2WSE | Genus

Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	84
structure length	84
Chain Sequence	DYIGSSTNLIMVTTTTLMLFAGRFGLAPSANRKATAGLKLEARESGIQTGDPAGFTLADTLACGAVGHIMGVGIVLGLKNTGVL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Photosynthesis
publication title	Structure determination and improved model of plant photosystem I pubmed doi rcsb
molecule keywords	AT3G54890
total genus	15
structure length	84
sequence length	84
ec nomenclature
pdb deposition date	2009-09-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
K	PF01241	PSI_PSAK	Photosystem I psaG / psaK

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	Chlorophyll a-b binding protein like	2wseK00

2O01G 2WSEK 2WSCG 2WSFG 3LW5K 2WSEG 2WSCK 2WSFK 3LW5G
chains in the Genus database with same CATH superfamily

4E44B 5DMZA 2WSEK 2LO0A 2WSEG 2WSCK 2LNZA 3B0BC 1EFUB 1FB1A 2WSCG 1A8RA 1WPLA 4NE6B 4NE5B 4DU6A 4E45B 1N3TA 2WSFK 4QPMA 1EL6A 2O01G 2PN0A 4JA3A 4Q7JA 2WSFG 1IS8A 3LW5K 1AIPC 1TFEA 4DRBJ 3VEJA 1N3RA 1A9CA 3BMBA 3LW5G 1WUQA 1WM9A 1WURA 2P11A 4DRAE 1FBXA 1GTPA 2KR1A 4R8QA 4NE3B 1IS7A 1N3SA
chains in the Genus database with same CATH topology

2O01G 2WSEK 2WSCG 2WSFG 3LW5K 2WSEG 2WSCK 2WSFK 3LW5G
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2O01 G;  2WSE K;  2WSC G;  2WSF G;  3LW5 K;  2WSE G;  2WSC K;  2WSF K;  3LW5 G; 
#chains in the Genus database with same CATH topology
 4E44 B;  5DMZ A;  2WSE K;  2LO0 A;  2WSE G;  2WSC K;  2LNZ A;  3B0B C;  1EFU B;  1FB1 A;  2WSC G;  1A8R A;  1WPL A;  4NE6 B;  4NE5 B;  4DU6 A;  4E45 B;  1N3T A;  2WSF K;  4QPM A;  1EL6 A;  2O01 G;  2PN0 A;  4JA3 A;  4Q7J A;  2WSF G;  1IS8 A;  3LW5 K;  1AIP C;  1TFE A;  4DRB J;  3VEJ A;  1N3R A;  1A9C A;  3BMB A;  3LW5 G;  1WUQ A;  1WM9 A;  1WUR A;  2P11 A;  4DRA E;  1FBX A;  1GTP A;  2KR1 A;  4R8Q A;  4NE3 B;  1IS7 A;  1N3S A; 
#chains in the Genus database with same CATH homology
 2O01 G;  2WSE K;  2WSC G;  2WSF G;  3LW5 K;  2WSE G;  2WSC K;  2WSF K;  3LW5 G;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2WSEK

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations