3LW5 | Genus

Total Genus 9

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	9
sequence length	95
structure length	95
Chain Sequence	SALVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGLTHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHVVAYYILATTSNGYDPAFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 95 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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95 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure determination and improved model of plant photosystem I pubmed doi rcsb
molecule keywords	Photosystem I P700 chlorophyll a apoprotein A1
molecule tags	Photosynthesis
total genus	9
structure length	95
sequence length	95
ec nomenclature
pdb deposition date	2010-02-23

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	Chlorophyll a-b binding protein like	3lw5G00

2WSCK 2WSFK 2WSEK 3LW5G 2WSCG 2WSFG 2O01G 3LW5K 2WSEG
chains in the Genus database with same CATH superfamily

1N3RA 1A9CA 2WSEK 1FBXA 1GTPA 1WM9A 1WURA 4E45B 3LW5K 2WSEG 1N3TA 3BMBA 4E44B 1FB1A 5DMZA 3LW5G 4JA3A 1EFUB 4DU6A 2O01G 1EL6A 3B0BC 1IS8A 1A8RA 1TFEA 4R8QA 4DRBJ 1N3SA 1IS7A 2PN0A 1WPLA 2LNZA 2P11A 4Q7JA 2WSCK 2KR1A 1WUQA 2WSFK 4QPMA 1AIPC 3VEJA 2LO0A 4NE3B 2WSCG 2WSFG 4NE6B 4DRAE 4NE5B
chains in the Genus database with same CATH topology

2WSCK 2WSFK 2WSEK 3LW5G 2WSCG 2WSFG 2O01G 3LW5K 2WSEG
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2WSC K;  2WSF K;  2WSE K;  3LW5 G;  2WSC G;  2WSF G;  2O01 G;  3LW5 K;  2WSE G; 
#chains in the Genus database with same CATH topology
 1N3R A;  1A9C A;  2WSE K;  1FBX A;  1GTP A;  1WM9 A;  1WUR A;  4E45 B;  3LW5 K;  2WSE G;  1N3T A;  3BMB A;  4E44 B;  1FB1 A;  5DMZ A;  3LW5 G;  4JA3 A;  1EFU B;  4DU6 A;  2O01 G;  1EL6 A;  3B0B C;  1IS8 A;  1A8R A;  1TFE A;  4R8Q A;  4DRB J;  1N3S A;  1IS7 A;  2PN0 A;  1WPL A;  2LNZ A;  2P11 A;  4Q7J A;  2WSC K;  2KR1 A;  1WUQ A;  2WSF K;  4QPM A;  1AIP C;  3VEJ A;  2LO0 A;  4NE3 B;  2WSC G;  2WSF G;  4NE6 B;  4DRA E;  4NE5 B; 
#chains in the Genus database with same CATH homology
 2WSC K;  2WSF K;  2WSE K;  3LW5 G;  2WSC G;  2WSF G;  2O01 G;  3LW5 K;  2WSE G;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3LW5G

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN