4D0OA

Akap13 (akap-lbc) dh domain
Total Genus 98
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
98
sequence length
237
structure length
234
Chain Sequence
b'ENLYFQSMEAESWSRIIDSKFLKQQKKDVVKRQEVIYELMQTEFHHVRTLKIMSGVYSQGMMADLLFEQQMVEKLFPCLDELISIHSQFFQRILERKKESLVDKNFLIKRIGDVLVNQFSGENAERLKKTYGKFCGQHNQSVNYFKDLYAKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords A-KINASE ANCHOR PROTEIN 13
publication title The Crystal Structure of the Rhoa : Akap-Lbc Dh-Ph Domain Complex.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Cell cycle
total genus 98
structure length 234
sequence length 237
chains with identical sequence B
ec nomenclature
pdb deposition date 2014-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00621 RhoGEF RhoGEF domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.900.10 Mainly Alpha Up-down Bundle Dbl Homology Domain; Chain A Dbl homology (DH) domain 4d0oA00
2PZ1A 1XCGA 2NZ8B 3QBVB 5JHHA 2Z0QA 1KZ7A 1XD4A 5FI1A 5JHGA 1LB1A 3KZ1A 4GZUA 3JV3A 1TXDA 1X86A 3ODOA 3BJIA 2VRWB 3KSYA 5FI0A 1KI1B 1BY1A 1KZGA 1F5XA 1FOEA 3P6AA 4MT7A 3T06A 2KR9A 4YONA 3EO2A 1NTYA 1DBHA 4GOUA 3KY9A 3GF9A 4D0OA 1RJ2A 2DFKA 2RGNB 2DX1A 3MPXA 4GYVA 3ODWA 4D0NB 3ODXA
chains in the Genus database with same CATH superfamily
2PZ1A 1XCGA 2NZ8B 3QBVB 5JHHA 2Z0QA 1KZ7A 1XD4A 5FI1A 5JHGA 1LB1A 3KZ1A 4GZUA 3JV3A 1TXDA 1X86A 3ODOA 3BJIA 2VRWB 3KSYA 5FI0A 1KI1B 1BY1A 1KZGA 1F5XA 1FOEA 3P6AA 4MT7A 3T06A 2KR9A 4YONA 3EO2A 1NTYA 1DBHA 4GOUA 3KY9A 3GF9A 4D0OA 1RJ2A 2DFKA 2RGNB 2DX1A 3MPXA 4GYVA 3ODWA 4D0NB 3ODXA
chains in the Genus database with same CATH topology
2PZ1A 1XCGA 2NZ8B 3QBVB 5JHHA 2Z0QA 1KZ7A 1XD4A 5FI1A 5JHGA 1LB1A 3KZ1A 4GZUA 3JV3A 1TXDA 1X86A 3ODOA 3BJIA 2VRWB 3KSYA 5FI0A 1KI1B 1BY1A 1KZGA 1F5XA 1FOEA 3P6AA 4MT7A 3T06A 2KR9A 4YONA 3EO2A 1NTYA 1DBHA 4GOUA 3KY9A 3GF9A 4D0OA 1RJ2A 2DFKA 2RGNB 2DX1A 3MPXA 4GYVA 3ODWA 4D0NB 3ODXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PZ1 A;  1XCG A;  2NZ8 B;  3QBV B;  5JHH A;  2Z0Q A;  1KZ7 A;  1XD4 A;  5FI1 A;  5JHG A;  1LB1 A;  3KZ1 A;  4GZU A;  3JV3 A;  1TXD A;  1X86 A;  3ODO A;  3BJI A;  2VRW B;  3KSY A;  5FI0 A;  1KI1 B;  1BY1 A;  1KZG A;  1F5X A;  1FOE A;  3P6A A;  4MT7 A;  3T06 A;  2KR9 A;  4YON A;  3EO2 A;  1NTY A;  1DBH A;  4GOU A;  3KY9 A;  3GF9 A;  4D0O A;  1RJ2 A;  2DFK A;  2RGN B;  2DX1 A;  3MPX A;  4GYV A;  3ODW A;  4D0N B;  3ODX A; 
#chains in the Genus database with same CATH topology
 2PZ1 A;  1XCG A;  2NZ8 B;  3QBV B;  5JHH A;  2Z0Q A;  1KZ7 A;  1XD4 A;  5FI1 A;  5JHG A;  1LB1 A;  3KZ1 A;  4GZU A;  3JV3 A;  1TXD A;  1X86 A;  3ODO A;  3BJI A;  2VRW B;  3KSY A;  5FI0 A;  1KI1 B;  1BY1 A;  1KZG A;  1F5X A;  1FOE A;  3P6A A;  4MT7 A;  3T06 A;  2KR9 A;  4YON A;  3EO2 A;  1NTY A;  1DBH A;  4GOU A;  3KY9 A;  3GF9 A;  4D0O A;  1RJ2 A;  2DFK A;  2RGN B;  2DX1 A;  3MPX A;  4GYV A;  3ODW A;  4D0N B;  3ODX A; 
#chains in the Genus database with same CATH homology
 2PZ1 A;  1XCG A;  2NZ8 B;  3QBV B;  5JHH A;  2Z0Q A;  1KZ7 A;  1XD4 A;  5FI1 A;  5JHG A;  1LB1 A;  3KZ1 A;  4GZU A;  3JV3 A;  1TXD A;  1X86 A;  3ODO A;  3BJI A;  2VRW B;  3KSY A;  5FI0 A;  1KI1 B;  1BY1 A;  1KZG A;  1F5X A;  1FOE A;  3P6A A;  4MT7 A;  3T06 A;  2KR9 A;  4YON A;  3EO2 A;  1NTY A;  1DBH A;  4GOU A;  3KY9 A;  3GF9 A;  4D0O A;  1RJ2 A;  2DFK A;  2RGN B;  2DX1 A;  3MPX A;  4GYV A;  3ODW A;  4D0N B;  3ODX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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