2WSC | Genus

Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	11
sequence length	84
structure length	84
Chain Sequence	DYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGIQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Jmol JavaScript applet jmolApplet0__49174976173468__ initializing

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The Resolver thinks Pdb

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Time for openFile(/file/5cfdd0fd3af69c25ea16b018/pdb.gz): 559 ms

reading 84 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

84 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 17 ms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure Determination and Improved Model of Plant Photosystem I. pubmed doi rcsb
molecule keywords	AT3G54890
molecule tags	Photosynthesis
total genus	11
structure length	84
sequence length	84
ec nomenclature
pdb deposition date	2009-09-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
K	PF01241	PSI_PSAK	Photosystem I psaG / psaK

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	Chlorophyll a-b binding protein like	2wscK00

2WSEK 2WSEG 2WSCK 3LW5K 2WSFK 2WSCG 3LW5G 2O01G 2WSFG
chains in the Genus database with same CATH superfamily

4JA3A 2PN0A 1A9CA 1N3TA 2WSEG 1WUQA 1FBXA 4NE6B 2WSFK 3LW5G 1WM9A 1FB1A 1TFEA 1GTPA 2P11A 2LNZA 4Q7JA 3VEJA 2WSCK 2KR1A 1WURA 3BMBA 4NE3B 4DRAE 1N3SA 2LO0A 4QPMA 4DU6A 4DRBJ 1IS7A 2WSEK 4NE5B 4E45B 1N3RA 1A8RA 3LW5K 1EFUB 2WSFG 1IS8A 5DMZA 3B0BC 1AIPC 4R8QA 1EL6A 4E44B 1WPLA 2WSCG 2O01G
chains in the Genus database with same CATH topology

2WSEK 2WSEG 2WSCK 3LW5K 2WSFK 2WSCG 3LW5G 2O01G 2WSFG
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2WSE K;  2WSE G;  2WSC K;  3LW5 K;  2WSF K;  2WSC G;  3LW5 G;  2O01 G;  2WSF G; 
#chains in the Genus database with same CATH topology
 4JA3 A;  2PN0 A;  1A9C A;  1N3T A;  2WSE G;  1WUQ A;  1FBX A;  4NE6 B;  2WSF K;  3LW5 G;  1WM9 A;  1FB1 A;  1TFE A;  1GTP A;  2P11 A;  2LNZ A;  4Q7J A;  3VEJ A;  2WSC K;  2KR1 A;  1WUR A;  3BMB A;  4NE3 B;  4DRA E;  1N3S A;  2LO0 A;  4QPM A;  4DU6 A;  4DRB J;  1IS7 A;  2WSE K;  4NE5 B;  4E45 B;  1N3R A;  1A8R A;  3LW5 K;  1EFU B;  2WSF G;  1IS8 A;  5DMZ A;  3B0B C;  1AIP C;  4R8Q A;  1EL6 A;  4E44 B;  1WPL A;  2WSC G;  2O01 G; 
#chains in the Genus database with same CATH homology
 2WSE K;  2WSE G;  2WSC K;  3LW5 K;  2WSF K;  2WSC G;  3LW5 G;  2O01 G;  2WSF G;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2WSCK

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations