4O2T A;  2O9O A;  4Q22 A;  1Q1C A;  1FB1 A;  2A3E A;  2WM0 A;  1W26 A;  3ARX A;  4Z2G A;  3RM8 A;  5HKG A;  2WSC G;  1E6Z A;  1H0I A;  1Q6U A;  1ZCN A;  2RUC A;  2DPE A;  4GGQ A;  3WKZ A;  1O6I A;  1ZBW A;  2OLH A;  4P8U A;  1J4H A;  3UQB A;  2PV2 A;  4ML4 A;  4WKA A;  1FKG A;  2AOS A;  1W1Y A;  3UQA A;  1X6N A;  3PA7 A;  1IS7 A;  4DWS B;  4ZPW R;  4DRN A;  1RD6 A;  1NMW A;  4DRB J;  2ZR5 A;  2IUZ A;  1EYM A;  4W9P A;  3UQI A;  4DWS D;  1YAT A;  4IT4 A;  1PBK A;  3NI6 A;  3WIJ A;  1ITX A;  1JCH B;  1ROT A;  2WLY A;  1UR8 A;  2XP9 A;  5B8I C;  2MPH A;  5DMZ A;  1HJV A;  1D2K A;  3O5F A;  4QIB A;  4TNS A;  3WL0 A;  1WAW A;  4NE6 B;  1FKS A;  4E45 B;  1FKF A;  2RUD A;  4FN2 A;  4LAX A;  4Z2K A;  3BMB A;  3GTY X;  1E6N A;  2DSZ A;  4LAV A;  4GIV A;  4FAP A;  3IK8 A;  1ZBC A;  2RUQ A;  3ARQ A;  1QPF A;  3H9R B;  1XRV A;  3B9E A;  4AY1 A;  2PPO A;  2P4V A;  2KE0 A;  1ZK6 A;  4PTM A;  3B9A A;  4L3N A;  2KR1 A;  2XP6 A;  2XP3 A;  4MTV A;  4Z2H A;  3IKG A;  4DT4 A;  3ARZ A;  2DG9 A;  5DO2 A;  4TW6 A;  3O5O A;  3KZ7 A;  1SR0 A;  5GQB A;  1W9U A;  3B0B C;  5BXJ A;  4JFM A;  1JNS A;  4MNK A;  3AQU A;  3AS0 A;  2DG4 A;  3KAG A;  1GRJ A;  2WK2 A;  4S3J A;  2Q5A A;  3OOB A;  3ARO A;  3CHE A;  4ZS6 A;  4W5U A;  2FDM A;  2PPP A;  1F40 A;  1BKF A;  4DRH A;  2DSV A;  2O01 G;  2WSF G;  3B9D A;  3RM9 A;  3PRA A;  5DIT A;  3TC5 A;  1U79 A;  2DG3 A;  1UR9 A;  5HW6 A;  3O5P A;  3JYJ A;  1GPF A;  2KI3 A;  2MNT A;  3AS3 A;  3CZ8 A;  2Y78 A;  1R9H A;  2XP5 A;  1JVW A;  5HUA A;  1FJD A;  4JFI A;  4JA3 A;  4ODO A;  3G6M A;  4LAY A;  2PN0 A;  4JFJ A;  4JFL A;  3RGC A;  2IF4 A;  3WD0 A;  4TX0 A;  1WPL A;  4DRJ A;  1NH6 A;  1WB0 A;  1LG2 A;  3O5E A;  2KR7 A;  4KR0 B;  1TCO C;  1W1T A;  2KGJ A;  1ZL1 A;  5DF0 A;  3KCE A;  4DRK A;  4WJX A;  4BF8 A;  4DU6 A;  1FKI A;  2ZQU A;  2G8Z A;  4MNL A;  1TFE A;  2ZQV A;  5DEZ A;  3OA5 A;  1K9T A;  1LQ0 A;  4DIP A;  3EY6 A;  1H0G A;  4XAK A;  2PI6 A;  2ESC A;  2RUR A;  4DRP A;  1X6L A;  2AWG A;  2G41 A;  4P8V A;  1Q6H A;  1W9V A;  1B6C A;  1WM9 A;  3VAW A;  3WD2 A;  4MGV A;  4URI A;  2P11 A;  3UI5 A;  3G6L A;  1J4R A;  4R5E A;  3NRK A;  1Y0O A;  2EUL A;  2M1I A;  4TW8 A;  3GU0 A;  4P8X A;  4DRI A;  4IT6 A;  2OFN A;  1EIB A;  1JNT A;  3CGM A;  1BL4 A;  3WD4 A;  1N3T A;  1NWS A;  4HBO A;  1XHG A;  2UZ5 A;  1J6Y A;  1EDQ A;  1LL4 A;  4G50 A;  4ODQ A;  3B7X A;  4IPX A;  2DT3 A;  4Q7J A;  3O5L A;  2KFW A;  4KQZ A;  3BXW A;  2L2S A;  2LPV A;  2XPA A;  1FAP A;  1FFR A;  2F2D A;  3ARV A;  4LGX A;  4WK9 A;  4MSP A;  1WNO A;  3O5I A;  3QOK A;  4DRO A;  3GPK A;  1ROU A;  2ZQS A;  2ZR6 A;  2LGO A;  2WSE G;  3RFW A;  4ODM A;  4Z2J A;  2QF8 A;  2PV3 A;  1WUQ A;  2XP4 A;  4ODN A;  1C9H A;  1T11 A;  2FAP A;  4ODP A;  3AS1 A;  4U84 A;  1P5Q A;  5D75 A;  1A9C A;  4Z2L A;  1D6O A;  2PBC A;  2LJ4 A;  1FFQ A;  3RME A;  2LNZ A;  4ODK A;  3RM4 A;  4MNJ A;  1LL6 A;  2MLX A;  3CH9 A;  3CHF A;  3FXY A;  1ZB5 A;  1FKR A;  1D7H A;  2WSE K;  1OGB A;  1WUR A;  1W9P A;  2RSE A;  2XP7 A;  4ZPV R;  2MLZ A;  4W9O A;  1HXV A;  2ITK A;  4UDM A;  2YBT A;  4R0X A;  3WQW A;  1YW5 A;  1ZU8 A;  3UI6 A;  4DRM A;  1GUV A;  2F23 A;  2N87 A;  1EFU B;  2F4E A;  1GOI A;  4DZ3 A;  1IS8 A;  2WSC K;  1VF8 A;  1F8A B;  4MNM A;  3O5G A;  2M08 A;  2ZQT A;  1HKI A;  2XPB A;  2YBU A;  4P8W A;  5DIV A;  3LW5 G;  3UI4 A;  4R8Q A;  1ZBV A;  2A3C A;  4WKF A;  3JXV A;  1IX5 A;  1EHN A;  1FKH A;  1FKK A;  4ODL A;  1PIN A;  1FKB A;  2VN1 A;  3O5Q A;  3PR9 A;  4C02 B;  1FKT A;  3VEJ A;  1TFV A;  3WD1 A;  3KAD A;  1FBX A;  1EQ3 A;  2DT2 A;  3O5J A;  1A7X A;  4HAR A;  2DSU A;  5HW8 A;  2B31 A;  3LW5 K;  3CHD A;  4TW7 A;  1N3R A;  3ARP A;  3O5M A;  1FKJ A;  3TDB A;  3ALF A;  2FKE A;  3AS2 A;  3ALG A;  3MDY B;  1SYT A;  3WL1 A;  3CHC A;  4DZ2 A;  2DT0 A;  2F21 A;  2ZR4 A;  3W4R A;  1CTN A;  4G2P A;  4NNR A;  3ARW A;  1HJW A;  4L72 B;  4QT2 A;  4DRQ A;  4TYO A;  4U85 A;  2WSF K;  1FKL A;  3CGN A;  5DIU A;  2VCD A;  1OGG A;  1GTP A;  1QZ2 A;  3B8S A;  4J4N A;  3EIP A;  4ZPT R;  3ARY A;  1JNE A;  2JZV A;  4QZV B;  1FD9 A;  3ARS A;  3WQV A;  4DH0 A;  3TCZ A;  3O5K A;  5HW7 A;  4LAW A;  4J4O A;  1E6R A;  3UF8 A;  1NSG A;  1LG1 A;  3ARR A;  5I98 A;  2PV1 A;  3ART A;  1A8R A;  4NE3 B;  1QPL A;  1EL6 A;  4DWS A;  1OWQ A;  1W1V A;  2PPN A;  3I6C A;  1J4I A;  1E6P A;  1AIP C;  4NZC A;  2WLZ A;  1ZBK A;  5HWB A;  1NMV A;  2LKN A;  5HWC A;  1LJY A;  5GPR A;  5HBF A;  4ITZ A;  2MLY A;  5JH8 A;  2A3A A;  3KAC A;  2XP8 A;  3O5D A;  1NWU A;  1HKM A;  2M2A A;  3ODK A;  3NTP A;  1L1P A;  4DWS C;  4WKH A;  3ARU A;  1N3S A;  1FKD A;  1N1A A;  2O92 A;  3O5R A;  1E44 A;  3LUO A;  4E44 B;  4W9Q A;  2KO7 A;  2LO0 A;  1M5Y A;  2DT1 A;  5GPG A;  3PRB A;  1E9L A;  4IQ2 A;  3IKD A;  1HKK A;  1NWR A;  3FY1 A;  4IQC A;  1KT0 A;  3WD3 A;  3IHZ A;  4MPK A;  4U86 A;  4JFK A;  3KAF A;  4QPM A;  1W1P A; 
#chains in the Genus database with same CATH homology
 1FBX A;  1WPL A;  4DRB J;  1GTP A;  3BMB A;  1FB1 A;  4R8Q A;  4DRA E;  1N3S A;  3GTY X;  3B0B C;  1WUQ A;  1WM9 A;  4Q7J A;  1AIP C;  2P11 A;  1N3R A;  4E44 B;  1GRJ A;  2F23 A;  1EFU B;  2P4V A;  1A9C A;  2LO0 A;  2LNZ A;  2KR1 A;  2EUL A;  4DU6 A;  1IS8 A;  5DMZ A;  4JA3 A;  4NE5 B;  3GU0 A;  2ETN A;  1TFE A;  2PN0 A;  1N3T A;  3VEJ A;  1IS7 A;  1A8R A;  4NE3 B;  4NE6 B;  4QPM A;  1WUR A;  4E45 B;  1EL6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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