2WSE | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	95
structure length	95
Chain Sequence	PSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure determination and improved model of plant photosystem I pubmed doi rcsb
molecule keywords	AT3G54890
molecule tags	Photosynthesis
total genus	9
structure length	95
sequence length	95
ec nomenclature
pdb deposition date	2009-09-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
G	PF01241	PSI_PSAK	Photosystem I psaG / psaK

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	Chlorophyll a-b binding protein like	2wseG00

2WSCG 2WSEG 2WSFK 3LW5G 2WSCK 2O01G 2WSFG 3LW5K 2WSEK
chains in the Genus database with same CATH superfamily

2P11A 1EFUB 1N3RA 1N3SA 5DMZA 1N3TA 1WPLA 2O01G 1IS8A 4NE3B 4NE5B 2WSFG 4R8QA 1TFEA 1EL6A 2WSCG 4DU6A 2WSFK 2WSCK 4Q7JA 1IS7A 2LO0A 2KR1A 3B0BC 3VEJA 4QPMA 1A8RA 1A9CA 4DRBJ 4E44B 4E45B 1AIPC 1WURA 1FBXA 1FB1A 2WSEG 3LW5G 4DRAE 4NE6B 1WM9A 2LNZA 3LW5K 2WSEK 2PN0A 4JA3A 3BMBA 1GTPA 1WUQA
chains in the Genus database with same CATH topology

2WSCG 2WSEG 2WSFK 3LW5G 2WSCK 2O01G 2WSFG 3LW5K 2WSEK
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2WSC G;  2WSE G;  2WSF K;  3LW5 G;  2WSC K;  2O01 G;  2WSF G;  3LW5 K;  2WSE K; 
#chains in the Genus database with same CATH topology
 2P11 A;  1EFU B;  1N3R A;  1N3S A;  5DMZ A;  1N3T A;  1WPL A;  2O01 G;  1IS8 A;  4NE3 B;  4NE5 B;  2WSF G;  4R8Q A;  1TFE A;  1EL6 A;  2WSC G;  4DU6 A;  2WSF K;  2WSC K;  4Q7J A;  1IS7 A;  2LO0 A;  2KR1 A;  3B0B C;  3VEJ A;  4QPM A;  1A8R A;  1A9C A;  4DRB J;  4E44 B;  4E45 B;  1AIP C;  1WUR A;  1FBX A;  1FB1 A;  2WSE G;  3LW5 G;  4DRA E;  4NE6 B;  1WM9 A;  2LNZ A;  3LW5 K;  2WSE K;  2PN0 A;  4JA3 A;  3BMB A;  1GTP A;  1WUQ A; 
#chains in the Genus database with same CATH homology
 2WSC G;  2WSE G;  2WSF K;  3LW5 G;  2WSC K;  2O01 G;  2WSF G;  3LW5 K;  2WSE K;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2WSEG

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations