3U2G | Genus

Total Genus 53

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	53
sequence length	274
structure length	274
Chain Sequence	TYEIRGQVASGFGDQSWDASSFAGFYYDIDDNVSTETLTVSDLDGNVIPEGGLVYTTTIADVDFEYYNPDAGWDQYPVMGFFAEEYIPINPDKADKIAKLVLDSDDKYTIRTGEMLDLGEGYAIEAKQVDVDGEKVWLEFTKDGEFVDDEIISVSTADDEANTWDVELDDIEDEDDVVVLKVHVNQVFQGAVDSIAQIEGLWLIDYANAMTIESDDEFGNLDDVSIDGDTLKISNEDTFTLTRDSEEEIGEGMYFMIADTSSSDLRYYPYVEKT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5d032988c9bb9836ae0d8340/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5d032988c9bb9836ae0d8340/pdb.gz): 1858 ms

reading 274 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

274 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 33 ms

Adding embedded #jmolscript: select ({0:273});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Structural protein
source organism	Methanosarcina acetivorans
publication title	Structure of the surface layer of the methanogenic archaean Methanosarcina acetivorans. pubmed doi rcsb
molecule keywords	S-layer protein MA0829
total genus	53
structure length	274
sequence length	274
ec nomenclature
pdb deposition date	2011-10-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF07752	S-layer	S-layer protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.98.40	Mainly Beta	Sandwich	Tick-borne Encephalitis virus Glycoprotein; domain 1	Tick-borne Encephalitis virus Glycoprotein; domain 1	3u2gA02
3.30.1830.20	Alpha Beta	2-Layer Sandwich	YehR-like fold	YehR-like fold	3u2gA01

3U2HA 3U2GA
chains in the Genus database with same CATH superfamily

5JHLA 4UT6A 3U2GA 3N42F 5IZ7A 4ADJA 3N40F 3C5XA 2ALAA 1URZA 3N43F 3N41F 3P54A 4FG0A 4UT9A 3U2HA 5GZOA 1UZGA 2JOEA 3J2PA 4OJDH 4B3VA 3N44F 2I69A 5JHMA 1WLGA 4GT0A 4HJ1A 3G7TA 1TG8A 1RERA 1OK8A 3I50E 3UAJA 3UC0A 4OJCA 4UTCA 5LCVA 1SVBA 4ADIA 4UTAA 4UTBA 5H37A 4GSXA 5LBSA 1OANA 1OKEA 3J27A 5LBVA 5GZNA 5IREA 3C6EA 4ADGA 4OJEH 2HG0A
chains in the Genus database with same CATH topology

4HJ1A 3U2HA 3U2GA 4OJDH 4B3VA 4ADJA 4ADIA 4OJCA 4ADGA 4OJEH
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3U2H A;  3U2G A; 
#chains in the Genus database with same CATH topology
 5JHL A;  4UT6 A;  3U2G A;  3N42 F;  5IZ7 A;  4ADJ A;  3N40 F;  3C5X A;  2ALA A;  1URZ A;  3N43 F;  3N41 F;  3P54 A;  4FG0 A;  4UT9 A;  3U2H A;  5GZO A;  1UZG A;  2JOE A;  3J2P A;  4OJD H;  4B3V A;  3N44 F;  2I69 A;  5JHM A;  1WLG A;  4GT0 A;  4HJ1 A;  3G7T A;  1TG8 A;  1RER A;  1OK8 A;  3I50 E;  3UAJ A;  3UC0 A;  4OJC A;  4UTC A;  5LCV A;  1SVB A;  4ADI A;  4UTA A;  4UTB A;  5H37 A;  4GSX A;  5LBS A;  1OAN A;  1OKE A;  3J27 A;  5LBV A;  5GZN A;  5IRE A;  3C6E A;  4ADG A;  4OJE H;  2HG0 A; 
#chains in the Genus database with same CATH homology
 4HJ1 A;  3U2H A;  3U2G A;  4OJD H;  4B3V A;  4ADJ A;  4ADI A;  4OJC A;  4ADG A;  4OJE H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3U2GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations