2PN0A

Prokaryotic transcription elongation factor grea/greb from nitrosomonas europaea
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
124
structure length
123
Chain Sequence
KPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Prokaryotic transcription elongation factor GreA/GreB
publication title Crystal structure of prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea.
rcsb
source organism Nitrosomonas europaea
molecule tags Transcription
total genus 29
structure length 123
sequence length 124
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 2pn0A01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 2pn0A02
1EFUB 1GRJA 2F23A 2EULA 1TFEA 3GU0A 1AIPC 3GTYX 3BMBA 2P4VA 4Q7JA 2PN0A 2ETNA
chains in the Genus database with same CATH superfamily
2A3EA 3BXWA 4WJXA 1KT1A 2ZR6A 3LW5K 3GPKA 3RM9A 2FDMA 4DWSB 4KQZA 1FKDA 3ARSA 1BL4A 2ITKA 1GOIA 1LG1A 1A9CA 1TFEA 2WM0A 2ZQVA 2A3CA 2XP7A 3UI5A 4MNKA 1OGGA 1W9VA 4QPMA 4P8UA 2LPVA 4U84A 3JYJA 4W5UA 2EULA 3ARPA 2G8ZA 1EHNA 3WQVA 2Y78A 3AS0A 3UI4A 2XP3A 2MLZA 3PRBA 2WSEG 2RURA 5BXJA 1H0GA 4NE6B 1N3SA 2G41A 1F8AB 1TFVA 3WD0A 3RM4A 1NSGA 3O5PA 3B9EA 1EDQA 1FKBA 4ODNA 4E44B 1UR9A 3B9DA 1FKLA 4ODMA 1FJDA 4DRKA 3ARXA 2WSFK 1N3RA 3ARQA 2PBCA 1LQ0A 3AS1A 1WURA 2LGOA 1C9HA 4JFMA 5HT1A 1WPLA 2ETNA 1NWUA 1XRVA 4IT4A 4TW8A 4AY1A 4W9OA 3KCEA 2L2SA 2MF9A 4LAYA 2RSEA 4ZPTR 4Z2JA 3PRDA 3TCZA 5DEZA 2Q5AA 1FAPA 1HJXA 4QT2A 4DIPA 1J4IA 1D7HA 2O01G 4IPXA 1L1PA 1RD6A 1FKJA 4IQ2A 3O5DA 5HWBA 4O2TA 5HW8A 1E44A 4W9PA 1K9TA 3FY1A 3JYMA 3B9AA 1FKRA 3IK8A 2MPHA 4QIBA 2B31A 3IHZA 2F4EA 2IF4A 3ALFA 4G50A 4IT6A 3CHFA 1B6CA 1WAWA 4L3NA 5DITA 1IS8A 2PPNA 2M1IA 4WIWA 1JCHB 4ODRA 2XP9A 3B7XA 2P11A 1U79A 4DH0A 1N1AA 1IX5A 5HW7A 3UQBA 4IQCA 2RUQA 4FAPA 1E15A 1QPLA 4R5EA 3IKGA 2ESCA 4WK9A 1FBXA 2YBUA 1X6LA 4DZ3A 1FB1A 4P8VA 1LL6A 3ARTA 3PA7A 1D7IA 2M2AA 2PV2A 1QPFA 4L72B 1E6NA 4BF8A 2FKEA 3UQAA 4W9QA 5HTGA 1WNOA 1W9UA 4DU6A 3KAGA 1FKIA 2KE0A 1SR0A 3CGNA 2XP5A 1FKSA 4LGXA 4MNJA 1JNTA 3PRAA 5HW6A 3AROA 4WKHA 1KFWA 4HBOA 1D6OA 4U86A 3O5MA 2KGJA 3WQWA 3CH9A 4MNLA 4LAVA 4NE5B 3UQIA 3TC5A 5JH8A 3WIJA 2OFNA 1GTPA 1W9PA 3G6LA 4TYOA 1JNEA 1LL4A 2D9FA 4TW6A 3KABA 1ZL1A 4ODPA 2F2DA 1W26A 1LL7A 1W1PA 1TCOC 1ZU8A 2MLYA 3WD4A 2WLYA 5DO2A 3KAHA 1CTNA 4R0XA 1N3TA 2WSCK 1BKFA 1E6RA 1FFQA 3PR9A 4ML4A 1HXVA 1FKKA 4DRMA 4DRBJ 1NWSA 3ARYA 3KAIA 1GUVA 2N87A 4MSPA 1T11A 3O5EA 3VEJA 5HUAA 1YATA 3WD2A 3WL1A 1AIPC 3WKZA 3LW5G 2LKNA 4DWSD 3VAWA 4Z2GA 4DRAE 2DPEA 4NZCA 2PPPA 3RFWA 3ARWA 2LJ4A 1NMVA 2ZQUA 1QZ2A 4C02B 4Q7NA 1EFUB 4P8WA 1JNSA 1HKKA 2XP6A 4DRPA 1OGBA 1FD9A 4TX0A 3O5RA 2B5UB 1Q1CA 2DT1A 3ARZA 2XP8A 3ODKA 1VF8A 5DIUA 3CHDA 5D75A 1ZBKA 2JZVA 4ODQA 3NRKA 3ARRA 3KZ7A 3AQUA 3O5OA 4MNMA 4J4NA 4S3JA 3WL0A 2WLZA 3O5LA 1NMWA 5GPRA 1D7JA 1ZK6A 1ZBVA 4URIA 4JFIA 2RUDA 2O92A 3O5FA 4DWSA 2XPAA 1EL6A 4XAKA 2WSFG 2AOSA 2MLXA 1ROTA 1WUQA 3B8SA 5GPGA 1HKJA 4ZPWR 4DRQA 1EIBA 3CZ8A 2UZ5A 4DRHA 2M08A 1HJVA 2ZQTA 1J4RA 1F40A 2KI3A 5HBFA 2F23A 2WSEK 4JA3A 2P4VA 4JFJA 3G6MA 4LAWA 1IS7A 4Z2LA 2DSZA 4ODKA 3W4RA 2DT2A 1JVWA 1YW5A 5B8IC 5HKGA 1Q6IA 1E6PA 1WM9A 2PV1A 2XP4A 4ODOA 3WD3A 4MPKA 1NH6A 5DF0A 3RM8A 3EIPA 3EY6A 3WH0A 1ZB5A 1HKIA 2QF8A 3GTYX 4Z2HA 1J6YA 3FAPA 4R8QA 1W1TA 3OA5A 1PINA 3AS2A 1KT0A 3NI6A 3NTPA 4JFKA 3O5GA 2OLHA 1H0IA 4MAVA 4U85A 5HWCA 3IKDA 1NWRA 1Q6HA 2ZR4A 3ALGA 2KO7A 4E45B 4QT3A 4KR0B 4P8XA 3KACA 2O9OA 1LJYA 3I6CA 1X6NA 2DSUA 2KR1A 2IUZA 1GPFA 5GQBA 2A3BA 1FKFA 2DG3A 4NSBA 2KR7A 4Q7JA 2F21A 1HJWA 1W1VA 3MDYB 1P5QA 4LAXA 1FKTA 2VCDA 4ZS6A 1Y0OA 4WKAA 4QZVB 4MGVA 2RUCA 1E6ZA 4HBEA 4FN2A 5I98A 1SYTA 1FFRA 3UI6A 4HARA 2DG9A 1A7XA 1EYMA 2ZQSA 1LG2A 2ZR5A 1FKHA 4PTMA 1JNDA 1GRJA 4ODLA 3O5IA 1ZCNA 4UDMA 2YBTA 3LUOA 1ROUA 4JFLA 1UR8A 2DT3A 4DRIA 5J6EA 4Z2IA 4DT4A 3TDBA 3CHCA 1D2KA 3BMBA 1WB0A 1R9HA 1Q6UA 4JYSA 2FAPA 2WSCG 1J4HA 4Q22A 2KFWA 1ZBWA 2PPOA 3O5KA 5DMZA 4DRJA 4GGQA 4DWSC 3CHEA 1ITXA 4NNRA 2VN1A 2DSVA 4DZ2A 1W1YA 5DIVA 3AS3A 4J4OA 4NE3B 1FKGA 4MTVA 2AWGA 3RMEA 3H9RB 4DROA 4G2PA 2PI6A 4ZPVR 2LO0A 4GIVA 1ZBCA 3CGMA 2A3AA 4DRNA 2K8IA 1M5YA 3RGCA 1OWQA 3GU0A 3KAFA 3UF8A 1A8RA 2XPBA 3ARVA 3ARUA 1HKMA 1E9LA 3OOBA 4Z2KA 2MNTA 1EQ3A 2DSWA 3WD1A 4S3KA 2RQSA 4TNSA 3KADA 4ITZA 4WKFA 4TW7A 2LNZA 3FXYA 1NWTA 2PV3A 1PBKA 1XHGA 2WK2A 3O5QA 3O5JA 2DT0A 1O6IA 2DG4A 3QOKA 3B0BC 4N19A 2PN0A 3JXVA
chains in the Genus database with same CATH topology
1GRJA 2F23A 2EULA 3GU0A 4JA3A 2P11A 4DU6A 1N3RA 2P4VA 1A8RA 3VEJA 4Q7JA 1IS7A 1WURA 1EL6A 1AIPC 1WPLA 4NE6B 4NE3B 1N3SA 4DRAE 2ETNA 1WM9A 1A9CA 1FBXA 1WUQA 1TFEA 1N3TA 4E45B 3BMBA 2LNZA 4NE5B 1FB1A 1EFUB 2LO0A 4DRBJ 3GTYX 4QPMA 4E44B 1GTPA 3B0BC 2PN0A 2KR1A 1IS8A 4R8QA 5DMZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EFU B;  1GRJ A;  2F23 A;  2EUL A;  1TFE A;  3GU0 A;  1AIP C;  3GTY X;  3BMB A;  2P4V A;  4Q7J A;  2PN0 A;  2ETN A; 
#chains in the Genus database with same CATH topology
 2A3E A;  3BXW A;  4WJX A;  1KT1 A;  2ZR6 A;  3LW5 K;  3GPK A;  3RM9 A;  2FDM A;  4DWS B;  4KQZ A;  1FKD A;  3ARS A;  1BL4 A;  2ITK A;  1GOI A;  1LG1 A;  1A9C A;  1TFE A;  2WM0 A;  2ZQV A;  2A3C A;  2XP7 A;  3UI5 A;  4MNK A;  1OGG A;  1W9V A;  4QPM A;  4P8U A;  2LPV A;  4U84 A;  3JYJ A;  4W5U A;  2EUL A;  3ARP A;  2G8Z A;  1EHN A;  3WQV A;  2Y78 A;  3AS0 A;  3UI4 A;  2XP3 A;  2MLZ A;  3PRB A;  2WSE G;  2RUR A;  5BXJ A;  1H0G A;  4NE6 B;  1N3S A;  2G41 A;  1F8A B;  1TFV A;  3WD0 A;  3RM4 A;  1NSG A;  3O5P A;  3B9E A;  1EDQ A;  1FKB A;  4ODN A;  4E44 B;  1UR9 A;  3B9D A;  1FKL A;  4ODM A;  1FJD A;  4DRK A;  3ARX A;  2WSF K;  1N3R A;  3ARQ A;  2PBC A;  1LQ0 A;  3AS1 A;  1WUR A;  2LGO A;  1C9H A;  4JFM A;  5HT1 A;  1WPL A;  2ETN A;  1NWU A;  1XRV A;  4IT4 A;  4TW8 A;  4AY1 A;  4W9O A;  3KCE A;  2L2S A;  2MF9 A;  4LAY A;  2RSE A;  4ZPT R;  4Z2J A;  3PRD A;  3TCZ A;  5DEZ A;  2Q5A A;  1FAP A;  1HJX A;  4QT2 A;  4DIP A;  1J4I A;  1D7H A;  2O01 G;  4IPX A;  1L1P A;  1RD6 A;  1FKJ A;  4IQ2 A;  3O5D A;  5HWB A;  4O2T A;  5HW8 A;  1E44 A;  4W9P A;  1K9T A;  3FY1 A;  3JYM A;  3B9A A;  1FKR A;  3IK8 A;  2MPH A;  4QIB A;  2B31 A;  3IHZ A;  2F4E A;  2IF4 A;  3ALF A;  4G50 A;  4IT6 A;  3CHF A;  1B6C A;  1WAW A;  4L3N A;  5DIT A;  1IS8 A;  2PPN A;  2M1I A;  4WIW A;  1JCH B;  4ODR A;  2XP9 A;  3B7X A;  2P11 A;  1U79 A;  4DH0 A;  1N1A A;  1IX5 A;  5HW7 A;  3UQB A;  4IQC A;  2RUQ A;  4FAP A;  1E15 A;  1QPL A;  4R5E A;  3IKG A;  2ESC A;  4WK9 A;  1FBX A;  2YBU A;  1X6L A;  4DZ3 A;  1FB1 A;  4P8V A;  1LL6 A;  3ART A;  3PA7 A;  1D7I A;  2M2A A;  2PV2 A;  1QPF A;  4L72 B;  1E6N A;  4BF8 A;  2FKE A;  3UQA A;  4W9Q A;  5HTG A;  1WNO A;  1W9U A;  4DU6 A;  3KAG A;  1FKI A;  2KE0 A;  1SR0 A;  3CGN A;  2XP5 A;  1FKS A;  4LGX A;  4MNJ A;  1JNT A;  3PRA A;  5HW6 A;  3ARO A;  4WKH A;  1KFW A;  4HBO A;  1D6O A;  4U86 A;  3O5M A;  2KGJ A;  3WQW A;  3CH9 A;  4MNL A;  4LAV A;  4NE5 B;  3UQI A;  3TC5 A;  5JH8 A;  3WIJ A;  2OFN A;  1GTP A;  1W9P A;  3G6L A;  4TYO A;  1JNE A;  1LL4 A;  2D9F A;  4TW6 A;  3KAB A;  1ZL1 A;  4ODP A;  2F2D A;  1W26 A;  1LL7 A;  1W1P A;  1TCO C;  1ZU8 A;  2MLY A;  3WD4 A;  2WLY A;  5DO2 A;  3KAH A;  1CTN A;  4R0X A;  1N3T A;  2WSC K;  1BKF A;  1E6R A;  1FFQ A;  3PR9 A;  4ML4 A;  1HXV A;  1FKK A;  4DRM A;  4DRB J;  1NWS A;  3ARY A;  3KAI A;  1GUV A;  2N87 A;  4MSP A;  1T11 A;  3O5E A;  3VEJ A;  5HUA A;  1YAT A;  3WD2 A;  3WL1 A;  1AIP C;  3WKZ A;  3LW5 G;  2LKN A;  4DWS D;  3VAW A;  4Z2G A;  4DRA E;  2DPE A;  4NZC A;  2PPP A;  3RFW A;  3ARW A;  2LJ4 A;  1NMV A;  2ZQU A;  1QZ2 A;  4C02 B;  4Q7N A;  1EFU B;  4P8W A;  1JNS A;  1HKK A;  2XP6 A;  4DRP A;  1OGB A;  1FD9 A;  4TX0 A;  3O5R A;  2B5U B;  1Q1C A;  2DT1 A;  3ARZ A;  2XP8 A;  3ODK A;  1VF8 A;  5DIU A;  3CHD A;  5D75 A;  1ZBK A;  2JZV A;  4ODQ A;  3NRK A;  3ARR A;  3KZ7 A;  3AQU A;  3O5O A;  4MNM A;  4J4N A;  4S3J A;  3WL0 A;  2WLZ A;  3O5L A;  1NMW A;  5GPR A;  1D7J A;  1ZK6 A;  1ZBV A;  4URI A;  4JFI A;  2RUD A;  2O92 A;  3O5F A;  4DWS A;  2XPA A;  1EL6 A;  4XAK A;  2WSF G;  2AOS A;  2MLX A;  1ROT A;  1WUQ A;  3B8S A;  5GPG A;  1HKJ A;  4ZPW R;  4DRQ A;  1EIB A;  3CZ8 A;  2UZ5 A;  4DRH A;  2M08 A;  1HJV A;  2ZQT A;  1J4R A;  1F40 A;  2KI3 A;  5HBF A;  2F23 A;  2WSE K;  4JA3 A;  2P4V A;  4JFJ A;  3G6M A;  4LAW A;  1IS7 A;  4Z2L A;  2DSZ A;  4ODK A;  3W4R A;  2DT2 A;  1JVW A;  1YW5 A;  5B8I C;  5HKG A;  1Q6I A;  1E6P A;  1WM9 A;  2PV1 A;  2XP4 A;  4ODO A;  3WD3 A;  4MPK A;  1NH6 A;  5DF0 A;  3RM8 A;  3EIP A;  3EY6 A;  3WH0 A;  1ZB5 A;  1HKI A;  2QF8 A;  3GTY X;  4Z2H A;  1J6Y A;  3FAP A;  4R8Q A;  1W1T A;  3OA5 A;  1PIN A;  3AS2 A;  1KT0 A;  3NI6 A;  3NTP A;  4JFK A;  3O5G A;  2OLH A;  1H0I A;  4MAV A;  4U85 A;  5HWC A;  3IKD A;  1NWR A;  1Q6H A;  2ZR4 A;  3ALG A;  2KO7 A;  4E45 B;  4QT3 A;  4KR0 B;  4P8X A;  3KAC A;  2O9O A;  1LJY A;  3I6C A;  1X6N A;  2DSU A;  2KR1 A;  2IUZ A;  1GPF A;  5GQB A;  2A3B A;  1FKF A;  2DG3 A;  4NSB A;  2KR7 A;  4Q7J A;  2F21 A;  1HJW A;  1W1V A;  3MDY B;  1P5Q A;  4LAX A;  1FKT A;  2VCD A;  4ZS6 A;  1Y0O A;  4WKA A;  4QZV B;  4MGV A;  2RUC A;  1E6Z A;  4HBE A;  4FN2 A;  5I98 A;  1SYT A;  1FFR A;  3UI6 A;  4HAR A;  2DG9 A;  1A7X A;  1EYM A;  2ZQS A;  1LG2 A;  2ZR5 A;  1FKH A;  4PTM A;  1JND A;  1GRJ A;  4ODL A;  3O5I A;  1ZCN A;  4UDM A;  2YBT A;  3LUO A;  1ROU A;  4JFL A;  1UR8 A;  2DT3 A;  4DRI A;  5J6E A;  4Z2I A;  4DT4 A;  3TDB A;  3CHC A;  1D2K A;  3BMB A;  1WB0 A;  1R9H A;  1Q6U A;  4JYS A;  2FAP A;  2WSC G;  1J4H A;  4Q22 A;  2KFW A;  1ZBW A;  2PPO A;  3O5K A;  5DMZ A;  4DRJ A;  4GGQ A;  4DWS C;  3CHE A;  1ITX A;  4NNR A;  2VN1 A;  2DSV A;  4DZ2 A;  1W1Y A;  5DIV A;  3AS3 A;  4J4O A;  4NE3 B;  1FKG A;  4MTV A;  2AWG A;  3RME A;  3H9R B;  4DRO A;  4G2P A;  2PI6 A;  4ZPV R;  2LO0 A;  4GIV A;  1ZBC A;  3CGM A;  2A3A A;  4DRN A;  2K8I A;  1M5Y A;  3RGC A;  1OWQ A;  3GU0 A;  3KAF A;  3UF8 A;  1A8R A;  2XPB A;  3ARV A;  3ARU A;  1HKM A;  1E9L A;  3OOB A;  4Z2K A;  2MNT A;  1EQ3 A;  2DSW A;  3WD1 A;  4S3K A;  2RQS A;  4TNS A;  3KAD A;  4ITZ A;  4WKF A;  4TW7 A;  2LNZ A;  3FXY A;  1NWT A;  2PV3 A;  1PBK A;  1XHG A;  2WK2 A;  3O5Q A;  3O5J A;  2DT0 A;  1O6I A;  2DG4 A;  3QOK A;  3B0B C;  4N19 A;  2PN0 A;  3JXV A; 
#chains in the Genus database with same CATH homology
 1GRJ A;  2F23 A;  2EUL A;  3GU0 A;  4JA3 A;  2P11 A;  4DU6 A;  1N3R A;  2P4V A;  1A8R A;  3VEJ A;  4Q7J A;  1IS7 A;  1WUR A;  1EL6 A;  1AIP C;  1WPL A;  4NE6 B;  4NE3 B;  1N3S A;  4DRA E;  2ETN A;  1WM9 A;  1A9C A;  1FBX A;  1WUQ A;  1TFE A;  1N3T A;  4E45 B;  3BMB A;  2LNZ A;  4NE5 B;  1FB1 A;  1EFU B;  2LO0 A;  4DRB J;  3GTY X;  4QPM A;  4E44 B;  1GTP A;  3B0B C;  2PN0 A;  2KR1 A;  1IS8 A;  4R8Q A;  5DMZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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