3U2HA

Crystal structure of the c-terminal duf1608 domain of the methanosarcina acetivorans s-layer (ma0829) protein
Total Genus 48

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
270
structure length
256
Chain Sequence
EIRGQVASGFGDQSWDASSFAGFYYDIDDNVSTETLTVSDLDGNVIPEGGLVYTTTIADVDFEYYNPDAGWDQYPVMGFFAEEYIPINPDKADKIAKLVLDSDDKYTIRTGEMLDLGEGYAIEAKQVDVDGEKVWLEFTKDGEFVDDEIINTWDVELDDIEDEDDVVVLKVHVNQVFQIAQIEGLWLIDYANAMTIESDDEFGNLDDVSIDGDTLKISNEDTFTLTRDSEEEIGEGMYFMIADTSSSDLRYYPYVE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Structural protein
source organism Methanosarcina acetivorans
publication title Structure of the surface layer of the methanogenic archaean Methanosarcina acetivorans.
pubmed doi rcsb
molecule keywords S-layer protein MA0829
total genus 48
structure length 256
sequence length 270
ec nomenclature
pdb deposition date 2011-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07752 S-layer S-layer protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.98.40 Mainly Beta Sandwich Tick-borne Encephalitis virus Glycoprotein; domain 1 Tick-borne Encephalitis virus Glycoprotein; domain 1 3u2hA02
3.30.1830.20 Alpha Beta 2-Layer Sandwich YehR-like fold YehR-like fold 3u2hA01
3U2GA 3U2HA
chains in the Genus database with same CATH superfamily
3C5XA 1WLGA 3G7TA 3J27A 5LBVA 3U2GA 3I50E 3J2PA 3N42F 3N41F 4B3VA 5GZOA 1TG8A 4UTAA 1SVBA 3C6EA 4ADIA 3N44F 5LBSA 2I69A 4ADJA 4UTCA 4UTBA 5GZNA 4ADGA 1OKEA 2HG0A 4GT0A 3UC0A 4OJCA 2ALAA 4GSXA 5JHMA 1URZA 1RERA 3P54A 1OK8A 4UT9A 5IZ7A 5LCVA 3N43F 5H37A 1OANA 2JOEA 5IREA 4HJ1A 4FG0A 3UAJA 4OJEH 4UT6A 1UZGA 4OJDH 3U2HA 3N40F 5JHLA
chains in the Genus database with same CATH topology
4OJCA 4ADIA 3U2GA 4HJ1A 4OJEH 4ADJA 4OJDH 3U2HA 4ADGA 4B3VA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3U2G A;  3U2H A; 
#chains in the Genus database with same CATH topology
 3C5X A;  1WLG A;  3G7T A;  3J27 A;  5LBV A;  3U2G A;  3I50 E;  3J2P A;  3N42 F;  3N41 F;  4B3V A;  5GZO A;  1TG8 A;  4UTA A;  1SVB A;  3C6E A;  4ADI A;  3N44 F;  5LBS A;  2I69 A;  4ADJ A;  4UTC A;  4UTB A;  5GZN A;  4ADG A;  1OKE A;  2HG0 A;  4GT0 A;  3UC0 A;  4OJC A;  2ALA A;  4GSX A;  5JHM A;  1URZ A;  1RER A;  3P54 A;  1OK8 A;  4UT9 A;  5IZ7 A;  5LCV A;  3N43 F;  5H37 A;  1OAN A;  2JOE A;  5IRE A;  4HJ1 A;  4FG0 A;  3UAJ A;  4OJE H;  4UT6 A;  1UZG A;  4OJD H;  3U2H A;  3N40 F;  5JHL A; 
#chains in the Genus database with same CATH homology
 4OJC A;  4ADI A;  3U2G A;  4HJ1 A;  4OJE H;  4ADJ A;  4OJD H;  3U2H A;  4ADG A;  4B3V A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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