2PN0A

Prokaryotic transcription elongation factor grea/greb from nitrosomonas europaea
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
124
structure length
123
Chain Sequence
b'KPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Prokaryotic transcription elongation factor GreA/GreB
publication title Crystal structure of prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea.
rcsb
source organism Nitrosomonas europaea
molecule tags Transcription
total genus 29
structure length 123
sequence length 124
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 2pn0A01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 2pn0A02
2F23A 2ETNA 1GRJA 1EFUB 2PN0A 2P4VA 3BMBA 1TFEA 2EULA 4Q7JA 3GTYX 1AIPC 3GU0A
chains in the Genus database with same CATH superfamily
2LNZA 2F2DA 4DRNA 2FKEA 4R0XA 4WIWA 1FKJA 4MSPA 2VCDA 3KAIA 1ITXA 2DSUA 3B8SA 4DWSB 1OWQA 3RM4A 2WSFG 1SYTA 3TCZA 3WH0A 4DRIA 5HW7A 3UI4A 5HWCA 2P4VA 1JNSA 3O5LA 3ARWA 4LAYA 3JXVA 4U85A 1EQ3A 3WD1A 3WQWA 2MPHA 4LAWA 1E6RA 4DZ2A 2IUZA 2PPPA 4MNMA 1YATA 1A7XA 3O5PA 1ROTA 4ODKA 3ARSA 3RM9A 2VN1A 1ZB5A 1NMVA 1GPFA 4JFJA 4MAVA 3O5KA 4IT4A 4NNRA 1RD6A 4Q22A 2XP4A 2RQSA 2WSEG 2PPOA 3AS2A 4TW7A 2ETNA 1FKGA 3ARXA 4U86A 2PN0A 5DITA 3GU0A 1E15A 4MNLA 3OA5A 3LUOA 4DROA 4NZCA 1E6PA 1EHNA 4ZS6A 1ZBWA 2IF4A 4JFKA 2DT1A 3FXYA 4DWSA 4HBEA 1F40A 2KR7A 1W9VA 3KABA 3ARVA 1NWSA 3VEJA 3IK8A 3RM8A 3JYJA 1W1PA 3LW5G 1OGBA 5DEZA 3KAHA 1LQ0A 4NE5B 1JNEA 3TDBA 1SR0A 2LPVA 5DMZA 1F8AB 3TC5A 2WM0A 1GUVA 2O01G 1ZBKA 3EY6A 1K9TA 1J4HA 3W4RA 2XP9A 1HKKA 4MTVA 1PBKA 1ZK6A 2QF8A 4DRQA 1Y0OA 3IHZA 1W26A 4Z2JA 1R9HA 1NMWA 4JA3A 1H0IA 2WK2A 4QIBA 1NWTA 3JYMA 2AOSA 1HJXA 4IPXA 1LL7A 1ZBVA 4GGQA 1WAWA 1WM9A 2WSCK 3GPKA 1HKMA 2DT3A 4KQZA 3WD2A 1EIBA 1LG1A 2O92A 4WKHA 3KAGA 2XP5A 4Q7NA 3RGCA 3WL0A 1Q6UA 2RUQA 1HKIA 1WB0A 1NWUA 1XRVA 4PTMA 1OGGA 1IX5A 1EFUB 3O5GA 4UDMA 3O5QA 2KE0A 2L2SA 1EDQA 2DSZA 4ODQA 3QOKA 4QT2A 1E44A 4IQCA 5J6EA 2ITKA 1T11A 3WD3A 3WQVA 2ZQVA 4URIA 2XP3A 3O5DA 1Q1CA 2PV1A 3O5MA 4ODRA 4TW6A 4BF8A 3MDYB 5HW8A 2UZ5A 3WIJA 2MLYA 2KI3A 1ZCNA 2RUDA 1E6ZA 2WSEK 1YW5A 3CZ8A 4Z2KA 3G6LA 4KR0B 2XPAA 1WUQA 2KGJA 4GIVA 3CHCA 3ARPA 3PRBA 1H0GA 1EL6A 5I98A 2DT2A 1W1VA 2A3CA 3B9AA 3CHDA 1UR9A 4O2TA 4QZVB 5DO2A 1TFEA 1FFQA 1QPFA 2ZQSA 1LG2A 4U84A 2D9FA 1M5YA 3WL1A 4AY1A 1HKJA 4DRHA 4ODLA 4JFLA 4DIPA 2LKNA 4ZPWR 4HARA 4FN2A 1NWRA 1C9HA 1KT0A 1FKDA 1JCHB 2M2AA 2MF9A 1VF8A 5DIVA 4TNSA 1QPLA 3AS1A 1ZU8A 4E44B 4LGXA 1FKTA 4TYOA 2PV3A 3WD4A 5BXJA 3ARQA 3ARYA 1XHGA 1GOIA 4P8WA 1LL6A 1J4IA 2K8IA 4W9OA 4MNKA 1HXVA 4G50A 1JVWA 3NRKA 3AS3A 2XPBA 3ODKA 4TX0A 2DPEA 1ZL1A 1FBXA 1WNOA 3O5RA 1ROUA 2A3BA 1D7IA 1PINA 2DG4A 4W9QA 3KCEA 3PR9A 4S3KA 1FKSA 1FB1A 3G6MA 1TCOC 1W9PA 4P8XA 1KFWA 2YBTA 1W1TA 4ZPTR 2PPNA 3KADA 3ARZA 3PRAA 3KZ7A 3FY1A 2MNTA 2XP7A 3CH9A 1D6OA 2PV2A 1B6CA 2O9OA 1L1PA 5DF0A 1KT1A 4FAPA 3IKDA 3O5JA 1CTNA 1WURA 4MGVA 2OLHA 2FDMA 3O5EA 3OOBA 3AROA 2B5UB 4DRPA 2WSFK 1WPLA 1D7JA 4ODPA 3O5OA 4ML4A 2WLZA 1LJYA 1FKLA 2EULA 2G8ZA 3FAPA 1Q6IA 1FKBA 1HJVA 3BXWA 1FD9A 4HBOA 1D7HA 2WLYA 2ZQTA 3PRDA 1O6IA 3CHFA 3UF8A 3CHEA 3AQUA 3H9RB 1FFRA 4P8VA 2PBCA 4ZPVR 5HUAA 4DWSC 3B9EA 5GPRA 3UI5A 3VAWA 2ZR6A 2LJ4A 2XP8A 3I6CA 3ALFA 3PA7A 4QT3A 1FAPA 4E45B 4ODMA 4IT6A 2M08A 5HT1A 1FKHA 1X6NA 1LL4A 5GQBA 1N3SA 4DRMA 4MPKA 2WSCG 1EYMA 3UI6A 1FKRA 5HW6A 4JFMA 3CGNA 4Z2HA 5HWBA 1W9UA 4DU6A 2Q5AA 3BMBA 3RMEA 1A9CA 4Q7JA 1UR8A 4JFIA 1D2KA 4DRJA 4W5UA 1J6YA 2YBUA 5HKGA 4WK9A 4W9PA 3LW5K 5HTGA 2F23A 5GPGA 5HBFA 4N19A 1FJDA 2LO0A 4DZ3A 1JNTA 1A8RA 4C02B 1E6NA 4WKFA 1HJWA 2ZR4A 2P11A 2LGOA 5B8IC 1N3RA 2B31A 1FKFA 2RSEA 2MLXA 4QPMA 3RFWA 4TW8A 3WD0A 2F21A 3IKGA 1J4RA 4J4OA 2A3EA 3EIPA 2KR1A 3B9DA 2DSWA 4Z2IA 3B0BC 3AS0A 1GTPA 1IS7A 1Q6HA 3UQBA 4L3NA 4L72B 4WJXA 1X6LA 3KACA 1N3TA 4XAKA 2AWGA 4MNJA 2KO7A 4Z2GA 3NTPA 3CGMA 2RUCA 4LAVA 4ODNA 3UQIA 3O5FA 2DG9A 2ZR5A 5DIUA 4P8UA 2N87A 1QZ2A 3UQAA 1W1YA 4S3JA 4JYSA 4LAXA 1NSGA 4R5EA 3B7XA 2JZVA 3ARTA 1P5QA 1JNDA 4WKAA 1NH6A 4NE3B 1GRJA 2A3AA 1BKFA 4DH0A 3GTYX 2M1IA 2KFWA 1ZBCA 4DWSD 2Y78A 1FKIA 2F4EA 2OFNA 2DT0A 3KAFA 1E9LA 2FAPA 4NSBA 1AIPC 3ARUA 5JH8A 3ARRA 4Z2LA 4IQ2A 2RURA 3O5IA 1BL4A 4DT4A 2MLZA 4R8QA 1TFVA 1U79A 3NI6A 4DRKA 4DRAE 5D75A 3WKZA 1N1AA 4ODOA 1IS8A 3ALGA 4ITZA 2PI6A 2XP6A 2DG3A 4J4NA 2ZQUA 2DSVA 4NE6B 4G2PA 1FKKA 2ESCA 2G41A 4DRBJ
chains in the Genus database with same CATH topology
2EULA 2F23A 2ETNA 2LNZA 2KR1A 1WUQA 3B0BC 2PN0A 4R8QA 1GTPA 1WM9A 1IS7A 2LO0A 1N3SA 4NE5B 3GU0A 1FBXA 4DRAE 1EL6A 4E44B 1A8RA 5DMZA 4NE3B 1GRJA 2P11A 1IS8A 1TFEA 1N3TA 3GTYX 1WURA 1FB1A 1N3RA 4QPMA 4DU6A 3BMBA 1WPLA 1A9CA 4NE6B 4Q7JA 1AIPC 1EFUB 2P4VA 4E45B 3VEJA 4JA3A 4DRBJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2F23 A;  2ETN A;  1GRJ A;  1EFU B;  2PN0 A;  2P4V A;  3BMB A;  1TFE A;  2EUL A;  4Q7J A;  3GTY X;  1AIP C;  3GU0 A; 
#chains in the Genus database with same CATH topology
 2LNZ A;  2F2D A;  4DRN A;  2FKE A;  4R0X A;  4WIW A;  1FKJ A;  4MSP A;  2VCD A;  3KAI A;  1ITX A;  2DSU A;  3B8S A;  4DWS B;  1OWQ A;  3RM4 A;  2WSF G;  1SYT A;  3TCZ A;  3WH0 A;  4DRI A;  5HW7 A;  3UI4 A;  5HWC A;  2P4V A;  1JNS A;  3O5L A;  3ARW A;  4LAY A;  3JXV A;  4U85 A;  1EQ3 A;  3WD1 A;  3WQW A;  2MPH A;  4LAW A;  1E6R A;  4DZ2 A;  2IUZ A;  2PPP A;  4MNM A;  1YAT A;  1A7X A;  3O5P A;  1ROT A;  4ODK A;  3ARS A;  3RM9 A;  2VN1 A;  1ZB5 A;  1NMV A;  1GPF A;  4JFJ A;  4MAV A;  3O5K A;  4IT4 A;  4NNR A;  1RD6 A;  4Q22 A;  2XP4 A;  2RQS A;  2WSE G;  2PPO A;  3AS2 A;  4TW7 A;  2ETN A;  1FKG A;  3ARX A;  4U86 A;  2PN0 A;  5DIT A;  3GU0 A;  1E15 A;  4MNL A;  3OA5 A;  3LUO A;  4DRO A;  4NZC A;  1E6P A;  1EHN A;  4ZS6 A;  1ZBW A;  2IF4 A;  4JFK A;  2DT1 A;  3FXY A;  4DWS A;  4HBE A;  1F40 A;  2KR7 A;  1W9V A;  3KAB A;  3ARV A;  1NWS A;  3VEJ A;  3IK8 A;  3RM8 A;  3JYJ A;  1W1P A;  3LW5 G;  1OGB A;  5DEZ A;  3KAH A;  1LQ0 A;  4NE5 B;  1JNE A;  3TDB A;  1SR0 A;  2LPV A;  5DMZ A;  1F8A B;  3TC5 A;  2WM0 A;  1GUV A;  2O01 G;  1ZBK A;  3EY6 A;  1K9T A;  1J4H A;  3W4R A;  2XP9 A;  1HKK A;  4MTV A;  1PBK A;  1ZK6 A;  2QF8 A;  4DRQ A;  1Y0O A;  3IHZ A;  1W26 A;  4Z2J A;  1R9H A;  1NMW A;  4JA3 A;  1H0I A;  2WK2 A;  4QIB A;  1NWT A;  3JYM A;  2AOS A;  1HJX A;  4IPX A;  1LL7 A;  1ZBV A;  4GGQ A;  1WAW A;  1WM9 A;  2WSC K;  3GPK A;  1HKM A;  2DT3 A;  4KQZ A;  3WD2 A;  1EIB A;  1LG1 A;  2O92 A;  4WKH A;  3KAG A;  2XP5 A;  4Q7N A;  3RGC A;  3WL0 A;  1Q6U A;  2RUQ A;  1HKI A;  1WB0 A;  1NWU A;  1XRV A;  4PTM A;  1OGG A;  1IX5 A;  1EFU B;  3O5G A;  4UDM A;  3O5Q A;  2KE0 A;  2L2S A;  1EDQ A;  2DSZ A;  4ODQ A;  3QOK A;  4QT2 A;  1E44 A;  4IQC A;  5J6E A;  2ITK A;  1T11 A;  3WD3 A;  3WQV A;  2ZQV A;  4URI A;  2XP3 A;  3O5D A;  1Q1C A;  2PV1 A;  3O5M A;  4ODR A;  4TW6 A;  4BF8 A;  3MDY B;  5HW8 A;  2UZ5 A;  3WIJ A;  2MLY A;  2KI3 A;  1ZCN A;  2RUD A;  1E6Z A;  2WSE K;  1YW5 A;  3CZ8 A;  4Z2K A;  3G6L A;  4KR0 B;  2XPA A;  1WUQ A;  2KGJ A;  4GIV A;  3CHC A;  3ARP A;  3PRB A;  1H0G A;  1EL6 A;  5I98 A;  2DT2 A;  1W1V A;  2A3C A;  3B9A A;  3CHD A;  1UR9 A;  4O2T A;  4QZV B;  5DO2 A;  1TFE A;  1FFQ A;  1QPF A;  2ZQS A;  1LG2 A;  4U84 A;  2D9F A;  1M5Y A;  3WL1 A;  4AY1 A;  1HKJ A;  4DRH A;  4ODL A;  4JFL A;  4DIP A;  2LKN A;  4ZPW R;  4HAR A;  4FN2 A;  1NWR A;  1C9H A;  1KT0 A;  1FKD A;  1JCH B;  2M2A A;  2MF9 A;  1VF8 A;  5DIV A;  4TNS A;  1QPL A;  3AS1 A;  1ZU8 A;  4E44 B;  4LGX A;  1FKT A;  4TYO A;  2PV3 A;  3WD4 A;  5BXJ A;  3ARQ A;  3ARY A;  1XHG A;  1GOI A;  4P8W A;  1LL6 A;  1J4I A;  2K8I A;  4W9O A;  4MNK A;  1HXV A;  4G50 A;  1JVW A;  3NRK A;  3AS3 A;  2XPB A;  3ODK A;  4TX0 A;  2DPE A;  1ZL1 A;  1FBX A;  1WNO A;  3O5R A;  1ROU A;  2A3B A;  1D7I A;  1PIN A;  2DG4 A;  4W9Q A;  3KCE A;  3PR9 A;  4S3K A;  1FKS A;  1FB1 A;  3G6M A;  1TCO C;  1W9P A;  4P8X A;  1KFW A;  2YBT A;  1W1T A;  4ZPT R;  2PPN A;  3KAD A;  3ARZ A;  3PRA A;  3KZ7 A;  3FY1 A;  2MNT A;  2XP7 A;  3CH9 A;  1D6O A;  2PV2 A;  1B6C A;  2O9O A;  1L1P A;  5DF0 A;  1KT1 A;  4FAP A;  3IKD A;  3O5J A;  1CTN A;  1WUR A;  4MGV A;  2OLH A;  2FDM A;  3O5E A;  3OOB A;  3ARO A;  2B5U B;  4DRP A;  2WSF K;  1WPL A;  1D7J A;  4ODP A;  3O5O A;  4ML4 A;  2WLZ A;  1LJY A;  1FKL A;  2EUL A;  2G8Z A;  3FAP A;  1Q6I A;  1FKB A;  1HJV A;  3BXW A;  1FD9 A;  4HBO A;  1D7H A;  2WLY A;  2ZQT A;  3PRD A;  1O6I A;  3CHF A;  3UF8 A;  3CHE A;  3AQU A;  3H9R B;  1FFR A;  4P8V A;  2PBC A;  4ZPV R;  5HUA A;  4DWS C;  3B9E A;  5GPR A;  3UI5 A;  3VAW A;  2ZR6 A;  2LJ4 A;  2XP8 A;  3I6C A;  3ALF A;  3PA7 A;  4QT3 A;  1FAP A;  4E45 B;  4ODM A;  4IT6 A;  2M08 A;  5HT1 A;  1FKH A;  1X6N A;  1LL4 A;  5GQB A;  1N3S A;  4DRM A;  4MPK A;  2WSC G;  1EYM A;  3UI6 A;  1FKR A;  5HW6 A;  4JFM A;  3CGN A;  4Z2H A;  5HWB A;  1W9U A;  4DU6 A;  2Q5A A;  3BMB A;  3RME A;  1A9C A;  4Q7J A;  1UR8 A;  4JFI A;  1D2K A;  4DRJ A;  4W5U A;  1J6Y A;  2YBU A;  5HKG A;  4WK9 A;  4W9P A;  3LW5 K;  5HTG A;  2F23 A;  5GPG A;  5HBF A;  4N19 A;  1FJD A;  2LO0 A;  4DZ3 A;  1JNT A;  1A8R A;  4C02 B;  1E6N A;  4WKF A;  1HJW A;  2ZR4 A;  2P11 A;  2LGO A;  5B8I C;  1N3R A;  2B31 A;  1FKF A;  2RSE A;  2MLX A;  4QPM A;  3RFW A;  4TW8 A;  3WD0 A;  2F21 A;  3IKG A;  1J4R A;  4J4O A;  2A3E A;  3EIP A;  2KR1 A;  3B9D A;  2DSW A;  4Z2I A;  3B0B C;  3AS0 A;  1GTP A;  1IS7 A;  1Q6H A;  3UQB A;  4L3N A;  4L72 B;  4WJX A;  1X6L A;  3KAC A;  1N3T A;  4XAK A;  2AWG A;  4MNJ A;  2KO7 A;  4Z2G A;  3NTP A;  3CGM A;  2RUC A;  4LAV A;  4ODN A;  3UQI A;  3O5F A;  2DG9 A;  2ZR5 A;  5DIU A;  4P8U A;  2N87 A;  1QZ2 A;  3UQA A;  1W1Y A;  4S3J A;  4JYS A;  4LAX A;  1NSG A;  4R5E A;  3B7X A;  2JZV A;  3ART A;  1P5Q A;  1JND A;  4WKA A;  1NH6 A;  4NE3 B;  1GRJ A;  2A3A A;  1BKF A;  4DH0 A;  3GTY X;  2M1I A;  2KFW A;  1ZBC A;  4DWS D;  2Y78 A;  1FKI A;  2F4E A;  2OFN A;  2DT0 A;  3KAF A;  1E9L A;  2FAP A;  4NSB A;  1AIP C;  3ARU A;  5JH8 A;  3ARR A;  4Z2L A;  4IQ2 A;  2RUR A;  3O5I A;  1BL4 A;  4DT4 A;  2MLZ A;  4R8Q A;  1TFV A;  1U79 A;  3NI6 A;  4DRK A;  4DRA E;  5D75 A;  3WKZ A;  1N1A A;  4ODO A;  1IS8 A;  3ALG A;  4ITZ A;  2PI6 A;  2XP6 A;  2DG3 A;  4J4N A;  2ZQU A;  2DSV A;  4NE6 B;  4G2P A;  1FKK A;  2ESC A;  2G41 A;  4DRB J; 
#chains in the Genus database with same CATH homology
 2EUL A;  2F23 A;  2ETN A;  2LNZ A;  2KR1 A;  1WUQ A;  3B0B C;  2PN0 A;  4R8Q A;  1GTP A;  1WM9 A;  1IS7 A;  2LO0 A;  1N3S A;  4NE5 B;  3GU0 A;  1FBX A;  4DRA E;  1EL6 A;  4E44 B;  1A8R A;  5DMZ A;  4NE3 B;  1GRJ A;  2P11 A;  1IS8 A;  1TFE A;  1N3T A;  3GTY X;  1WUR A;  1FB1 A;  1N3R A;  4QPM A;  4DU6 A;  3BMB A;  1WPL A;  1A9C A;  4NE6 B;  4Q7J A;  1AIP C;  1EFU B;  2P4V A;  4E45 B;  3VEJ A;  4JA3 A;  4DRB J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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