3LW5 | Genus

Total Genus 16

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	16
sequence length	84
structure length	84
Chain Sequence	DFIGSPTNLIMVTSTSLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGVVGHIIGVGVVLGLKNIGAL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 84 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

84 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Photosynthesis
publication title	Structure determination and improved model of plant photosystem I pubmed doi rcsb
molecule keywords	Photosystem I P700 chlorophyll a apoprotein A1
total genus	16
structure length	84
sequence length	84
ec nomenclature
pdb deposition date	2010-02-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
K	PF01241	PSI_PSAK	Photosystem I psaG / psaK

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.40	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	Chlorophyll a-b binding protein like	3lw5K00

2WSCK 3LW5G 2WSEK 2O01G 2WSFG 3LW5K 2WSFK 2WSCG 2WSEG
chains in the Genus database with same CATH superfamily

2WSCK 3LW5G 2WSEK 1IS8A 1FB1A 3BMBA 1N3TA 2O01G 1WUQA 3B0BC 5DMZA 1TFEA 2P11A 2KR1A 4NE3B 2WSFG 1A9CA 4DRAE 3LW5K 4Q7JA 4NE5B 4R8QA 1WPLA 4E45B 1GTPA 3VEJA 4JA3A 2LO0A 2WSFK 4QPMA 2WSCG 2LNZA 4E44B 2WSEG 1N3SA 1A8RA 1EL6A 1WM9A 1WURA 1EFUB 1AIPC 2PN0A 1N3RA 1FBXA 4DU6A 1IS7A 4DRBJ 4NE6B
chains in the Genus database with same CATH topology

2WSCK 3LW5G 2WSEK 2O01G 2WSFG 3LW5K 2WSFK 2WSCG 2WSEG
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2WSC K;  3LW5 G;  2WSE K;  2O01 G;  2WSF G;  3LW5 K;  2WSF K;  2WSC G;  2WSE G; 
#chains in the Genus database with same CATH topology
 2WSC K;  3LW5 G;  2WSE K;  1IS8 A;  1FB1 A;  3BMB A;  1N3T A;  2O01 G;  1WUQ A;  3B0B C;  5DMZ A;  1TFE A;  2P11 A;  2KR1 A;  4NE3 B;  2WSF G;  1A9C A;  4DRA E;  3LW5 K;  4Q7J A;  4NE5 B;  4R8Q A;  1WPL A;  4E45 B;  1GTP A;  3VEJ A;  4JA3 A;  2LO0 A;  2WSF K;  4QPM A;  2WSC G;  2LNZ A;  4E44 B;  2WSE G;  1N3S A;  1A8R A;  1EL6 A;  1WM9 A;  1WUR A;  1EFU B;  1AIP C;  2PN0 A;  1N3R A;  1FBX A;  4DU6 A;  1IS7 A;  4DRB J;  4NE6 B; 
#chains in the Genus database with same CATH homology
 2WSC K;  3LW5 G;  2WSE K;  2O01 G;  2WSF G;  3LW5 K;  2WSF K;  2WSC G;  2WSE G;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

3LW5K

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations