1P4EC

Flpe w330f mutant-dna holliday junction complex
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
publication title The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Dna binding protein/recombination/dna
total genus 126
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2003-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1p4eC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1p4eC01
4CRXA 1AIHA 4A8EA 5DORA 3UXUA 3CRXA 5CRXA 1A0PA 1Z1BA 1Q3VA 2CRXA 5C6KA 3C29A 1M6XC 1MA7A 1CRXA 1PVQA 1P4EC 2HOFA 1XNSA 1PVPA 1F44A 1XO0A 1FLOA 2HOIA 1Z19A 3VCFA 3NKHA 1AE9A 1OUQA 1DRGA 2A3VA 1M6XA 4DKSA 3C28A 1Q3UA 1NZBA 1PVRA 1P4EA 3MGVA 1P7DA 5DCFA 1KBUA
chains in the Genus database with same CATH superfamily
5DV9A 2XR1A 3CRXA 1RY2A 2OO4A 4PUIA 4JI6C 1I94C 2CRXA 4JI1C 1CRXA 1AMUA 3CQ2A 4LF8C 2HOFA 3CQ3A 1UKKA 1Z19A 4FUQA 2HHHC 2P2JA 3A26A 4JYAC 5LMNC 4DV2C 2V7BA 4OXIA 5KYTA 4DR6C 2Y4NA 3I08A 4KHPC 3B7WA 1O90A 1GPMA 3UOWA 3R9WA 4K0BA 1O93A 3CW9A 5BSRA 4LFCC 1USPA 5T8TA 1TH5A 3O2EA 2ZZMA 3T79A 4RLQA 1V26A 3TQIA 4LF4C 2D27A 2UUCC 4RLFA 4NOZA 2UXBC 5K85A 2OPLA 4DR4C 4TPSB 1PG4A 2BJOA 3T1YC 2UXDC 3UXUA 4ODJA 1IBKC 2YWBA 4IR7A 4GS5A 2QW0X 2VQFC 1HNXC 4DR2C 3SQIA 5IFIA 1VLAA 1MDFA 4YHHC 4HPVA 4X64C 5BUSA 4I9FA 3MGVA 4L2ZA 4BC9A 1ZB8A 2YX1A 4D4IA 3LUSA 1AIHA 5IT9D 1Q3VA 4I9GA 5FLXD 3C29A 2ONFA 2WD9A 3IEVA 4K0KC 3DAYA 2E0GA 3FCEA 1WCJA 3VCFA 4JI4C 1HR0C 1UWDA 4BC7A 2UUBC 3AF5A 4E0YA 2UUAC 5ADZA 4ACOA 4D57A 1P7LA 4F43A 4EATA 4DV0C 2E8CA 2Y4OA 2Z51A 1N33C 4LF7C 2UXCC 2D1TA 3LNVA 4DV5C 3CJEA 2D1SA 2E7GA 3NKHA 4BCAA 3LAXA 4JM1A 2MCQA 5A1GA 2D1RA 5BR8C 5DCFA 4JI7C 1N34C 4RVOA 4U5YD 4PUGA 5GTDA 1JOSA 4L4QA 4R1LA 4LFBC 1Z1BA 1IB8A 2D28C 4GKKC 2KDNA 4E0JA 4MTNA 3E7WA 1LQLA 4XX2A 3PESA 3TUFA 5A2QD 3A4IA 3C28A 2E8FA 4G1IA 1P7DA 4NXMC 3FCCA 4DR5C 3ETOA 2DYJA 2V6EA 5BSWA 1MD9A 2QVYX 5DORA 5CRXA 5A1IA 5IWAC 2ASBA 2P2QA 4LF9C 2MMAB 2NCLA 3L95X 3ETCA 3NPDA 1QM4A 3IEUA 1PA4A 4R0MA 2QL8A 4NDNA 4E10A 2A3VA 3GKUA 4PROC 4RMNA 2D7VA 4DKSA 4R1MA 4DR3C 2E8EA 2PT7G 1V25A 5CZXA 3TDEA 1VEHA 2P2MA 4E0ZA 3VNRA 5C6KA 1MA7A 2DHMA 4X65C 3IPLA 2PROA 3N54B 1PVPA 4DV7C 3GR1A 2AYAA 3VNSA 4DUYC 1AE9A 4B3RC 1WH9A 4ZLPA 5H9UA 3C5EA 1USPB 1ULTA 4B3TC 4JI0C 4MH4A 1ML8A 4KTVA 4B3SC 4DG9A 4JI2C 1HNZC 3GR0A 4LF5C 1O92A 4DCUA 1PVQA 1XS3A 2F4VC 1OUQA 1DRGA 1IBLC 2P2FA 2YWCA 3K6RA 4DWPA 5KEIA 2P2BA 1N2FA 4LE5A 3AY0A 1K0RA 1MXCA 1MXBA 2JNVA 3N2QA 1XHJA 5BSMA 3VNQA 3NYQA 1NY8A 1XMOC 5AE2A 4JI3C 1HH2P 4DCTA 1XMQC 4OYCA 4AQYC 4DG8A 1PVRA 4E0PA 1XRCA 5BSVA 3EQ6A 3TR3A 1PG3A 3LGXA 4WS9A 1N36C 4IZ6A 3JAMD 5AE1A 4G36A 4A8EA 4DV1C 3LNOA 2BH1X 3J80D 2OBVA 3IMLA 3R9XA 2P20A 3R44A 3DHVA 4WV3A 2QVXX 1RG9A 1J5EC 2M5HA 5BURA 5BUQA 2YCBA 2ZM6C 3GPCA 1N32C 1L2FA 4FTFA 2CY1A 3G7SA 4GXQA 4YY3C 1M6XC 4F41A 1YJ7A 4GKJC 2JMPA 1T5DX 4RVNA 1F44A 1XO0A 1FJGC 3DLPX 4ZJZA 4ISBA 2CXCA 4RM3A 3EERA 4JI8C 4L7IA 2QVZX 4NXNC 3PROC 4E0GA 5LMUC 5K8FA 2E5LC 2DPLA 2HJGA 1PU1A 4PHTA 3UEBA 1MXAA 5BSUA 5LCIA 3H2TA 1FLOA 1WF3A 1EGAA 5T8SA 4DR7C 3J81D 2KZ0A 2UU9C 3RV2A 3S82A 1T5HX 1P4EA 1LCIA 3UX3A 1IBMC 4B3MC 4GXRA 5E7QA 4DV6C 3E7XA 3OTOC 4PZPA 2M5OA 3NYRA 4LFAC 5BSTA 1A0PA 4RM2A 5AE3A 3A25A 2EGTA 4DV4C 1XNSA 2HOIA 1FUGA 2OPLB 5CZVA 3L8CA 1HNWC 1M6XA 3RG2A 2VZEA 4DV3C 3I07A 2P02A 4BBYA 1KKGA 3A9VA 1KBUA 4DUZC 1XNRC 2CU6A 1O9TA 4G37A 4DR1C 4DCVA 4LF6C 2ZZNA 1XRBA 3CQ1A 4DCSA 2WP0C 4OX9C 2KZFA 4PUHA 4JI5C 4D4GA 2D1QA 1BA3A 5A19A 1NZBA 1NYEA 3UX2A 4FUTA 4X62C 1ZB9A 5JRHA 1XNQC 2VSQA 3T1HC 4CRXA 3A9UA 3CW8X 4X66C 1V60A 5KYVA 1MKYA 1XRAA 3UZ0A 3KXWA 1QWIA 4JV5C 3NI2A 3SO4A 1P4EC 1MDBA 4BSZA 2VQEC 1Q3UA 2PN2A 2ATWA 2Y27A 3PBKA 4D56A 2MM9A 4KTTA 3AF6A
chains in the Genus database with same CATH topology
4CRXA 1AIHA 4A8EA 5DORA 3UXUA 3CRXA 5CRXA 1A0PA 1Z1BA 1Q3VA 2CRXA 5C6KA 3C29A 1M6XC 1MA7A 1CRXA 1PVQA 1P4EC 2HOFA 1XNSA 1PVPA 1F44A 1XO0A 1FLOA 2HOIA 1Z19A 3VCFA 3NKHA 1AE9A 1OUQA 1DRGA 2A3VA 1M6XA 4DKSA 3C28A 1Q3UA 1NZBA 1PVRA 1P4EA 3MGVA 1P7DA 5DCFA 1KBUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CRX A;  1AIH A;  4A8E A;  5DOR A;  3UXU A;  3CRX A;  5CRX A;  1A0P A;  1Z1B A;  1Q3V A;  2CRX A;  5C6K A;  3C29 A;  1M6X C;  1MA7 A;  1CRX A;  1PVQ A;  1P4E C;  2HOF A;  1XNS A;  1PVP A;  1F44 A;  1XO0 A;  1FLO A;  2HOI A;  1Z19 A;  3VCF A;  3NKH A;  1AE9 A;  1OUQ A;  1DRG A;  2A3V A;  1M6X A;  4DKS A;  3C28 A;  1Q3U A;  1NZB A;  1PVR A;  1P4E A;  3MGV A;  1P7D A;  5DCF A;  1KBU A; 
#chains in the Genus database with same CATH topology
 5DV9 A;  2XR1 A;  3CRX A;  1RY2 A;  2OO4 A;  4PUI A;  4JI6 C;  1I94 C;  2CRX A;  4JI1 C;  1CRX A;  1AMU A;  3CQ2 A;  4LF8 C;  2HOF A;  3CQ3 A;  1UKK A;  1Z19 A;  4FUQ A;  2HHH C;  2P2J A;  3A26 A;  4JYA C;  5LMN C;  4DV2 C;  2V7B A;  4OXI A;  5KYT A;  4DR6 C;  2Y4N A;  3I08 A;  4KHP C;  3B7W A;  1O90 A;  1GPM A;  3UOW A;  3R9W A;  4K0B A;  1O93 A;  3CW9 A;  5BSR A;  4LFC C;  1USP A;  5T8T A;  1TH5 A;  3O2E A;  2ZZM A;  3T79 A;  4RLQ A;  1V26 A;  3TQI A;  4LF4 C;  2D27 A;  2UUC C;  4RLF A;  4NOZ A;  2UXB C;  5K85 A;  2OPL A;  4DR4 C;  4TPS B;  1PG4 A;  2BJO A;  3T1Y C;  2UXD C;  3UXU A;  4ODJ A;  1IBK C;  2YWB A;  4IR7 A;  4GS5 A;  2QW0 X;  2VQF C;  1HNX C;  4DR2 C;  3SQI A;  5IFI A;  1VLA A;  1MDF A;  4YHH C;  4HPV A;  4X64 C;  5BUS A;  4I9F A;  3MGV A;  4L2Z A;  4BC9 A;  1ZB8 A;  2YX1 A;  4D4I A;  3LUS A;  1AIH A;  5IT9 D;  1Q3V A;  4I9G A;  5FLX D;  3C29 A;  2ONF A;  2WD9 A;  3IEV A;  4K0K C;  3DAY A;  2E0G A;  3FCE A;  1WCJ A;  3VCF A;  4JI4 C;  1HR0 C;  1UWD A;  4BC7 A;  2UUB C;  3AF5 A;  4E0Y A;  2UUA C;  5ADZ A;  4ACO A;  4D57 A;  1P7L A;  4F43 A;  4EAT A;  4DV0 C;  2E8C A;  2Y4O A;  2Z51 A;  1N33 C;  4LF7 C;  2UXC C;  2D1T A;  3LNV A;  4DV5 C;  3CJE A;  2D1S A;  2E7G A;  3NKH A;  4BCA A;  3LAX A;  4JM1 A;  2MCQ A;  5A1G A;  2D1R A;  5BR8 C;  5DCF A;  4JI7 C;  1N34 C;  4RVO A;  4U5Y D;  4PUG A;  5GTD A;  1JOS A;  4L4Q A;  4R1L A;  4LFB C;  1Z1B A;  1IB8 A;  2D28 C;  4GKK C;  2KDN A;  4E0J A;  4MTN A;  3E7W A;  1LQL A;  4XX2 A;  3PES A;  3TUF A;  5A2Q D;  3A4I A;  3C28 A;  2E8F A;  4G1I A;  1P7D A;  4NXM C;  3FCC A;  4DR5 C;  3ETO A;  2DYJ A;  2V6E A;  5BSW A;  1MD9 A;  2QVY X;  5DOR A;  5CRX A;  5A1I A;  5IWA C;  2ASB A;  2P2Q A;  4LF9 C;  2MMA B;  2NCL A;  3L95 X;  3ETC A;  3NPD A;  1QM4 A;  3IEU A;  1PA4 A;  4R0M A;  2QL8 A;  4NDN A;  4E10 A;  2A3V A;  3GKU A;  4PRO C;  4RMN A;  2D7V A;  4DKS A;  4R1M A;  4DR3 C;  2E8E A;  2PT7 G;  1V25 A;  5CZX A;  3TDE A;  1VEH A;  2P2M A;  4E0Z A;  3VNR A;  5C6K A;  1MA7 A;  2DHM A;  4X65 C;  3IPL A;  2PRO A;  3N54 B;  1PVP A;  4DV7 C;  3GR1 A;  2AYA A;  3VNS A;  4DUY C;  1AE9 A;  4B3R C;  1WH9 A;  4ZLP A;  5H9U A;  3C5E A;  1USP B;  1ULT A;  4B3T C;  4JI0 C;  4MH4 A;  1ML8 A;  4KTV A;  4B3S C;  4DG9 A;  4JI2 C;  1HNZ C;  3GR0 A;  4LF5 C;  1O92 A;  4DCU A;  1PVQ A;  1XS3 A;  2F4V C;  1OUQ A;  1DRG A;  1IBL C;  2P2F A;  2YWC A;  3K6R A;  4DWP A;  5KEI A;  2P2B A;  1N2F A;  4LE5 A;  3AY0 A;  1K0R A;  1MXC A;  1MXB A;  2JNV A;  3N2Q A;  1XHJ A;  5BSM A;  3VNQ A;  3NYQ A;  1NY8 A;  1XMO C;  5AE2 A;  4JI3 C;  1HH2 P;  4DCT A;  1XMQ C;  4OYC A;  4AQY C;  4DG8 A;  1PVR A;  4E0P A;  1XRC A;  5BSV A;  3EQ6 A;  3TR3 A;  1PG3 A;  3LGX A;  4WS9 A;  1N36 C;  4IZ6 A;  3JAM D;  5AE1 A;  4G36 A;  4A8E A;  4DV1 C;  3LNO A;  2BH1 X;  3J80 D;  2OBV A;  3IML A;  3R9X A;  2P20 A;  3R44 A;  3DHV A;  4WV3 A;  2QVX X;  1RG9 A;  1J5E C;  2M5H A;  5BUR A;  5BUQ A;  2YCB A;  2ZM6 C;  3GPC A;  1N32 C;  1L2F A;  4FTF A;  2CY1 A;  3G7S A;  4GXQ A;  4YY3 C;  1M6X C;  4F41 A;  1YJ7 A;  4GKJ C;  2JMP A;  1T5D X;  4RVN A;  1F44 A;  1XO0 A;  1FJG C;  3DLP X;  4ZJZ A;  4ISB A;  2CXC A;  4RM3 A;  3EER A;  4JI8 C;  4L7I A;  2QVZ X;  4NXN C;  3PRO C;  4E0G A;  5LMU C;  5K8F A;  2E5L C;  2DPL A;  2HJG A;  1PU1 A;  4PHT A;  3UEB A;  1MXA A;  5BSU A;  5LCI A;  3H2T A;  1FLO A;  1WF3 A;  1EGA A;  5T8S A;  4DR7 C;  3J81 D;  2KZ0 A;  2UU9 C;  3RV2 A;  3S82 A;  1T5H X;  1P4E A;  1LCI A;  3UX3 A;  1IBM C;  4B3M C;  4GXR A;  5E7Q A;  4DV6 C;  3E7X A;  3OTO C;  4PZP A;  2M5O A;  3NYR A;  4LFA C;  5BST A;  1A0P A;  4RM2 A;  5AE3 A;  3A25 A;  2EGT A;  4DV4 C;  1XNS A;  2HOI A;  1FUG A;  2OPL B;  5CZV A;  3L8C A;  1HNW C;  1M6X A;  3RG2 A;  2VZE A;  4DV3 C;  3I07 A;  2P02 A;  4BBY A;  1KKG A;  3A9V A;  1KBU A;  4DUZ C;  1XNR C;  2CU6 A;  1O9T A;  4G37 A;  4DR1 C;  4DCV A;  4LF6 C;  2ZZN A;  1XRB A;  3CQ1 A;  4DCS A;  2WP0 C;  4OX9 C;  2KZF A;  4PUH A;  4JI5 C;  4D4G A;  2D1Q A;  1BA3 A;  5A19 A;  1NZB A;  1NYE A;  3UX2 A;  4FUT A;  4X62 C;  1ZB9 A;  5JRH A;  1XNQ C;  2VSQ A;  3T1H C;  4CRX A;  3A9U A;  3CW8 X;  4X66 C;  1V60 A;  5KYV A;  1MKY A;  1XRA A;  3UZ0 A;  3KXW A;  1QWI A;  4JV5 C;  3NI2 A;  3SO4 A;  1P4E C;  1MDB A;  4BSZ A;  2VQE C;  1Q3U A;  2PN2 A;  2ATW A;  2Y27 A;  3PBK A;  4D56 A;  2MM9 A;  4KTT A;  3AF6 A; 
#chains in the Genus database with same CATH homology
 4CRX A;  1AIH A;  4A8E A;  5DOR A;  3UXU A;  3CRX A;  5CRX A;  1A0P A;  1Z1B A;  1Q3V A;  2CRX A;  5C6K A;  3C29 A;  1M6X C;  1MA7 A;  1CRX A;  1PVQ A;  1P4E C;  2HOF A;  1XNS A;  1PVP A;  1F44 A;  1XO0 A;  1FLO A;  2HOI A;  1Z19 A;  3VCF A;  3NKH A;  1AE9 A;  1OUQ A;  1DRG A;  2A3V A;  1M6X A;  4DKS A;  3C28 A;  1Q3U A;  1NZB A;  1PVR A;  1P4E A;  3MGV A;  1P7D A;  5DCF A;  1KBU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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