The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
56
|
sequence length |
159
|
structure length |
159
|
Chain Sequence |
IYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEVLKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHITPLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPARVLTQHYVSLFGIAKEQYKKYAEWLKG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Structure of an Archaeal Viral Integrase Reveals an Evolutionarily Conserved Catalytic Core yet Supports a Mechanism of DNA Cleavage in trans.
pubmed doi rcsb |
| molecule keywords |
Probable integrase
|
| molecule tags |
Recombination
|
| source organism |
Sulfolobus virus 1
|
| total genus |
56
|
| structure length |
159
|
| sequence length |
159
|
| ec nomenclature | |
| pdb deposition date | 2011-12-05 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF16795 | Phage_integr_3 | Archaeal phage integrase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | hpI Integrase; Chain A | Intergrase catalytic core |
#chains in the Genus database with same CATH superfamily 1Z19 A; 3C28 A; 4DKS A; 1MA7 A; 1FLO A; 2CRX A; 1P4E C; 1NZB A; 1Q3U A; 3VCF A; 1M6X C; 1CRX A; 1A0P A; 3MGV A; 5DOR A; 1OUQ A; 1AIH A; 1Q3V A; 4A8E A; 3UXU A; 5C6K A; 1AE9 A; 3C29 A; 1F44 A; 1P7D A; 5CRX A; 3NKH A; 2A3V A; 1KBU A; 3CRX A; 1PVQ A; 1P4E A; 1XNS A; 1M6X A; 1Z1B A; 1PVR A; 4CRX A; 5DCF A; 1DRG A; 2HOF A; 2HOI A; 1XO0 A; 1PVP A; #chains in the Genus database with same CATH topology 1Z19 A; 3SQI A; 3C28 A; 4E0J A; 4DKS A; 1MA7 A; 1FLO A; 2CRX A; 1P4E C; 1NZB A; 4ACO A; 1Q3U A; 3VCF A; 1M6X C; 1CRX A; 1A0P A; 3MGV A; 4E0P A; 4E10 A; 5DOR A; 4F41 A; 1OUQ A; 1AIH A; 1Q3V A; 4A8E A; 3UXU A; 5C6K A; 1AE9 A; 3C29 A; 1F44 A; 2V6E A; 1P7D A; 5CRX A; 3NKH A; 4E0G A; 2A3V A; 1KBU A; 3CRX A; 1PVQ A; 1P4E A; 1XNS A; 1M6X A; 1Z1B A; 4F43 A; 1PVR A; 3T79 A; 4CRX A; 5DCF A; 4E0Z A; 1DRG A; 2HOF A; 2HOI A; 4E0Y A; 1XO0 A; 1PVP A; 4DWP A; #chains in the Genus database with same CATH homology 1Z19 A; 3C28 A; 4DKS A; 1MA7 A; 1FLO A; 2CRX A; 1P4E C; 1NZB A; 1Q3U A; 3VCF A; 1M6X C; 1CRX A; 1A0P A; 3MGV A; 5DOR A; 1OUQ A; 1AIH A; 1Q3V A; 4A8E A; 3UXU A; 5C6K A; 1AE9 A; 3C29 A; 1F44 A; 1P7D A; 5CRX A; 3NKH A; 2A3V A; 1KBU A; 3CRX A; 1PVQ A; 1P4E A; 1XNS A; 1M6X A; 1Z1B A; 1PVR A; 4CRX A; 5DCF A; 1DRG A; 2HOF A; 2HOI A; 1XO0 A; 1PVP A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
