2PN0A

Prokaryotic transcription elongation factor grea/greb from nitrosomonas europaea
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
124
structure length
123
Chain Sequence
KPKIMISSLDAERLEILLETLSQNAFPGRDDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Prokaryotic transcription elongation factor GreA/GreB
publication title Crystal structure of prokaryotic transcription elongation factor GreA/GreB from Nitrosomonas europaea.
rcsb
source organism Nitrosomonas europaea
molecule tags Transcription
total genus 29
structure length 123
sequence length 124
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2007-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01272 GreA_GreB Transcription elongation factor, GreA/GreB, C-term
A PF14760 Rnk_N Rnk N-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.20 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 2pn0A01
3.10.50.30 Alpha Beta Roll Chitinase A; domain 3 Transcription elongation factor, GreA/GreB, C-terminal domain 2pn0A02
3GU0A 2F23A 1EFUB 2EULA 1AIPC 1GRJA 2PN0A 1TFEA 3GTYX 2ETNA 3BMBA 4Q7JA 2P4VA
chains in the Genus database with same CATH superfamily
1EIBA 1KT0A 1ZBVA 5HT1A 4C02B 3UI5A 1JCHB 1LL6A 5HBFA 2ZR6A 2ESCA 4ODNA 4NSBA 2PPNA 4O2TA 2OFNA 2N87A 3GTYX 2KR7A 4JFJA 2DSVA 1SYTA 1VF8A 4MAVA 1WAWA 4IQCA 3LW5K 1P5QA 1CTNA 1XRVA 4Z2KA 1J4HA 1HJXA 2PI6A 5HTGA 1T11A 2ZR4A 3RFWA 2MNTA 1N3TA 3O5RA 2DT1A 2XP8A 1OGBA 3MDYB 2DSWA 1HXVA 4DRBJ 3ALFA 4P8UA 2A3CA 2FAPA 2LPVA 1FFRA 4WIWA 3TCZA 2MLYA 1UR8A 1ZU8A 1E6PA 2LKNA 4U85A 1PBKA 1LJYA 4J4NA 1W26A 5GQBA 1ZB5A 2ZQUA 1OWQA 4W9PA 5HUAA 2G41A 2F21A 3I6CA 3H9RB 5BXJA 1LG1A 2G8ZA 5HWCA 4MTVA 1NMWA 2WLYA 1TFVA 4E44B 2WK2A 2LO0A 4WJXA 1UR9A 1WM9A 1FJDA 3G6MA 3UI4A 3W4RA 3G6LA 4Q7JA 1EQ3A 3ARSA 3IKDA 1KFWA 2KGJA 2QF8A 5HKGA 3ARQA 4IT4A 1JNDA 1PINA 1K9TA 4R8QA 1XHGA 4WKHA 3UQBA 1Q6IA 2RQSA 4JFIA 2MLZA 1EFUB 3NRKA 3OA5A 4MNKA 1JVWA 4MNLA 4R5EA 1H0IA 2K8IA 4IPXA 2RUQA 3WH0A 1W1PA 1RD6A 1N3SA 3WD3A 3QOKA 4KQZA 3WIJA 2EULA 4ODMA 4TX0A 5DO2A 4DT4A 4NZCA 2RURA 3B8SA 4MPKA 4DRMA 3CHEA 3AS3A 4LAXA 4L72B 1BKFA 1W1VA 3LUOA 4ODPA 1HKIA 2XP5A 3O5GA 5DMZA 1YW5A 1OGGA 4HARA 2MLXA 1SR0A 1FFQA 3O5KA 1D7JA 1FKRA 1QZ2A 4DRJA 2VN1A 2ZQSA 3ARZA 5DIUA 1QPLA 3O5OA 1F8AB 1J6YA 4DRHA 1HJWA 4JFLA 4DRQA 3B7XA 1M5YA 3CHDA 1HJVA 3CHFA 4HBOA 2LNZA 4P8WA 1O6IA 4NE5B 4R0XA 5I98A 1IS7A 2OLHA 5HW6A 1GPFA 4LAYA 2Y78A 4ZPVR 2XP6A 1NWRA 3BXWA 4DWSD 3AS1A 1C9HA 2P4VA 4LGXA 1IS8A 4ODLA 4ZPWR 2RSEA 1QPFA 4QZVB 4QT2A 2ZR5A 3WL1A 4DRIA 3AQUA 1NH6A 3KAFA 2KI3A 3ARVA 1A9CA 2DPEA 2PBCA 2RUDA 2AOSA 1LL4A 3PRBA 4WK9A 1ZBCA 2DSZA 5DF0A 1EHNA 2PV2A 4DRPA 4QIBA 1E6RA 1FKSA 4ODQA 4QT3A 2L2SA 1FAPA 3NTPA 3UQAA 3KABA 3O5EA 1FKHA 4MGVA 1EYMA 2M08A 2YBUA 4FN2A 3CHCA 3EIPA 5HW8A 1JNTA 4Z2GA 1LQ0A 4DZ3A 3PRAA 4DWSA 1W1YA 4TW8A 3KACA 3TC5A 1E6ZA 5DITA 1NWUA 2ITKA 1HKMA 2DT2A 4XAKA 1FKDA 4TW7A 3RGCA 4W9QA 1WNOA 2A3AA 4N19A 1FKFA 1WUQA 2A3BA 3RM4A 1Q6HA 1E9LA 1J4IA 5B8IC 1NWTA 4NE6B 4ZPTR 1W9UA 3O5IA 1FKTA 1E44A 4DIPA 3B9EA 2KE0A 1U79A 3RM9A 1Q6UA 2KFWA 3VAWA 2DG3A 2IUZA 3O5DA 2XP3A 2XP9A 2WM0A 2XPBA 1ROUA 3AS2A 3KZ7A 3FXYA 2O01G 3GU0A 1ROTA 1FB1A 4FAPA 1FKJA 2Q5AA 3UF8A 1JNSA 1Y0OA 2DG9A 1D7IA 4LAWA 3VEJA 4QPMA 2DT0A 4Z2HA 1W9PA 4Q7NA 2D9FA 1TCOC 3TDBA 4U86A 3JYJA 3ARPA 4W9OA 3PA7A 1BL4A 4E45B 3NI6A 5DIVA 1GRJA 1TFEA 4BF8A 2PPOA 4P8XA 3CZ8A 1WPLA 1F40A 4DWSC 1ZL1A 1X6LA 5J6EA 4AY1A 5HWBA 4HBEA 4DWSB 2XPAA 3CGNA 3WQVA 2WSEG 2WLZA 2XP7A 4IQ2A 4WKFA 1JNEA 4W5UA 2UZ5A 1NMVA 3B9DA 3CGMA 4ML4A 4L3NA 1AIPC 2MPHA 3AS0A 2B5UB 4G50A 2ZQVA 2PV1A 5DEZA 2FDMA 2LGOA 4ZS6A 3ARTA 3KAIA 3UQIA 4KR0B 1D2KA 3ARYA 4WKAA 4PTMA 1L1PA 3PRDA 4JFMA 3IKGA 1GTPA 4ITZA 2F2DA 2VCDA 3O5QA 4TYOA 2DSUA 4DROA 2WSEK 1YATA 2PPPA 1ZCNA 1LL7A 4S3JA 3OOBA 2WSFG 2P11A 3KAGA 2DG4A 3ARUA 3ARWA 3KAHA 4JYSA 3WD1A 3ODKA 4DRNA 1J4RA 1WURA 1NSGA 3EY6A 2F4EA 4NE3B 2DT3A 4IT6A 1HKKA 2KO7A 1ITXA 4Z2LA 2PV3A 2A3EA 2XP4A 3O5FA 1GOIA 4ODKA 3IHZA 3UI6A 4Z2JA 4URIA 4J4OA 4JA3A 2FKEA 3WKZA 1FKIA 1FBXA 1D6OA 1ZBKA 1ZK6A 4S3KA 2WSFK 3RMEA 3WL0A 4MNMA 2B31A 1Q1CA 3FAPA 2M2AA 4G2PA 2AWGA 3WD2A 3B9AA 4GGQA 4Q22A 3KCEA 3AROA 3CH9A 2WSCG 2ZQTA 3ARRA 1W1TA 4TW6A 1FKKA 2PN0A 3WQWA 1N3RA 4GIVA 2LJ4A 3WD4A 4Z2IA 1ZBWA 2F23A 1A7XA 5GPGA 3ALGA 3RM8A 2O92A 4P8VA 4JFKA 3O5LA 1FKBA 3O5PA 4LAVA 1FD9A 1EL6A 3O5MA 3O5JA 1KT1A 4MSPA 3FY1A 3KADA 2YBTA 5JH8A 1R9HA 1X6NA 4DRKA 4DZ2A 2O9OA 1GUVA 2WSCK 3IK8A 1LG2A 4TNSA 4U84A 1B6CA 1E15A 1FKGA 5HW7A 4ODOA 5GPRA 3JXVA 3ARXA 4ODRA 2IF4A 1HKJA 1E6NA 5D75A 1D7HA 2ETNA 1NWSA 2RUCA 1FKLA 1EDQA 4DRAE 1W9VA 1WB0A 1A8RA 2KR1A 3WD0A 4NNRA 1IX5A 2MF9A 4UDMA 1H0GA 3JYMA 1N1AA 4MNJA 4DH0A 3BMBA 3LW5G 4DU6A 3GPKA 3PR9A 2M1IA 3B0BC 2JZVA
chains in the Genus database with same CATH topology
2F23A 1N3SA 4JA3A 2EULA 1AIPC 1FBXA 2P11A 2ETNA 2P4VA 4E45B 4DRAE 1IS8A 1N3TA 1GRJA 1TFEA 1WURA 1WPLA 4R8QA 1EL6A 2KR1A 1A8RA 1WUQA 3GU0A 1EFUB 3GTYX 4NE3B 1FB1A 4DRBJ 4E44B 2LNZA 2LO0A 3BMBA 1GTPA 4NE6B 1A9CA 4NE5B 4DU6A 1WM9A 5DMZA 3VEJA 2PN0A 4QPMA 1IS7A 1N3RA 3B0BC 4Q7JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GU0 A;  2F23 A;  1EFU B;  2EUL A;  1AIP C;  1GRJ A;  2PN0 A;  1TFE A;  3GTY X;  2ETN A;  3BMB A;  4Q7J A;  2P4V A; 
#chains in the Genus database with same CATH topology
 1EIB A;  1KT0 A;  1ZBV A;  5HT1 A;  4C02 B;  3UI5 A;  1JCH B;  1LL6 A;  5HBF A;  2ZR6 A;  2ESC A;  4ODN A;  4NSB A;  2PPN A;  4O2T A;  2OFN A;  2N87 A;  3GTY X;  2KR7 A;  4JFJ A;  2DSV A;  1SYT A;  1VF8 A;  4MAV A;  1WAW A;  4IQC A;  3LW5 K;  1P5Q A;  1CTN A;  1XRV A;  4Z2K A;  1J4H A;  1HJX A;  2PI6 A;  5HTG A;  1T11 A;  2ZR4 A;  3RFW A;  2MNT A;  1N3T A;  3O5R A;  2DT1 A;  2XP8 A;  1OGB A;  3MDY B;  2DSW A;  1HXV A;  4DRB J;  3ALF A;  4P8U A;  2A3C A;  2FAP A;  2LPV A;  1FFR A;  4WIW A;  3TCZ A;  2MLY A;  1UR8 A;  1ZU8 A;  1E6P A;  2LKN A;  4U85 A;  1PBK A;  1LJY A;  4J4N A;  1W26 A;  5GQB A;  1ZB5 A;  2ZQU A;  1OWQ A;  4W9P A;  5HUA A;  2G41 A;  2F21 A;  3I6C A;  3H9R B;  5BXJ A;  1LG1 A;  2G8Z A;  5HWC A;  4MTV A;  1NMW A;  2WLY A;  1TFV A;  4E44 B;  2WK2 A;  2LO0 A;  4WJX A;  1UR9 A;  1WM9 A;  1FJD A;  3G6M A;  3UI4 A;  3W4R A;  3G6L A;  4Q7J A;  1EQ3 A;  3ARS A;  3IKD A;  1KFW A;  2KGJ A;  2QF8 A;  5HKG A;  3ARQ A;  4IT4 A;  1JND A;  1PIN A;  1K9T A;  4R8Q A;  1XHG A;  4WKH A;  3UQB A;  1Q6I A;  2RQS A;  4JFI A;  2MLZ A;  1EFU B;  3NRK A;  3OA5 A;  4MNK A;  1JVW A;  4MNL A;  4R5E A;  1H0I A;  2K8I A;  4IPX A;  2RUQ A;  3WH0 A;  1W1P A;  1RD6 A;  1N3S A;  3WD3 A;  3QOK A;  4KQZ A;  3WIJ A;  2EUL A;  4ODM A;  4TX0 A;  5DO2 A;  4DT4 A;  4NZC A;  2RUR A;  3B8S A;  4MPK A;  4DRM A;  3CHE A;  3AS3 A;  4LAX A;  4L72 B;  1BKF A;  1W1V A;  3LUO A;  4ODP A;  1HKI A;  2XP5 A;  3O5G A;  5DMZ A;  1YW5 A;  1OGG A;  4HAR A;  2MLX A;  1SR0 A;  1FFQ A;  3O5K A;  1D7J A;  1FKR A;  1QZ2 A;  4DRJ A;  2VN1 A;  2ZQS A;  3ARZ A;  5DIU A;  1QPL A;  3O5O A;  1F8A B;  1J6Y A;  4DRH A;  1HJW A;  4JFL A;  4DRQ A;  3B7X A;  1M5Y A;  3CHD A;  1HJV A;  3CHF A;  4HBO A;  2LNZ A;  4P8W A;  1O6I A;  4NE5 B;  4R0X A;  5I98 A;  1IS7 A;  2OLH A;  5HW6 A;  1GPF A;  4LAY A;  2Y78 A;  4ZPV R;  2XP6 A;  1NWR A;  3BXW A;  4DWS D;  3AS1 A;  1C9H A;  2P4V A;  4LGX A;  1IS8 A;  4ODL A;  4ZPW R;  2RSE A;  1QPF A;  4QZV B;  4QT2 A;  2ZR5 A;  3WL1 A;  4DRI A;  3AQU A;  1NH6 A;  3KAF A;  2KI3 A;  3ARV A;  1A9C A;  2DPE A;  2PBC A;  2RUD A;  2AOS A;  1LL4 A;  3PRB A;  4WK9 A;  1ZBC A;  2DSZ A;  5DF0 A;  1EHN A;  2PV2 A;  4DRP A;  4QIB A;  1E6R A;  1FKS A;  4ODQ A;  4QT3 A;  2L2S A;  1FAP A;  3NTP A;  3UQA A;  3KAB A;  3O5E A;  1FKH A;  4MGV A;  1EYM A;  2M08 A;  2YBU A;  4FN2 A;  3CHC A;  3EIP A;  5HW8 A;  1JNT A;  4Z2G A;  1LQ0 A;  4DZ3 A;  3PRA A;  4DWS A;  1W1Y A;  4TW8 A;  3KAC A;  3TC5 A;  1E6Z A;  5DIT A;  1NWU A;  2ITK A;  1HKM A;  2DT2 A;  4XAK A;  1FKD A;  4TW7 A;  3RGC A;  4W9Q A;  1WNO A;  2A3A A;  4N19 A;  1FKF A;  1WUQ A;  2A3B A;  3RM4 A;  1Q6H A;  1E9L A;  1J4I A;  5B8I C;  1NWT A;  4NE6 B;  4ZPT R;  1W9U A;  3O5I A;  1FKT A;  1E44 A;  4DIP A;  3B9E A;  2KE0 A;  1U79 A;  3RM9 A;  1Q6U A;  2KFW A;  3VAW A;  2DG3 A;  2IUZ A;  3O5D A;  2XP3 A;  2XP9 A;  2WM0 A;  2XPB A;  1ROU A;  3AS2 A;  3KZ7 A;  3FXY A;  2O01 G;  3GU0 A;  1ROT A;  1FB1 A;  4FAP A;  1FKJ A;  2Q5A A;  3UF8 A;  1JNS A;  1Y0O A;  2DG9 A;  1D7I A;  4LAW A;  3VEJ A;  4QPM A;  2DT0 A;  4Z2H A;  1W9P A;  4Q7N A;  2D9F A;  1TCO C;  3TDB A;  4U86 A;  3JYJ A;  3ARP A;  4W9O A;  3PA7 A;  1BL4 A;  4E45 B;  3NI6 A;  5DIV A;  1GRJ A;  1TFE A;  4BF8 A;  2PPO A;  4P8X A;  3CZ8 A;  1WPL A;  1F40 A;  4DWS C;  1ZL1 A;  1X6L A;  5J6E A;  4AY1 A;  5HWB A;  4HBE A;  4DWS B;  2XPA A;  3CGN A;  3WQV A;  2WSE G;  2WLZ A;  2XP7 A;  4IQ2 A;  4WKF A;  1JNE A;  4W5U A;  2UZ5 A;  1NMV A;  3B9D A;  3CGM A;  4ML4 A;  4L3N A;  1AIP C;  2MPH A;  3AS0 A;  2B5U B;  4G50 A;  2ZQV A;  2PV1 A;  5DEZ A;  2FDM A;  2LGO A;  4ZS6 A;  3ART A;  3KAI A;  3UQI A;  4KR0 B;  1D2K A;  3ARY A;  4WKA A;  4PTM A;  1L1P A;  3PRD A;  4JFM A;  3IKG A;  1GTP A;  4ITZ A;  2F2D A;  2VCD A;  3O5Q A;  4TYO A;  2DSU A;  4DRO A;  2WSE K;  1YAT A;  2PPP A;  1ZCN A;  1LL7 A;  4S3J A;  3OOB A;  2WSF G;  2P11 A;  3KAG A;  2DG4 A;  3ARU A;  3ARW A;  3KAH A;  4JYS A;  3WD1 A;  3ODK A;  4DRN A;  1J4R A;  1WUR A;  1NSG A;  3EY6 A;  2F4E A;  4NE3 B;  2DT3 A;  4IT6 A;  1HKK A;  2KO7 A;  1ITX A;  4Z2L A;  2PV3 A;  2A3E A;  2XP4 A;  3O5F A;  1GOI A;  4ODK A;  3IHZ A;  3UI6 A;  4Z2J A;  4URI A;  4J4O A;  4JA3 A;  2FKE A;  3WKZ A;  1FKI A;  1FBX A;  1D6O A;  1ZBK A;  1ZK6 A;  4S3K A;  2WSF K;  3RME A;  3WL0 A;  4MNM A;  2B31 A;  1Q1C A;  3FAP A;  2M2A A;  4G2P A;  2AWG A;  3WD2 A;  3B9A A;  4GGQ A;  4Q22 A;  3KCE A;  3ARO A;  3CH9 A;  2WSC G;  2ZQT A;  3ARR A;  1W1T A;  4TW6 A;  1FKK A;  2PN0 A;  3WQW A;  1N3R A;  4GIV A;  2LJ4 A;  3WD4 A;  4Z2I A;  1ZBW A;  2F23 A;  1A7X A;  5GPG A;  3ALG A;  3RM8 A;  2O92 A;  4P8V A;  4JFK A;  3O5L A;  1FKB A;  3O5P A;  4LAV A;  1FD9 A;  1EL6 A;  3O5M A;  3O5J A;  1KT1 A;  4MSP A;  3FY1 A;  3KAD A;  2YBT A;  5JH8 A;  1R9H A;  1X6N A;  4DRK A;  4DZ2 A;  2O9O A;  1GUV A;  2WSC K;  3IK8 A;  1LG2 A;  4TNS A;  4U84 A;  1B6C A;  1E15 A;  1FKG A;  5HW7 A;  4ODO A;  5GPR A;  3JXV A;  3ARX A;  4ODR A;  2IF4 A;  1HKJ A;  1E6N A;  5D75 A;  1D7H A;  2ETN A;  1NWS A;  2RUC A;  1FKL A;  1EDQ A;  4DRA E;  1W9V A;  1WB0 A;  1A8R A;  2KR1 A;  3WD0 A;  4NNR A;  1IX5 A;  2MF9 A;  4UDM A;  1H0G A;  3JYM A;  1N1A A;  4MNJ A;  4DH0 A;  3BMB A;  3LW5 G;  4DU6 A;  3GPK A;  3PR9 A;  2M1I A;  3B0B C;  2JZV A; 
#chains in the Genus database with same CATH homology
 2F23 A;  1N3S A;  4JA3 A;  2EUL A;  1AIP C;  1FBX A;  2P11 A;  2ETN A;  2P4V A;  4E45 B;  4DRA E;  1IS8 A;  1N3T A;  1GRJ A;  1TFE A;  1WUR A;  1WPL A;  4R8Q A;  1EL6 A;  2KR1 A;  1A8R A;  1WUQ A;  3GU0 A;  1EFU B;  3GTY X;  4NE3 B;  1FB1 A;  4DRB J;  4E44 B;  2LNZ A;  2LO0 A;  3BMB A;  1GTP A;  4NE6 B;  1A9C A;  4NE5 B;  4DU6 A;  1WM9 A;  5DMZ A;  3VEJ A;  2PN0 A;  4QPM A;  1IS7 A;  1N3R A;  3B0B C;  4Q7J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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