2WSC | Genus

Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	11
sequence length	84
structure length	84
Chain Sequence	DYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGIQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

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Jmol JavaScript applet jmolApplet0__5701172903104146__ initializing

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfdd0fd3af69c25ea16b018/pdb.gz): 388 ms

reading 84 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

84 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Photosynthesis
publication title	Structure Determination and Improved Model of Plant Photosystem I. pubmed doi rcsb
molecule keywords	AT3G54890
total genus	11
structure length	84
sequence length	84
ec nomenclature
pdb deposition date	2009-09-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
K	PF01241	PSI_PSAK	Photosystem I psaG / psaK

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	Chlorophyll a-b binding protein like	2wscK00

3LW5K 3LW5G 2WSCK 2WSEK 2WSCG 2WSEG 2WSFG 2O01G 2WSFK
chains in the Genus database with same CATH superfamily

3LW5K 1EL6A 1EFUB 2P11A 1N3RA 4NE3B 2WSCG 4R8QA 1N3TA 1FB1A 1A8RA 1WM9A 3BMBA 3LW5G 4JA3A 4DRAE 2WSEK 4E45B 4QPMA 3VEJA 1FBXA 2PN0A 2WSFK 2LNZA 4DU6A 1A9CA 1WURA 4DRBJ 4NE5B 2WSEG 1IS7A 1GTPA 3B0BC 2WSFG 2O01G 2KR1A 1IS8A 4Q7JA 2LO0A 1WUQA 4NE6B 2WSCK 5DMZA 1AIPC 1TFEA 1N3SA 1WPLA 4E44B
chains in the Genus database with same CATH topology

3LW5K 3LW5G 2WSCK 2WSEK 2WSCG 2WSEG 2WSFG 2O01G 2WSFK
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3LW5 K;  3LW5 G;  2WSC K;  2WSE K;  2WSC G;  2WSE G;  2WSF G;  2O01 G;  2WSF K; 
#chains in the Genus database with same CATH topology
 3LW5 K;  1EL6 A;  1EFU B;  2P11 A;  1N3R A;  4NE3 B;  2WSC G;  4R8Q A;  1N3T A;  1FB1 A;  1A8R A;  1WM9 A;  3BMB A;  3LW5 G;  4JA3 A;  4DRA E;  2WSE K;  4E45 B;  4QPM A;  3VEJ A;  1FBX A;  2PN0 A;  2WSF K;  2LNZ A;  4DU6 A;  1A9C A;  1WUR A;  4DRB J;  4NE5 B;  2WSE G;  1IS7 A;  1GTP A;  3B0B C;  2WSF G;  2O01 G;  2KR1 A;  1IS8 A;  4Q7J A;  2LO0 A;  1WUQ A;  4NE6 B;  2WSC K;  5DMZ A;  1AIP C;  1TFE A;  1N3S A;  1WPL A;  4E44 B; 
#chains in the Genus database with same CATH homology
 3LW5 K;  3LW5 G;  2WSC K;  2WSE K;  2WSC G;  2WSE G;  2WSF G;  2O01 G;  2WSF K;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2WSCK

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations