2O01 | Genus

Total Genus 8

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	8
sequence length	95
structure length	95
Chain Sequence	PSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 95 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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95 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	The structure of a plant photosystem I supercomplex at 3.4 A resolution. pubmed doi rcsb
molecule keywords	Photosystem I P700 chlorophyll a apoprotein A1
molecule tags	Photosynthesis
total genus	8
structure length	95
sequence length	95
ec nomenclature
pdb deposition date	2006-11-27

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	Chlorophyll a-b binding protein like	2o01G01

2WSFG 3LW5G 2O01G 2WSCG 2WSEG 2WSFK 3LW5K 2WSCK 2WSEK
chains in the Genus database with same CATH superfamily

1FBXA 1WURA 4DRAE 2KR1A 4NE5B 1N3TA 1WUQA 2WSEG 4QPMA 1N3SA 4DRBJ 3VEJA 1A9CA 1WPLA 3LW5G 1WM9A 2WSCG 1IS8A 1AIPC 4DU6A 2WSEK 2P11A 2LNZA 1GTPA 2PN0A 4R8QA 4NE6B 2WSFG 4Q7JA 2O01G 1EL6A 4E45B 1EFUB 1IS7A 3LW5K 4NE3B 2WSCK 4E44B 1A8RA 4JA3A 1FB1A 3B0BC 1TFEA 5DMZA 3BMBA 1N3RA 2WSFK 2LO0A
chains in the Genus database with same CATH topology

2WSFG 3LW5G 2O01G 2WSCG 2WSEG 2WSFK 3LW5K 2WSCK 2WSEK
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2WSF G;  3LW5 G;  2O01 G;  2WSC G;  2WSE G;  2WSF K;  3LW5 K;  2WSC K;  2WSE K; 
#chains in the Genus database with same CATH topology
 1FBX A;  1WUR A;  4DRA E;  2KR1 A;  4NE5 B;  1N3T A;  1WUQ A;  2WSE G;  4QPM A;  1N3S A;  4DRB J;  3VEJ A;  1A9C A;  1WPL A;  3LW5 G;  1WM9 A;  2WSC G;  1IS8 A;  1AIP C;  4DU6 A;  2WSE K;  2P11 A;  2LNZ A;  1GTP A;  2PN0 A;  4R8Q A;  4NE6 B;  2WSF G;  4Q7J A;  2O01 G;  1EL6 A;  4E45 B;  1EFU B;  1IS7 A;  3LW5 K;  4NE3 B;  2WSC K;  4E44 B;  1A8R A;  4JA3 A;  1FB1 A;  3B0B C;  1TFE A;  5DMZ A;  3BMB A;  1N3R A;  2WSF K;  2LO0 A; 
#chains in the Genus database with same CATH homology
 2WSF G;  3LW5 G;  2O01 G;  2WSC G;  2WSE G;  2WSF K;  3LW5 K;  2WSC K;  2WSE K;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2O01G

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN