2PN0A

Prokaryotic transcription elongation factor grea/greb from nitrosomonas europaea
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
124
structure length
123
Chain Sequence
KPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription
molecule keywords Prokaryotic transcription elongation factor GreA/GreB
publication title Crystal structure of prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea.
rcsb
source organism Nitrosomonas europaea
total genus 29
structure length 123
sequence length 124
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 2pn0A01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 2pn0A02
2PN0A 1TFEA 3BMBA 2ETNA 1EFUB 2EULA 1GRJA 1AIPC 4Q7JA 3GTYX 2F23A 2P4VA 3GU0A
chains in the Genus database with same CATH superfamily
3OOBA 4TYOA 4Z2LA 1FKSA 1GUVA 1ITXA 4QT2A 1N3RA 5HW8A 2G8ZA 4ODNA 2PBCA 1FAPA 1D7HA 1FBXA 4ZPTR 1R9HA 2F4EA 4HBOA 4URIA 4DU6A 3PA7A 1FFQA 3PRAA 2F2DA 2A3AA 1W1TA 1JNEA 3RMEA 3FXYA 2JZVA 1PBKA 2A3CA 4ODQA 4ODKA 4S3KA 1OGGA 3WQWA 2DT0A 4MNLA 4LAXA 4MGVA 3JYJA 4P8WA 4NZCA 1JVWA 2PPPA 2LO0A 1QPLA 1GTPA 1A7XA 3AS0A 2KGJA 1K9TA 1H0IA 1ZCNA 2LPVA 4JFJA 4JA3A 1ZL1A 4FAPA 3ALGA 3GTYX 5HWBA 4TW7A 2DT1A 3WD3A 1T11A 4WK9A 2WSFG 4MAVA 2WK2A 2MF9A 3UQAA 1YW5A 2KI3A 2DSUA 3KACA 1HKIA 1FKGA 4TX0A 1X6NA 3UQIA 4W5UA 4FN2A 1F40A 2F21A 2PN0A 1YATA 3WQVA 1E44A 3RGCA 1NH6A 1E9LA 3PRDA 3FY1A 2Q5AA 1C9HA 3O5OA 4NE6B 2RURA 2VCDA 1WB0A 2YBTA 5B8IC 2PV1A 1ZBCA 2ZQTA 1Y0OA 1EFUB 3ARTA 2WSFK 4DWSA 3CHEA 3KAIA 2KO7A 4C02B 5HW7A 5GPRA 4R8QA 1VF8A 1LG1A 3KADA 2DG3A 3B9AA 1IS8A 4L72B 1XRVA 1UR8A 1B6CA 5HT1A 4IQCA 3AS1A 2DG4A 3W4RA 1LJYA 3LUOA 4ZPWR 1FD9A 3ARSA 5GPGA 5HWCA 4N19A 3PR9A 1CTNA 3O5DA 1AIPC 1L1PA 4MNKA 2K8IA 1HKJA 4MNMA 4S3JA 1W9UA 5J6EA 4O2TA 1ZU8A 1D2KA 1NWSA 4Z2GA 2XPBA 1E6PA 2VN1A 4L3NA 4Z2KA 4ZPVR 4DRPA 2KR7A 3NTPA 3UQBA 3O5JA 3UI6A 2ZQUA 4R5EA 1JNTA 2F23A 1D7IA 2L2SA 2QF8A 1GPFA 4U84A 4ODLA 1FKLA 3O5IA 3PRBA 3O5QA 3O5FA 1FKRA 2G41A 4QIBA 3TC5A 1EDQA 2WSCK 1BL4A 4U85A 1W1PA 4QT3A 1FKBA 1JNDA 2XP5A 2MLZA 3UI4A 3GU0A 3I6CA 4DWSC 1X6LA 2XPAA 1W1VA 4E44B 1XHGA 1NWRA 2XP8A 3LW5K 2FDMA 4WKAA 4MSPA 4NSBA 3ODKA 3CH9A 5HTGA 1NWTA 2O9OA 1ZBWA 4JYSA 3KAFA 5DMZA 1Q6UA 4TW8A 3AQUA 4JFKA 4JFIA 3ARXA 1H0GA 4G2PA 1OGBA 1A9CA 2KE0A 4Q7NA 1FKTA 3ARQA 3WH0A 1LG2A 3UI5A 2WSEK 3NRKA 1SYTA 3KCEA 2ZQVA 3B9EA 1Q6IA 1TFVA 1WM9A 1KFWA 3ARVA 2ZR4A 1WPLA 1ZBVA 1W1YA 3G6MA 1TCOC 4ODOA 4Z2HA 2PPOA 2PV3A 4KQZA 2DT3A 3CHFA 4QPMA 1OWQA 3ARPA 1FKFA 4DZ3A 1SR0A 1E6NA 1GOIA 1HKKA 4DT4A 4DWSD 1TFEA 4KR0B 3TDBA 1M5YA 1LQ0A 2DSZA 2LJ4A 2LKNA 4J4NA 1E15A 1JCHB 4DRAE 2LNZA 4NE5B 1WNOA 5GQBA 3O5RA 1E6RA 5HUAA 2RQSA 2D9FA 4BF8A 1FB1A 3WKZA 4IT4A 2M08A 4ODMA 1Q1CA 3AS3A 4PTMA 4XAKA 1NMVA 3ALFA 1FKHA 2PV2A 4DRBJ 1HKMA 5HBFA 1D6OA 1FKIA 4NNRA 2EULA 4AY1A 5HKGA 2IF4A 1A8RA 3CGMA 4MTVA 4E45B 2WM0A 5BXJA 3ARZA 3WIJA 1FKDA 4IQ2A 3IKGA 2XP3A 3EIPA 3WD1A 1J4RA 1N3TA 1ZB5A 1QPFA 4HBEA 2FAPA 4DRMA 2MLYA 2PI6A 2ETNA 1EL6A 2WSCG 4GGQA 1RD6A 3KABA 4P8VA 4J4OA 5DF0A 3RM9A 2MNTA 3O5PA 4DIPA 2IUZA 3LW5G 2ZQSA 2DT2A 2N87A 2KR1A 4LAWA 5HW6A 3WD4A 1Q6HA 4JFLA 3IKDA 3NI6A 4MPKA 5D75A 4DRIA 3VEJA 1KT0A 4JFMA 4P8UA 2XP6A 4P8XA 2RUQA 3IHZA 2ITKA 4IT6A 3KAHA 3BXWA 4Z2IA 3ARRA 2WSEG 2DG9A 1IX5A 4WKFA 3FAPA 1EYMA 1N1AA 2LGOA 2OLHA 1EQ3A 2MLXA 1HXVA 4DRKA 1HJVA 5DO2A 3RM4A 3H9RB 1E6ZA 1NSGA 1QZ2A 1NWUA 3ARWA 4WIWA 2P11A 1W9VA 3JYMA 3MDYB 4LGXA 4ODPA 2XP4A 4DH0A 1PINA 3CHDA 3O5EA 4U86A 1D7JA 3OA5A 4LAYA 1J4HA 1W9PA 1NMWA 1U79A 3WL0A 4Z2JA 2XP7A 4Q22A 4DROA 4NE3B 1IS7A 2Y78A 5JH8A 2YBUA 3QOKA 2DPEA 2MPHA 3CGNA 4WKHA 1F8AB 4UDMA 1LL6A 2AWGA 1LL7A 4TNSA 4DRQA 5DIUA 2B31A 3O5LA 1J4IA 1FFRA 3AROA 4W9OA 1P5QA 2RUCA 3WD2A 2ZR5A 4ML4A 5I98A 3B0BC 2B5UB 1J6YA 2O92A 3VAWA 5DEZA 3WD0A 4TW6A 1ZBKA 3EY6A 4QZVB 2OFNA 3RM8A 1GRJA 1ROTA 2DSWA 3B9DA 4DWSB 3ARYA 2FKEA 5DITA 4GIVA 4LAVA 1ROUA 4G50A 3CHCA 3KAGA 3GPKA 3B8SA 4ZS6A 2AOSA 2M2AA 4DZ2A 4W9PA 1N3SA 1EIBA 1W26A 2M1IA 3KZ7A 3TCZA 4Q7JA 4ODRA 1WUQA 4W9QA 3AS2A 2KFWA 1O6IA 3O5GA 2ESCA 4WJXA 1JNSA 2ZR6A 4MNJA 4HARA 2P4VA 4R0XA 2DSVA 1EHNA 3CZ8A 3WL1A 1HJWA 2A3EA 3RFWA 1ZK6A 4ITZA 3JXVA 5DIVA 2PPNA 1HJXA 3O5MA 2WLYA 1KT1A 2WLZA 4DRJA 1FJDA 4DRNA 3B7XA 2RSEA 2A3BA 4IPXA 3IK8A 1FKKA 1WAWA 4DRHA 1FKJA 2UZ5A 2O01G 3O5KA 1WURA 1BKFA 3ARUA 1LL4A 3G6LA 1UR9A 3BMBA 3UF8A 2RUDA 2XP9A
chains in the Genus database with same CATH topology
1WPLA 4E45B 1IS7A 2KR1A 4NE6B 2F23A 4DRAE 2LNZA 4NE5B 3B0BC 1N3SA 5DMZA 2P11A 1N3RA 1EFUB 1AIPC 1FB1A 2LO0A 4Q7JA 3VEJA 1WUQA 1N3TA 4QPMA 1A9CA 1GTPA 1FBXA 4R8QA 2ETNA 1EL6A 1GRJA 1IS8A 4JA3A 2P4VA 1WURA 3GU0A 4DRBJ 2PN0A 4DU6A 1TFEA 4E44B 3BMBA 2EULA 3GTYX 1WM9A 1A8RA 4NE3B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PN0 A;  1TFE A;  3BMB A;  2ETN A;  1EFU B;  2EUL A;  1GRJ A;  1AIP C;  4Q7J A;  3GTY X;  2F23 A;  2P4V A;  3GU0 A; 
#chains in the Genus database with same CATH topology
 3OOB A;  4TYO A;  4Z2L A;  1FKS A;  1GUV A;  1ITX A;  4QT2 A;  1N3R A;  5HW8 A;  2G8Z A;  4ODN A;  2PBC A;  1FAP A;  1D7H A;  1FBX A;  4ZPT R;  1R9H A;  2F4E A;  4HBO A;  4URI A;  4DU6 A;  3PA7 A;  1FFQ A;  3PRA A;  2F2D A;  2A3A A;  1W1T A;  1JNE A;  3RME A;  3FXY A;  2JZV A;  1PBK A;  2A3C A;  4ODQ A;  4ODK A;  4S3K A;  1OGG A;  3WQW A;  2DT0 A;  4MNL A;  4LAX A;  4MGV A;  3JYJ A;  4P8W A;  4NZC A;  1JVW A;  2PPP A;  2LO0 A;  1QPL A;  1GTP A;  1A7X A;  3AS0 A;  2KGJ A;  1K9T A;  1H0I A;  1ZCN A;  2LPV A;  4JFJ A;  4JA3 A;  1ZL1 A;  4FAP A;  3ALG A;  3GTY X;  5HWB A;  4TW7 A;  2DT1 A;  3WD3 A;  1T11 A;  4WK9 A;  2WSF G;  4MAV A;  2WK2 A;  2MF9 A;  3UQA A;  1YW5 A;  2KI3 A;  2DSU A;  3KAC A;  1HKI A;  1FKG A;  4TX0 A;  1X6N A;  3UQI A;  4W5U A;  4FN2 A;  1F40 A;  2F21 A;  2PN0 A;  1YAT A;  3WQV A;  1E44 A;  3RGC A;  1NH6 A;  1E9L A;  3PRD A;  3FY1 A;  2Q5A A;  1C9H A;  3O5O A;  4NE6 B;  2RUR A;  2VCD A;  1WB0 A;  2YBT A;  5B8I C;  2PV1 A;  1ZBC A;  2ZQT A;  1Y0O A;  1EFU B;  3ART A;  2WSF K;  4DWS A;  3CHE A;  3KAI A;  2KO7 A;  4C02 B;  5HW7 A;  5GPR A;  4R8Q A;  1VF8 A;  1LG1 A;  3KAD A;  2DG3 A;  3B9A A;  1IS8 A;  4L72 B;  1XRV A;  1UR8 A;  1B6C A;  5HT1 A;  4IQC A;  3AS1 A;  2DG4 A;  3W4R A;  1LJY A;  3LUO A;  4ZPW R;  1FD9 A;  3ARS A;  5GPG A;  5HWC A;  4N19 A;  3PR9 A;  1CTN A;  3O5D A;  1AIP C;  1L1P A;  4MNK A;  2K8I A;  1HKJ A;  4MNM A;  4S3J A;  1W9U A;  5J6E A;  4O2T A;  1ZU8 A;  1D2K A;  1NWS A;  4Z2G A;  2XPB A;  1E6P A;  2VN1 A;  4L3N A;  4Z2K A;  4ZPV R;  4DRP A;  2KR7 A;  3NTP A;  3UQB A;  3O5J A;  3UI6 A;  2ZQU A;  4R5E A;  1JNT A;  2F23 A;  1D7I A;  2L2S A;  2QF8 A;  1GPF A;  4U84 A;  4ODL A;  1FKL A;  3O5I A;  3PRB A;  3O5Q A;  3O5F A;  1FKR A;  2G41 A;  4QIB A;  3TC5 A;  1EDQ A;  2WSC K;  1BL4 A;  4U85 A;  1W1P A;  4QT3 A;  1FKB A;  1JND A;  2XP5 A;  2MLZ A;  3UI4 A;  3GU0 A;  3I6C A;  4DWS C;  1X6L A;  2XPA A;  1W1V A;  4E44 B;  1XHG A;  1NWR A;  2XP8 A;  3LW5 K;  2FDM A;  4WKA A;  4MSP A;  4NSB A;  3ODK A;  3CH9 A;  5HTG A;  1NWT A;  2O9O A;  1ZBW A;  4JYS A;  3KAF A;  5DMZ A;  1Q6U A;  4TW8 A;  3AQU A;  4JFK A;  4JFI A;  3ARX A;  1H0G A;  4G2P A;  1OGB A;  1A9C A;  2KE0 A;  4Q7N A;  1FKT A;  3ARQ A;  3WH0 A;  1LG2 A;  3UI5 A;  2WSE K;  3NRK A;  1SYT A;  3KCE A;  2ZQV A;  3B9E A;  1Q6I A;  1TFV A;  1WM9 A;  1KFW A;  3ARV A;  2ZR4 A;  1WPL A;  1ZBV A;  1W1Y A;  3G6M A;  1TCO C;  4ODO A;  4Z2H A;  2PPO A;  2PV3 A;  4KQZ A;  2DT3 A;  3CHF A;  4QPM A;  1OWQ A;  3ARP A;  1FKF A;  4DZ3 A;  1SR0 A;  1E6N A;  1GOI A;  1HKK A;  4DT4 A;  4DWS D;  1TFE A;  4KR0 B;  3TDB A;  1M5Y A;  1LQ0 A;  2DSZ A;  2LJ4 A;  2LKN A;  4J4N A;  1E15 A;  1JCH B;  4DRA E;  2LNZ A;  4NE5 B;  1WNO A;  5GQB A;  3O5R A;  1E6R A;  5HUA A;  2RQS A;  2D9F A;  4BF8 A;  1FB1 A;  3WKZ A;  4IT4 A;  2M08 A;  4ODM A;  1Q1C A;  3AS3 A;  4PTM A;  4XAK A;  1NMV A;  3ALF A;  1FKH A;  2PV2 A;  4DRB J;  1HKM A;  5HBF A;  1D6O A;  1FKI A;  4NNR A;  2EUL A;  4AY1 A;  5HKG A;  2IF4 A;  1A8R A;  3CGM A;  4MTV A;  4E45 B;  2WM0 A;  5BXJ A;  3ARZ A;  3WIJ A;  1FKD A;  4IQ2 A;  3IKG A;  2XP3 A;  3EIP A;  3WD1 A;  1J4R A;  1N3T A;  1ZB5 A;  1QPF A;  4HBE A;  2FAP A;  4DRM A;  2MLY A;  2PI6 A;  2ETN A;  1EL6 A;  2WSC G;  4GGQ A;  1RD6 A;  3KAB A;  4P8V A;  4J4O A;  5DF0 A;  3RM9 A;  2MNT A;  3O5P A;  4DIP A;  2IUZ A;  3LW5 G;  2ZQS A;  2DT2 A;  2N87 A;  2KR1 A;  4LAW A;  5HW6 A;  3WD4 A;  1Q6H A;  4JFL A;  3IKD A;  3NI6 A;  4MPK A;  5D75 A;  4DRI A;  3VEJ A;  1KT0 A;  4JFM A;  4P8U A;  2XP6 A;  4P8X A;  2RUQ A;  3IHZ A;  2ITK A;  4IT6 A;  3KAH A;  3BXW A;  4Z2I A;  3ARR A;  2WSE G;  2DG9 A;  1IX5 A;  4WKF A;  3FAP A;  1EYM A;  1N1A A;  2LGO A;  2OLH A;  1EQ3 A;  2MLX A;  1HXV A;  4DRK A;  1HJV A;  5DO2 A;  3RM4 A;  3H9R B;  1E6Z A;  1NSG A;  1QZ2 A;  1NWU A;  3ARW A;  4WIW A;  2P11 A;  1W9V A;  3JYM A;  3MDY B;  4LGX A;  4ODP A;  2XP4 A;  4DH0 A;  1PIN A;  3CHD A;  3O5E A;  4U86 A;  1D7J A;  3OA5 A;  4LAY A;  1J4H A;  1W9P A;  1NMW A;  1U79 A;  3WL0 A;  4Z2J A;  2XP7 A;  4Q22 A;  4DRO A;  4NE3 B;  1IS7 A;  2Y78 A;  5JH8 A;  2YBU A;  3QOK A;  2DPE A;  2MPH A;  3CGN A;  4WKH A;  1F8A B;  4UDM A;  1LL6 A;  2AWG A;  1LL7 A;  4TNS A;  4DRQ A;  5DIU A;  2B31 A;  3O5L A;  1J4I A;  1FFR A;  3ARO A;  4W9O A;  1P5Q A;  2RUC A;  3WD2 A;  2ZR5 A;  4ML4 A;  5I98 A;  3B0B C;  2B5U B;  1J6Y A;  2O92 A;  3VAW A;  5DEZ A;  3WD0 A;  4TW6 A;  1ZBK A;  3EY6 A;  4QZV B;  2OFN A;  3RM8 A;  1GRJ A;  1ROT A;  2DSW A;  3B9D A;  4DWS B;  3ARY A;  2FKE A;  5DIT A;  4GIV A;  4LAV A;  1ROU A;  4G50 A;  3CHC A;  3KAG A;  3GPK A;  3B8S A;  4ZS6 A;  2AOS A;  2M2A A;  4DZ2 A;  4W9P A;  1N3S A;  1EIB A;  1W26 A;  2M1I A;  3KZ7 A;  3TCZ A;  4Q7J A;  4ODR A;  1WUQ A;  4W9Q A;  3AS2 A;  2KFW A;  1O6I A;  3O5G A;  2ESC A;  4WJX A;  1JNS A;  2ZR6 A;  4MNJ A;  4HAR A;  2P4V A;  4R0X A;  2DSV A;  1EHN A;  3CZ8 A;  3WL1 A;  1HJW A;  2A3E A;  3RFW A;  1ZK6 A;  4ITZ A;  3JXV A;  5DIV A;  2PPN A;  1HJX A;  3O5M A;  2WLY A;  1KT1 A;  2WLZ A;  4DRJ A;  1FJD A;  4DRN A;  3B7X A;  2RSE A;  2A3B A;  4IPX A;  3IK8 A;  1FKK A;  1WAW A;  4DRH A;  1FKJ A;  2UZ5 A;  2O01 G;  3O5K A;  1WUR A;  1BKF A;  3ARU A;  1LL4 A;  3G6L A;  1UR9 A;  3BMB A;  3UF8 A;  2RUD A;  2XP9 A; 
#chains in the Genus database with same CATH homology
 1WPL A;  4E45 B;  1IS7 A;  2KR1 A;  4NE6 B;  2F23 A;  4DRA E;  2LNZ A;  4NE5 B;  3B0B C;  1N3S A;  5DMZ A;  2P11 A;  1N3R A;  1EFU B;  1AIP C;  1FB1 A;  2LO0 A;  4Q7J A;  3VEJ A;  1WUQ A;  1N3T A;  4QPM A;  1A9C A;  1GTP A;  1FBX A;  4R8Q A;  2ETN A;  1EL6 A;  1GRJ A;  1IS8 A;  4JA3 A;  2P4V A;  1WUR A;  3GU0 A;  4DRB J;  2PN0 A;  4DU6 A;  1TFE A;  4E44 B;  3BMB A;  2EUL A;  3GTY X;  1WM9 A;  1A8R A;  4NE3 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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