3B0B | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	75
structure length	75
Chain Sequence	GGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQLLLDFV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 75 atoms

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75 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold. pubmed doi rcsb
molecule keywords	Centromere protein S
molecule tags	Dna binding protein
source organism	Gallus gallus
total genus	22
structure length	75
sequence length	75
chains with identical sequence	D
ec nomenclature
pdb deposition date	2011-06-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF09415	CENP-X	CENP-S associating Centromere protein X

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.100	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	GTP Cyclohydrolase I; Chain A, domain 1	3b0bC02

3B0BC 4DRBJ 4NE5B 4E44B 4E45B 4NE6B 4NE3B 4DRAE
chains in the Genus database with same CATH superfamily

4JA3A 2PN0A 1A9CA 1N3TA 2WSEG 1WUQA 1FBXA 4NE6B 2WSFK 3LW5G 1WM9A 1FB1A 1TFEA 1GTPA 2P11A 2LNZA 4Q7JA 3VEJA 2WSCK 2KR1A 1WURA 3BMBA 4NE3B 4DRAE 1N3SA 2LO0A 4QPMA 4DU6A 4DRBJ 1IS7A 2WSEK 4NE5B 4E45B 1N3RA 1A8RA 3LW5K 1EFUB 2WSFG 1IS8A 5DMZA 3B0BC 1AIPC 4R8QA 1EL6A 4E44B 1WPLA 2WSCG 2O01G
chains in the Genus database with same CATH topology

4JA3A 2PN0A 1A9CA 1N3TA 1WUQA 1FBXA 4NE6B 1WM9A 1FB1A 1TFEA 1GTPA 2P11A 2LNZA 4Q7JA 3VEJA 2KR1A 1WURA 3BMBA 4NE3B 4DRAE 1N3SA 2LO0A 4QPMA 4DU6A 4DRBJ 1IS7A 4NE5B 4E45B 1N3RA 1A8RA 1EFUB 5DMZA 1IS8A 3B0BC 1AIPC 4R8QA 1EL6A 4E44B 1WPLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3B0B C;  4DRB J;  4NE5 B;  4E44 B;  4E45 B;  4NE6 B;  4NE3 B;  4DRA E; 
#chains in the Genus database with same CATH topology
 4JA3 A;  2PN0 A;  1A9C A;  1N3T A;  2WSE G;  1WUQ A;  1FBX A;  4NE6 B;  2WSF K;  3LW5 G;  1WM9 A;  1FB1 A;  1TFE A;  1GTP A;  2P11 A;  2LNZ A;  4Q7J A;  3VEJ A;  2WSC K;  2KR1 A;  1WUR A;  3BMB A;  4NE3 B;  4DRA E;  1N3S A;  2LO0 A;  4QPM A;  4DU6 A;  4DRB J;  1IS7 A;  2WSE K;  4NE5 B;  4E45 B;  1N3R A;  1A8R A;  3LW5 K;  1EFU B;  2WSF G;  1IS8 A;  5DMZ A;  3B0B C;  1AIP C;  4R8Q A;  1EL6 A;  4E44 B;  1WPL A;  2WSC G;  2O01 G; 
#chains in the Genus database with same CATH homology
 4JA3 A;  2PN0 A;  1A9C A;  1N3T A;  1WUQ A;  1FBX A;  4NE6 B;  1WM9 A;  1FB1 A;  1TFE A;  1GTP A;  2P11 A;  2LNZ A;  4Q7J A;  3VEJ A;  2KR1 A;  1WUR A;  3BMB A;  4NE3 B;  4DRA E;  1N3S A;  2LO0 A;  4QPM A;  4DU6 A;  4DRB J;  1IS7 A;  4NE5 B;  4E45 B;  1N3R A;  1A8R A;  1EFU B;  5DMZ A;  1IS8 A;  3B0B C;  1AIP C;  4R8Q A;  1EL6 A;  4E44 B;  1WPL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3B0BC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations