3GF9A

Crystal structure of human intersectin 2 rhogef domain
Total Genus 79
2040608010012014016018001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
79
sequence length
190
structure length
182
Chain Sequence
IERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKVQMIGDILAAELSHMQAYIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNEG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Endocytosis
source organism Homo sapiens
publication title Crystal structure of human Intersectin 2 RhoGEF domain
rcsb
molecule keywords Intersectin 2
total genus 79
structure length 182
sequence length 190
ec nomenclature
pdb deposition date 2009-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00621 RhoGEF RhoGEF domain
A PF14604 SH3_9 Variant SH3 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.900.10 Mainly Alpha Up-down Bundle Dbl Homology Domain; Chain A Dbl homology (DH) domain 3gf9A00
1X86A 4MT7A 1XCGA 3KZ1A 3ODXA 5FI0A 3EO2A 1KI1B 1RJ2A 2NZ8B 2Z0QA 1BY1A 4YONA 3ODOA 4GZUA 3QBVB 2DFKA 2VRWB 3JV3A 1TXDA 5JHGA 5FI1A 1KZ7A 3GF9A 1NTYA 1LB1A 4GOUA 2PZ1A 3BJIA 2DX1A 3T06A 1KZGA 4D0OA 4D0NB 3KY9A 2KR9A 3KSYA 2RGNB 3P6AA 5JHHA 3MPXA 1FOEA 4GYVA 1DBHA 1XD4A 3ODWA 1F5XA
chains in the Genus database with same CATH superfamily
1X86A 4MT7A 1XCGA 3KZ1A 3ODXA 5FI0A 3EO2A 1KI1B 1RJ2A 2NZ8B 2Z0QA 1BY1A 4YONA 3ODOA 4GZUA 3QBVB 2DFKA 2VRWB 3JV3A 1TXDA 5JHGA 5FI1A 1KZ7A 3GF9A 1NTYA 1LB1A 4GOUA 2PZ1A 3BJIA 2DX1A 3T06A 1KZGA 4D0OA 4D0NB 3KY9A 2KR9A 3KSYA 2RGNB 3P6AA 5JHHA 3MPXA 1FOEA 4GYVA 1DBHA 1XD4A 3ODWA 1F5XA
chains in the Genus database with same CATH topology
1X86A 4MT7A 1XCGA 3KZ1A 3ODXA 5FI0A 3EO2A 1KI1B 1RJ2A 2NZ8B 2Z0QA 1BY1A 4YONA 3ODOA 4GZUA 3QBVB 2DFKA 2VRWB 3JV3A 1TXDA 5JHGA 5FI1A 1KZ7A 3GF9A 1NTYA 1LB1A 4GOUA 2PZ1A 3BJIA 2DX1A 3T06A 1KZGA 4D0OA 4D0NB 3KY9A 2KR9A 3KSYA 2RGNB 3P6AA 5JHHA 3MPXA 1FOEA 4GYVA 1DBHA 1XD4A 3ODWA 1F5XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1X86 A;  4MT7 A;  1XCG A;  3KZ1 A;  3ODX A;  5FI0 A;  3EO2 A;  1KI1 B;  1RJ2 A;  2NZ8 B;  2Z0Q A;  1BY1 A;  4YON A;  3ODO A;  4GZU A;  3QBV B;  2DFK A;  2VRW B;  3JV3 A;  1TXD A;  5JHG A;  5FI1 A;  1KZ7 A;  3GF9 A;  1NTY A;  1LB1 A;  4GOU A;  2PZ1 A;  3BJI A;  2DX1 A;  3T06 A;  1KZG A;  4D0O A;  4D0N B;  3KY9 A;  2KR9 A;  3KSY A;  2RGN B;  3P6A A;  5JHH A;  3MPX A;  1FOE A;  4GYV A;  1DBH A;  1XD4 A;  3ODW A;  1F5X A; 
#chains in the Genus database with same CATH topology
 1X86 A;  4MT7 A;  1XCG A;  3KZ1 A;  3ODX A;  5FI0 A;  3EO2 A;  1KI1 B;  1RJ2 A;  2NZ8 B;  2Z0Q A;  1BY1 A;  4YON A;  3ODO A;  4GZU A;  3QBV B;  2DFK A;  2VRW B;  3JV3 A;  1TXD A;  5JHG A;  5FI1 A;  1KZ7 A;  3GF9 A;  1NTY A;  1LB1 A;  4GOU A;  2PZ1 A;  3BJI A;  2DX1 A;  3T06 A;  1KZG A;  4D0O A;  4D0N B;  3KY9 A;  2KR9 A;  3KSY A;  2RGN B;  3P6A A;  5JHH A;  3MPX A;  1FOE A;  4GYV A;  1DBH A;  1XD4 A;  3ODW A;  1F5X A; 
#chains in the Genus database with same CATH homology
 1X86 A;  4MT7 A;  1XCG A;  3KZ1 A;  3ODX A;  5FI0 A;  3EO2 A;  1KI1 B;  1RJ2 A;  2NZ8 B;  2Z0Q A;  1BY1 A;  4YON A;  3ODO A;  4GZU A;  3QBV B;  2DFK A;  2VRW B;  3JV3 A;  1TXD A;  5JHG A;  5FI1 A;  1KZ7 A;  3GF9 A;  1NTY A;  1LB1 A;  4GOU A;  2PZ1 A;  3BJI A;  2DX1 A;  3T06 A;  1KZG A;  4D0O A;  4D0N B;  3KY9 A;  2KR9 A;  3KSY A;  2RGN B;  3P6A A;  5JHH A;  3MPX A;  1FOE A;  4GYV A;  1DBH A;  1XD4 A;  3ODW A;  1F5X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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