3LW5 | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	95
structure length	95
Chain Sequence	SALVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHVVAYYILATTSNGYDPAFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 95 atoms

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95 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Photosynthesis
publication title	Structure determination and improved model of plant photosystem I pubmed doi rcsb
molecule keywords	Photosystem I P700 chlorophyll a apoprotein A1
total genus	9
structure length	95
sequence length	95
ec nomenclature
pdb deposition date	2010-02-23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	Chlorophyll a-b binding protein like	3lw5G00

2WSEG 2WSEK 2O01G 2WSCG 2WSCK 2WSFG 2WSFK 3LW5G 3LW5K
chains in the Genus database with same CATH superfamily

4NE5B 4E45B 2WSEG 1IS7A 1EL6A 1WPLA 4DRAE 2WSCK 4DU6A 2P11A 1N3SA 4Q7JA 2PN0A 4E44B 1WURA 2KR1A 2WSEK 2WSFG 1WUQA 4R8QA 4QPMA 1N3TA 4NE6B 3BMBA 4JA3A 2O01G 1A9CA 2LNZA 1FB1A 2LO0A 2WSFK 1A8RA 3LW5G 5DMZA 1N3RA 1GTPA 1IS8A 1AIPC 2WSCG 4NE3B 1FBXA 3VEJA 1EFUB 3LW5K 1WM9A 1TFEA 3B0BC 4DRBJ
chains in the Genus database with same CATH topology

2WSEG 2WSEK 2O01G 2WSCG 2WSCK 2WSFG 2WSFK 3LW5G 3LW5K
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2WSE G;  2WSE K;  2O01 G;  2WSC G;  2WSC K;  2WSF G;  2WSF K;  3LW5 G;  3LW5 K; 
#chains in the Genus database with same CATH topology
 4NE5 B;  4E45 B;  2WSE G;  1IS7 A;  1EL6 A;  1WPL A;  4DRA E;  2WSC K;  4DU6 A;  2P11 A;  1N3S A;  4Q7J A;  2PN0 A;  4E44 B;  1WUR A;  2KR1 A;  2WSE K;  2WSF G;  1WUQ A;  4R8Q A;  4QPM A;  1N3T A;  4NE6 B;  3BMB A;  4JA3 A;  2O01 G;  1A9C A;  2LNZ A;  1FB1 A;  2LO0 A;  2WSF K;  1A8R A;  3LW5 G;  5DMZ A;  1N3R A;  1GTP A;  1IS8 A;  1AIP C;  2WSC G;  4NE3 B;  1FBX A;  3VEJ A;  1EFU B;  3LW5 K;  1WM9 A;  1TFE A;  3B0B C;  4DRB J; 
#chains in the Genus database with same CATH homology
 2WSE G;  2WSE K;  2O01 G;  2WSC G;  2WSC K;  2WSF G;  2WSF K;  3LW5 G;  3LW5 K;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3LW5G

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN