The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
16
|
sequence length |
125
|
structure length |
111
|
Chain Sequence |
MRCVGVGNRDFVEGVSGGAWVDLVLEHGGCVTTMAQGKPTLDFELTKTTAGGLEYTVVVTVHGVTAMITPRSPSVEVKLPDYGELTLDCEPRSGTGHLKCKVRMEKLRIKG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural insights into the neutralization mechanism of a higher primate antibody against dengue virus.
pubmed doi rcsb |
| molecule keywords |
envelope protein
|
| molecule tags |
Viral protein/immune system
|
| source organism |
Dengue virus 4
|
| total genus |
16
|
| structure length |
111
|
| sequence length |
125
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-10-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00869 | Flavi_glycoprot | Flavivirus glycoprotein, central and dimerisation domains |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Tick-borne Encephalitis virus Glycoprotein; domain 1 | Tick-borne Encephalitis virus Glycoprotein, domain 1 |
#chains in the Genus database with same CATH superfamily 5LCV A; 1OKE A; 3J27 A; 4UT6 A; 3J2P A; 3N42 F; 4GSX A; 1OK8 A; 3N40 F; 3P54 A; 1OAN A; 5IZ7 A; 5IRE A; 3C6E A; 5JHM A; 3N41 F; 4UTB A; 5JHL A; 4UTA A; 3UC0 A; 1URZ A; 2I69 A; 5LBS A; 4FG0 A; 3N44 F; 3C5X A; 1TG8 A; 3UAJ A; 3I50 E; 1SVB A; 1RER A; 5H37 A; 1UZG A; 5LBV A; 4GT0 A; 2ALA A; 3G7T A; 2HG0 A; 5GZN A; 5GZO A; 4UTC A; 4UT9 A; 3N43 F; #chains in the Genus database with same CATH topology 5LCV A; 1OKE A; 3J27 A; 4UT6 A; 4B3V A; 3J2P A; 3N42 F; 4GSX A; 4OJC A; 1OK8 A; 1WLG A; 3N40 F; 3P54 A; 1OAN A; 4OJE H; 5IZ7 A; 5IRE A; 4ADI A; 3C6E A; 5JHM A; 3N41 F; 3U2H A; 4UTB A; 5JHL A; 4UTA A; 3UC0 A; 1URZ A; 2I69 A; 4ADG A; 5LBS A; 4FG0 A; 3N44 F; 3C5X A; 4HJ1 A; 1TG8 A; 3UAJ A; 3I50 E; 1SVB A; 1RER A; 5H37 A; 3U2G A; 1UZG A; 5LBV A; 4GT0 A; 4OJD H; 2ALA A; 3G7T A; 2HG0 A; 5GZN A; 5GZO A; 4UTC A; 4ADJ A; 4UT9 A; 3N43 F; #chains in the Genus database with same CATH homology 5LCV A; 1OKE A; 3J27 A; 4UT6 A; 3J2P A; 3N42 F; 4GSX A; 1OK8 A; 3N40 F; 3P54 A; 1OAN A; 5IZ7 A; 5IRE A; 3C6E A; 5JHM A; 3N41 F; 4UTB A; 5JHL A; 4UTA A; 3UC0 A; 1URZ A; 2I69 A; 5LBS A; 4FG0 A; 3N44 F; 3C5X A; 1TG8 A; 3UAJ A; 3I50 E; 1SVB A; 1RER A; 5H37 A; 1UZG A; 5LBV A; 4GT0 A; 2ALA A; 3G7T A; 2HG0 A; 5GZN A; 5GZO A; 4UTC A; 4UT9 A; 3N43 F;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
