2PN0A

Prokaryotic transcription elongation factor grea/greb from nitrosomonas europaea
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
124
structure length
123
Chain Sequence
KPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea.
rcsb
source organism Nitrosomonas europaea
molecule tags Transcription
molecule keywords Prokaryotic transcription elongation factor GreA/GreB
total genus 29
structure length 123
sequence length 124
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 2pn0A01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 2pn0A02
3GU0A 4Q7JA 2EULA 1AIPC 2P4VA 2PN0A 1EFUB 2F23A 2ETNA 1GRJA 3GTYX 3BMBA 1TFEA
chains in the Genus database with same CATH superfamily
4NNRA 3CH9A 2WM0A 1W1VA 1NWUA 2XPBA 4JA3A 5JH8A 4GGQA 4WIWA 1WPLA 2DG3A 2FAPA 1KT1A 3TCZA 4DWSC 1XHGA 2M1IA 3WD1A 1P5QA 1FKKA 1FD9A 1TFVA 4LGXA 2PPNA 3CHDA 1OWQA 1E6PA 1FKSA 2MLZA 4Q7JA 1VF8A 3KAFA 4DZ3A 4MSPA 4DRMA 3ARVA 4QT2A 2B31A 1LQ0A 2LGOA 4ODNA 1EQ3A 4E45B 2PPPA 1FKBA 1E6NA 2VN1A 1FB1A 1OGGA 3WQWA 3BXWA 2RUQA 3PRAA 3MDYB 4WKAA 1GTPA 3RM9A 2O01G 3KACA 2F4EA 5HKGA 3LW5G 1KFWA 1LJYA 1ZBKA 2KI3A 1HJVA 2L2SA 4JFMA 4BF8A 5B8IC 2M08A 2B5UB 1SR0A 3WD2A 4Z2IA 2M2AA 2PV3A 1WURA 5DITA 4ZPWR 2JZVA 3O5PA 4IQCA 5J6EA 3I6CA 1FKGA 4LAYA 1M5YA 5HTGA 4L72B 1FKFA 4U85A 5HT1A 2WK2A 3WL0A 2PBCA 1NWTA 4W9PA 1LL7A 1JNDA 3O5OA 4Q7NA 4FN2A 2A3EA 3PRDA 2LNZA 2Q5AA 5DF0A 5DMZA 1IS8A 1E6RA 3AS2A 4UDMA 1YW5A 2PN0A 1W1TA 3AS0A 1H0GA 2XP4A 1HKIA 3KAGA 2ZQVA 3OA5A 2OFNA 2G8ZA 1K9TA 5DIUA 1N3RA 4DRKA 1YATA 5DO2A 5GPRA 4C02B 3G6LA 2DSZA 4Z2HA 1JNSA 4MGVA 4IT6A 3UI5A 4QT3A 2XP6A 1EHNA 2ESCA 4DRJA 3CHEA 1FAPA 1E44A 5HW8A 4PTMA 3B9DA 5GQBA 3ARXA 4O2TA 4W9QA 2DT2A 3IK8A 2MPHA 1GUVA 3RMEA 2WLYA 1NMVA 1BKFA 4WJXA 4ZPVR 2XP8A 3NI6A 4J4OA 3KCEA 4P8UA 3O5KA 4Z2LA 2IF4A 3JYJA 2DSWA 2FKEA 3EY6A 4ML4A 4Q22A 3UF8A 1LL6A 2LPVA 3O5IA 1FFQA 3GTYX 1FKDA 1A9CA 4JFJA 1ZBWA 2YBUA 2MLYA 1LG1A 2DT0A 3B9EA 3RM8A 4ODQA 3UQAA 1ZB5A 3PA7A 2AWGA 3QOKA 4ODLA 3UQBA 3ARWA 2RSEA 3JYMA 4WK9A 1ZU8A 3O5LA 3KADA 1FKIA 1A8RA 3FXYA 4JFLA 1FKHA 3ARTA 4ODRA 4L3NA 1FKTA 2DG4A 3JXVA 3O5RA 2O9OA 2DG9A 