2XFDA

Vcbm60 in complex with cellobiose
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
109
structure length
109
Chain Sequence
NSITVRARGVNGQESVSLQVGGTTVQTWTLTTAMQDYTASTSLTGEIRVAFTNDATGRDVQVDYIVVNGQTRQAENQSVNTGVWANNQCGGSGNSEWLHCNGYISFGNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Circular Permutation Provides an Evolutionary Link between Two Families of Calcium-Dependent Carbohydrate Binding Modules.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords CARBOHYDRATE BINDING MODULE
total genus 23
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2010-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16841 CBM60 Ca-dependent carbohydrate-binding module xylan-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.60.40 Mainly Beta Sandwich Lipoxygenase-1 Lipoxygenase-1 2xfdA00
2XFEA 2XFDA 2XHHA 2XHJA
chains in the Genus database with same CATH superfamily
3BNCA 1CA1A 2XHHA 1IK3A 1F8NA 1GPLA 2XFDA 3CWZB 2KXTA 2PVSA 1OLPA 4WHAA 3VF1A 1W52X 2XHJA 2XFEA 2WY6A 3BNDA 2OXEA 2P0MA 2QZ7A 1LPBB 1FGOA 1GYGA 1NO3A 1QMDA 3U6GA 1HU9A 1YGEA 1HPLA 1KHOA 1LPAB 2WXUA 2IUJA 2LG7A 5EEOA 1RRLA 4QEYA 3PZWA 3FG3A 1RRHA 1FGRA 3V98A 3FG4A 1JNQA 3FG1A 1BU8A 2QNGA 3BNBA 3IBZA 3O8YA 2LGEA 2SBLA 4QWTA 1FGMA 2KXVA 2LRGA 1QM6A 1N8QA 1Y4KA 2PPLA 1N8SA 1LOXA 2WXTA 1ETHA 1FGQA 1LNHA 1FGTA 3V92A 3V99A 2FNQA 2IUKA 1ROVA 4WFOA 3BNEA 4NREA 1RP1A
chains in the Genus database with same CATH topology
2XFEA 4QEYA 3U6GA 2XHHA 2XHJA 2LRGA 2LGEA 2XFDA 2LG7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XFE A;  2XFD A;  2XHH A;  2XHJ A; 
#chains in the Genus database with same CATH topology
 3BNC A;  1CA1 A;  2XHH A;  1IK3 A;  1F8N A;  1GPL A;  2XFD A;  3CWZ B;  2KXT A;  2PVS A;  1OLP A;  4WHA A;  3VF1 A;  1W52 X;  2XHJ A;  2XFE A;  2WY6 A;  3BND A;  2OXE A;  2P0M A;  2QZ7 A;  1LPB B;  1FGO A;  1GYG A;  1NO3 A;  1QMD A;  3U6G A;  1HU9 A;  1YGE A;  1HPL A;  1KHO A;  1LPA B;  2WXU A;  2IUJ A;  2LG7 A;  5EEO A;  1RRL A;  4QEY A;  3PZW A;  3FG3 A;  1RRH A;  1FGR A;  3V98 A;  3FG4 A;  1JNQ A;  3FG1 A;  1BU8 A;  2QNG A;  3BNB A;  3IBZ A;  3O8Y A;  2LGE A;  2SBL A;  4QWT A;  1FGM A;  2KXV A;  2LRG A;  1QM6 A;  1N8Q A;  1Y4K A;  2PPL A;  1N8S A;  1LOX A;  2WXT A;  1ETH A;  1FGQ A;  1LNH A;  1FGT A;  3V92 A;  3V99 A;  2FNQ A;  2IUK A;  1ROV A;  4WFO A;  3BNE A;  4NRE A;  1RP1 A; 
#chains in the Genus database with same CATH homology
 2XFE A;  4QEY A;  3U6G A;  2XHH A;  2XHJ A;  2LRG A;  2LGE A;  2XFD A;  2LG7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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