2WSFG

Improved model of plant photosystem i
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
95
structure length
95
Chain Sequence
PSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure determination and improved model of plant photosystem I.
pubmed doi rcsb
molecule tags Photosynthesis
molecule keywords AT3G54890
total genus 10
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2009-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF01241 PSI_PSAK Photosystem I psaG / psaK
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.40 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 Chlorophyll a-b binding protein like 2wsfG00
3LW5G 2WSCG 2WSFG 2WSCK 2WSFK 2WSEK 2O01G 2WSEG 3LW5K
chains in the Genus database with same CATH superfamily
1N3TA 1WPLA 1IS8A 4DRAE 2LNZA 1A8RA 4DU6A 4NE6B 1A9CA 4QPMA 2P11A 1FBXA 1IS7A 4NE3B 4E45B 3LW5G 1GTPA 3LW5K 4DRBJ 4R8QA 3BMBA 2WSCG 1WM9A 2WSCK 4Q7JA 1AIPC 3VEJA 1FB1A 1WUQA 4E44B 2O01G 2PN0A 5DMZA 4JA3A 2LO0A 2WSFG 1TFEA 2WSFK 2KR1A 3B0BC 1N3RA 1EFUB 1N3SA 2WSEK 4NE5B 2WSEG 1EL6A 1WURA
chains in the Genus database with same CATH topology
3LW5G 2WSCG 2WSFG 2WSCK 2WSFK 2WSEK 2O01G 2WSEG 3LW5K
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LW5 G;  2WSC G;  2WSF G;  2WSC K;  2WSF K;  2WSE K;  2O01 G;  2WSE G;  3LW5 K; 
#chains in the Genus database with same CATH topology
 1N3T A;  1WPL A;  1IS8 A;  4DRA E;  2LNZ A;  1A8R A;  4DU6 A;  4NE6 B;  1A9C A;  4QPM A;  2P11 A;  1FBX A;  1IS7 A;  4NE3 B;  4E45 B;  3LW5 G;  1GTP A;  3LW5 K;  4DRB J;  4R8Q A;  3BMB A;  2WSC G;  1WM9 A;  2WSC K;  4Q7J A;  1AIP C;  3VEJ A;  1FB1 A;  1WUQ A;  4E44 B;  2O01 G;  2PN0 A;  5DMZ A;  4JA3 A;  2LO0 A;  2WSF G;  1TFE A;  2WSF K;  2KR1 A;  3B0B C;  1N3R A;  1EFU B;  1N3S A;  2WSE K;  4NE5 B;  2WSE G;  1EL6 A;  1WUR A; 
#chains in the Genus database with same CATH homology
 3LW5 G;  2WSC G;  2WSF G;  2WSC K;  2WSF K;  2WSE K;  2O01 G;  2WSE G;  3LW5 K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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