3G6MA 1LL4A 5HW7A 3WQVA 4MNJA 3UQIA 1WUQA 3LUOA 2ZQTA 4DRQA 4DRNA 1E15A 3PRBA 3NTPA 1D6OA 3O5GA 3AS3A 5GPGA 2MF9A 2PV2A 4AY1A 2UZ5A 1FKRA 4LAVA 3FY1A 3KAHA 2IUZA 2WLZA 4DWSB 1JNEA 2YBTA 1J6YA 1FFRA 1NMWA 2KE0A 3BMBA 3H9RB 4U84A 1W1PA 3TC5A 1EDQA 2XPAA 1QPLA 1KT0A 1ZL1A 2OLHA 1AIPC 2WSEG 5D75A 2P11A 1QPFA 3KAIA 3KZ7A 1IS7A 4QPMA 1TFEA 2ZR6A 4FAPA 2LO0A 2WSEK 2FDMA 1E9LA 1D7JA 3ARYA 4JFKA 2DT1A 2G41A 3WIJA 2Y78A 1F8AB 4MNMA 1WM9A 4DT4A 2MNTA 4HBEA 5DEZA 4TNSA 1FKJA 3CGNA 3CGMA 2PI6A 4GIVA 1NWSA 3GPKA 1Y0OA 3OOBA 3TDBA 4ODMA 4P8VA 2KR7A 3WL1A 1Q6HA 3AS1A 2RUDA 4G50A 1FKLA 3O5MA 1ZBVA 3B7XA 4S3KA 1F40A 3WH0A 4Z2GA 3B0BC 2O92A 3ODKA 1W9VA 1B6CA 2LJ4A 3RM4A 1ZK6A 5HUAA 2MLXA 2XP3A 5BXJA 3UI6A 3CHCA 3O5FA 1OGBA 3KABA 3LW5K 1W9PA 1NWRA 1J4IA 1ZBCA 5HW6A 2KR1A 1Q6UA 1NSGA 4NE6B 1HKMA 1GPFA 1HXVA 3RFWA 3O5QA 1D7IA 3RGCA 1PBKA 4IT4A 4ZS6A 5I98A 2A3BA 3B8SA 4JFIA 4TW6A 1HKKA 2LKNA 1LG2A 4MAVA 1XRVA 3O5DA 1X6LA 4Z2JA 4Z2KA 1N3TA 5DIVA 3IKDA 3ALFA 1EL6A 4WKHA 4DROA 3VEJA 3ARRA 1ZCNA 3ARSA 2WSCK 4DRBJ 1N1AA 4N19A 3AQUA 2QF8A 4NSBA 4ODOA 1Q6IA 2KO7A 4NE3B 1PINA 4J4NA 4DIPA 1SYTA 4IQ2A 4DU6A 4DWSA 4TX0A 1JVWA 4HBOA 1J4RA 1HJWA 2XP5A 4MTVA 1J4HA 2ZQSA 4R5EA 2K8IA 3WD4A 1JCHB 1C9HA 1A7XA 4QZVB 2PPOA 3GU0A 3ARUA 1WAWA 2KGJA 4MNLA 1T11A 1WB0A 2WSFK 4S3JA 1FBXA 2DPEA 3AROA 2A3CA 3EIPA 1UR8A 1WNOA 2F21A 1EFUB 1HKJA 1UR9A 1JNTA 3ARPA 1ROTA 1W1YA 3O5EA 3IKGA 3ARQA 4P8WA 4XAKA 2RURA 2N87A 4KQZA 4G2PA 1EIBA 2DSUA 2ZQUA 4QIBA 1EYMA 3WKZA 4JYSA 1D2KA 1R9HA 4TYOA 3UI4A 3FAPA 2EULA 2P4VA 2ZR4A 4R0XA 4TW7A 1O6IA 2ZR5A 1BL4A 3CHFA 4NE5B 2VCDA 1Q1CA 4U86A 1NH6A 2RQSA 3CZ8A 4MPKA 1E6ZA 4DZ2A 3WD0A 2PV1A 3VAWA 1ITXA 4ODKA 3PR9A 3ALGA 2XP7A 1GOIA 4ZPTR 4ITZA 1H0IA 4DRAE 4LAWA 4KR0B 4DRHA 2DT3A 1CTNA 2ETNA 1ROUA 2KFWA 1U79A 4TW8A 4WKFA 3B9AA 3W4RA 4R8QA 4MNKA 3O5JA 2ITKA 4DRPA 3IHZA 2F2DA 1L1PA 3ARZA 4NZCA 3WD3A 4ODPA 1GRJA 4DRIA 1HJXA 4DWSD 2DSVA 4URIA 2WSCG 2RUCA 4E44B 4HARA 4W9OA 4W5UA 4IPXA 4LAXA 5HWCA 1X6NA 4P8XA 2XP9A 4DH0A 5HBFA 2F23A 1N3SA 2WSFG 2D9FA 1D7HA 2A3AA 1IX5A 1W9UA 1FJDA 5HWBA 1W26A 1TCOC 1RD6A 2AOSA 3NRKA 1QZ2A
chains in the Genus database with same CATH topology
1AIPC 1N3TA 2P11A 1GTPA 3GTYX 1GRJA 1EL6A 1IS7A 4QPMA 1A8RA 1TFEA 1A9CA 4Q7JA 2LO0A 4JA3A 3VEJA 2KR1A 2LNZA 4E44B 5DMZA 1IS8A 4DRAE 4NE6B 3GU0A 4DRBJ 2EULA 1WPLA 2P4VA 2PN0A 3B0BC 2F23A 2ETNA 1N3SA 4E45B 1FBXA 1WM9A 3BMBA 1WURA 1WUQA 4NE5B 1N3RA 4NE3B 1EFUB 4R8QA 4DU6A 1FB1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GU0 A;  4Q7J A;  2EUL A;  1AIP C;  2P4V A;  2PN0 A;  1EFU B;  2F23 A;  2ETN A;  1GRJ A;  3GTY X;  3BMB A;  1TFE A; 
#chains in the Genus database with same CATH topology
 4NNR A;  3CH9 A;  2WM0 A;  1W1V A;  1NWU A;  2XPB A;  4JA3 A;  5JH8 A;  4GGQ A;  4WIW A;  1WPL A;  2DG3 A;  2FAP A;  1KT1 A;  3TCZ A;  4DWS C;  1XHG A;  2M1I A;  3WD1 A;  1P5Q A;  1FKK A;  1FD9 A;  1TFV A;  4LGX A;  2PPN A;  3CHD A;  1OWQ A;  1E6P A;  1FKS A;  2MLZ A;  4Q7J A;  1VF8 A;  3KAF A;  4DZ3 A;  4MSP A;  4DRM A;  3ARV A;  4QT2 A;  2B31 A;  1LQ0 A;  2LGO A;  4ODN A;  1EQ3 A;  4E45 B;  2PPP A;  1FKB A;  1E6N A;  2VN1 A;  1FB1 A;  1OGG A;  3WQW A;  3BXW A;  2RUQ A;  3PRA A;  3MDY B;  4WKA A;  1GTP A;  3RM9 A;  2O01 G;  3KAC A;  2F4E A;  5HKG A;  3LW5 G;  1KFW A;  1LJY A;  1ZBK A;  2KI3 A;  1HJV A;  2L2S A;  4JFM A;  4BF8 A;  5B8I C;  2M08 A;  2B5U B;  1SR0 A;  3WD2 A;  4Z2I A;  2M2A A;  2PV3 A;  1WUR A;  5DIT A;  4ZPW R;  2JZV A;  3O5P A;  4IQC A;  5J6E A;  3I6C A;  1FKG A;  4LAY A;  1M5Y A;  5HTG A;  4L72 B;  1FKF A;  4U85 A;  5HT1 A;  2WK2 A;  3WL0 A;  2PBC A;  1NWT A;  4W9P A;  1LL7 A;  1JND A;  3O5O A;  4Q7N A;  4FN2 A;  2A3E A;  3PRD A;  2LNZ A;  2Q5A A;  5DF0 A;  5DMZ A;  1IS8 A;  1E6R A;  3AS2 A;  4UDM A;  1YW5 A;  2PN0 A;  1W1T A;  3AS0 A;  1H0G A;  2XP4 A;  1HKI A;  3KAG A;  2ZQV A;  3OA5 A;  2OFN A;  2G8Z A;  1K9T A;  5DIU A;  1N3R A;  4DRK A;  1YAT A;  5DO2 A;  5GPR A;  4C02 B;  3G6L A;  2DSZ A;  4Z2H A;  1JNS A;  4MGV A;  4IT6 A;  3UI5 A;  4QT3 A;  2XP6 A;  1EHN A;  2ESC A;  4DRJ A;  3CHE A;  1FAP A;  1E44 A;  5HW8 A;  4PTM A;  3B9D A;  5GQB A;  3ARX A;  4O2T A;  4W9Q A;  2DT2 A;  3IK8 A;  2MPH A;  1GUV A;  3RME A;  2WLY A;  1NMV A;  1BKF A;  4WJX A;  4ZPV R;  2XP8 A;  3NI6 A;  4J4O A;  3KCE A;  4P8U A;  3O5K A;  4Z2L A;  2IF4 A;  3JYJ A;  2DSW A;  2FKE A;  3EY6 A;  4ML4 A;  4Q22 A;  3UF8 A;  1LL6 A;  2LPV A;  3O5I A;  1FFQ A;  3GTY X;  1FKD A;  1A9C A;  4JFJ A;  1ZBW A;  2YBU A;  2MLY A;  1LG1 A;  2DT0 A;  3B9E A;  3RM8 A;  4ODQ A;  3UQA A;  1ZB5 A;  3PA7 A;  2AWG A;  3QOK A;  4ODL A;  3UQB A;  3ARW A;  2RSE A;  3JYM A;  4WK9 A;  1ZU8 A;  3O5L A;  3KAD A;  1FKI A;  1A8R A;  3FXY A;  4JFL A;  1FKH A;  3ART A;  4ODR A;  4L3N A;  1FKT A;  2DG4 A;  3JXV A;  3O5R A;  2O9O A;  2DG9 A;  3G6M A;  1LL4 A;  5HW7 A;  3WQV A;  4MNJ A;  3UQI A;  1WUQ A;  3LUO A;  2ZQT A;  4DRQ A;  4DRN A;  1E15 A;  3PRB A;  3NTP A;  1D6O A;  3O5G A;  3AS3 A;  5GPG A;  2MF9 A;  2PV2 A;  4AY1 A;  2UZ5 A;  1FKR A;  4LAV A;  3FY1 A;  3KAH A;  2IUZ A;  2WLZ A;  4DWS B;  1JNE A;  2YBT A;  1J6Y A;  1FFR A;  1NMW A;  2KE0 A;  3BMB A;  3H9R B;  4U84 A;  1W1P A;  3TC5 A;  1EDQ A;  2XPA A;  1QPL A;  1KT0 A;  1ZL1 A;  2OLH A;  1AIP C;  2WSE G;  5D75 A;  2P11 A;  1QPF A;  3KAI A;  3KZ7 A;  1IS7 A;  4QPM A;  1TFE A;  2ZR6 A;  4FAP A;  2LO0 A;  2WSE K;  2FDM A;  1E9L A;  1D7J A;  3ARY A;  4JFK A;  2DT1 A;  2G41 A;  3WIJ A;  2Y78 A;  1F8A B;  4MNM A;  1WM9 A;  4DT4 A;  2MNT A;  4HBE A;  5DEZ A;  4TNS A;  1FKJ A;  3CGN A;  3CGM A;  2PI6 A;  4GIV A;  1NWS A;  3GPK A;  1Y0O A;  3OOB A;  3TDB A;  4ODM A;  4P8V A;  2KR7 A;  3WL1 A;  1Q6H A;  3AS1 A;  2RUD A;  4G50 A;  1FKL A;  3O5M A;  1ZBV A;  3B7X A;  4S3K A;  1F40 A;  3WH0 A;  4Z2G A;  3B0B C;  2O92 A;  3ODK A;  1W9V A;  1B6C A;  2LJ4 A;  3RM4 A;  1ZK6 A;  5HUA A;  2MLX A;  2XP3 A;  5BXJ A;  3UI6 A;  3CHC A;  3O5F A;  1OGB A;  3KAB A;  3LW5 K;  1W9P A;  1NWR A;  1J4I A;  1ZBC A;  5HW6 A;  2KR1 A;  1Q6U A;  1NSG A;  4NE6 B;  1HKM A;  1GPF A;  1HXV A;  3RFW A;  3O5Q A;  1D7I A;  3RGC A;  1PBK A;  4IT4 A;  4ZS6 A;  5I98 A;  2A3B A;  3B8S A;  4JFI A;  4TW6 A;  1HKK A;  2LKN A;  1LG2 A;  4MAV A;  1XRV A;  3O5D A;  1X6L A;  4Z2J A;  4Z2K A;  1N3T A;  5DIV A;  3IKD A;  3ALF A;  1EL6 A;  4WKH A;  4DRO A;  3VEJ A;  3ARR A;  1ZCN A;  3ARS A;  2WSC K;  4DRB J;  1N1A A;  4N19 A;  3AQU A;  2QF8 A;  4NSB A;  4ODO A;  1Q6I A;  2KO7 A;  4NE3 B;  1PIN A;  4J4N A;  4DIP A;  1SYT A;  4IQ2 A;  4DU6 A;  4DWS A;  4TX0 A;  1JVW A;  4HBO A;  1J4R A;  1HJW A;  2XP5 A;  4MTV A;  1J4H A;  2ZQS A;  4R5E A;  2K8I A;  3WD4 A;  1JCH B;  1C9H A;  1A7X A;  4QZV B;  2PPO A;  3GU0 A;  3ARU A;  1WAW A;  2KGJ A;  4MNL A;  1T11 A;  1WB0 A;  2WSF K;  4S3J A;  1FBX A;  2DPE A;  3ARO A;  2A3C A;  3EIP A;  1UR8 A;  1WNO A;  2F21 A;  1EFU B;  1HKJ A;  1UR9 A;  1JNT A;  3ARP A;  1ROT A;  1W1Y A;  3O5E A;  3IKG A;  3ARQ A;  4P8W A;  4XAK A;  2RUR A;  2N87 A;  4KQZ A;  4G2P A;  1EIB A;  2DSU A;  2ZQU A;  4QIB A;  1EYM A;  3WKZ A;  4JYS A;  1D2K A;  1R9H A;  4TYO A;  3UI4 A;  3FAP A;  2EUL A;  2P4V A;  2ZR4 A;  4R0X A;  4TW7 A;  1O6I A;  2ZR5 A;  1BL4 A;  3CHF A;  4NE5 B;  2VCD A;  1Q1C A;  4U86 A;  1NH6 A;  2RQS A;  3CZ8 A;  4MPK A;  1E6Z A;  4DZ2 A;  3WD0 A;  2PV1 A;  3VAW A;  1ITX A;  4ODK A;  3PR9 A;  3ALG A;  2XP7 A;  1GOI A;  4ZPT R;  4ITZ A;  1H0I A;  4DRA E;  4LAW A;  4KR0 B;  4DRH A;  2DT3 A;  1CTN A;  2ETN A;  1ROU A;  2KFW A;  1U79 A;  4TW8 A;  4WKF A;  3B9A A;  3W4R A;  4R8Q A;  4MNK A;  3O5J A;  2ITK A;  4DRP A;  3IHZ A;  2F2D A;  1L1P A;  3ARZ A;  4NZC A;  3WD3 A;  4ODP A;  1GRJ A;  4DRI A;  1HJX A;  4DWS D;  2DSV A;  4URI A;  2WSC G;  2RUC A;  4E44 B;  4HAR A;  4W9O A;  4W5U A;  4IPX A;  4LAX A;  5HWC A;  1X6N A;  4P8X A;  2XP9 A;  4DH0 A;  5HBF A;  2F23 A;  1N3S A;  2WSF G;  2D9F A;  1D7H A;  2A3A A;  1IX5 A;  1W9U A;  1FJD A;  5HWB A;  1W26 A;  1TCO C;  1RD6 A;  2AOS A;  3NRK A;  1QZ2 A; 
#chains in the Genus database with same CATH homology
 1AIP C;  1N3T A;  2P11 A;  1GTP A;  3GTY X;  1GRJ A;  1EL6 A;  1IS7 A;  4QPM A;  1A8R A;  1TFE A;  1A9C A;  4Q7J A;  2LO0 A;  4JA3 A;  3VEJ A;  2KR1 A;  2LNZ A;  4E44 B;  5DMZ A;  1IS8 A;  4DRA E;  4NE6 B;  3GU0 A;  4DRB J;  2EUL A;  1WPL A;  2P4V A;  2PN0 A;  3B0B C;  2F23 A;  2ETN A;  1N3S A;  4E45 B;  1FBX A;  1WM9 A;  3BMB A;  1WUR A;  1WUQ A;  4NE5 B;  1N3R A;  4NE3 B;  1EFU B;  4R8Q A;  4DU6 A;  1FB1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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