1P4EC

Flpe w330f mutant-dna holliday junction complex
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
421
structure length
399
Chain Sequence
b'SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
publication title The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Dna binding protein/recombination/dna
total genus 126
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2003-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1p4eC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1p4eC01
5C6KA 4CRXA 5DCFA 1KBUA 2HOIA 5DORA 1F44A 3C28A 1PVRA 1M6XA 3CRXA 4DKSA 1P4EA 1AIHA 1CRXA 3C29A 1XO0A 2CRXA 1A0PA 2A3VA 2HOFA 1Q3UA 3VCFA 1DRGA 1M6XC 1PVPA 4A8EA 1P4EC 1FLOA 1PVQA 1NZBA 1Z19A 5CRXA 3NKHA 1OUQA 1Z1BA 1MA7A 3UXUA 3MGVA 1AE9A 1XNSA 1Q3VA 1P7DA
chains in the Genus database with same CATH superfamily
4OX9C 1KBUA 5A19A 2PROA 4FTFA 5BSTA 3A9UA 5JRHA 1WCJA 1P4EA 1RG9A 3NYQA 3H2TA 4YHHC 1ZB9A 2ZZMA 4A8EA 2UUAC 4DR6C 3NYRA 4DUZC 4G36A 1ULTA 3AF5A 4I9GA 5A1IA 1LCIA 1MXAA 4GS5A 2QW0X 4KTVA 1PG4A 2VQFC 1IBLC 4ZLPA 4DG9A 4RLFA 1PVRA 1PG3A 2D27A 2P2QA 1V26A 3SQIA 5K8FA 4HPVA 4F43A 3CJEA 4JI0C 3UZ0A 4LF4C 5IFIA 4NDNA 4X66C 4F41A 4DCVA 4JI6C 3L95X 3E7WA 3FCCA 3MGVA 2D1RA 2D7VA 4LE5A 4GXRA 3VNRA 3DAYA 2Y4NA 1XMQC 2MMAB 4GKJC 2EGTA 3AF6A 3IMLA 4KTTA 5A2QD 2CXCA 5KEIA 5BSUA 2Z51A 1LQLA 4OXIA 1MDFA 4DV3C 1N36C 1N33C 4JI7C 1MKYA 1XS3A 5KYTA 5CZVA 4RM2A 4X62C 4DR7C 4WS9A 5BSWA 4E10A 1XRBA 5LMUC 5FLXD 2P2JA 2CY1A 3A4IA 3UOWA 1MA7A 2WP0C 3DHVA 4DV2C 3T1YC 1USPB 1P7LA 1YJ7A 2AYAA 2MM9A 3UX3A 5BR8C 1T5HX 1O9TA 2UUCC 4DV1C 1RY2A 3C29A 3ETOA 5BSVA 4PZPA 2A3VA 4RM3A 1XNRC 3ETCA 4LF6C 2QL8A 1HNZC 3UXUA 1XNQC 1P7DA 4NOZA 2VQEC 3G7SA 1FJGC 1MD9A 2QVYX 2E5LC 4BBYA 3VNSA 1N2FA 2DHMA 4DG8A 2KDNA 1IBKC 2E0GA 2HOFA 3VCFA 1DRGA 3TQIA 3GPCA 3O2EA 2PT7G 1Z1BA 2Y27A 4B3MC 3B7WA 3T79A 4JV5C 3TR3A 4PHTA 5BURA 1HNWC 3A26A 5C6KA 2ATWA 2YCBA 3PESA 4GKKC 4EATA 4E0YA 1HR0C 1HNXC 4E0PA 1IB8A 2UU9C 5IT9D 2OPLB 3IEUA 5CRXA 2QVZX 2V6EA 1QWIA 1O93A 4RVNA 5AE2A 4JI5C 1ML8A 1V25A 4DR1C 4CRXA 3LUSA 1UWDA 4BC9A 4B3RC 2HOIA 5BUQA 4DV0C 3CRXA 1FUGA 2JMPA 4LFCC 1O90A 1UKKA 4JYAC 1WH9A 5A1GA 2DYJA 3OTOC 1FLOA 1AMUA 4TPSB 1XRAA 3GKUA 1TH5A 3LAXA 4D4IA 4DR2C 2M5HA 2Y4OA 4RMNA 3PROC 5K85A 4D4GA 4L7IA 4D57A 3R9XA 5DCFA 3LNVA 4DWPA 4D56A 4JM1A 4OYCA 1L2FA 1GPMA 4AQYC 4LFBC 1MDBA 1NY8A 1PVPA 3CW8X 5BSMA 2M5OA 4DR5C 4PUGA 2UXBC 2YWBA 3RG2A 1QM4A 4LFAC 2ASBA 4X65C 3E7XA 4FUQA 4R1LA 4E0ZA 1AIHA 3AY0A 1BA3A 3CW9A 2CU6A 3K6RA 5IWAC 3LNOA 4LF5C 5CZXA 4PUIA 2YWCA 5AE1A 1XRCA 3CQ2A 4WV3A 4JI8C 2DPLA 3IPLA 2YX1A 2CRXA 3IEVA 1T5DX 4ISBA 3CQ1A 3R44A 4IR7A 1XHJA 4KHPC 4K0BA 5T8TA 2F4VC 4DR4C 1PU1A 2OBVA 2MCQA 5ADZA 1K0RA 2QVXX 2P2BA 4DKSA 2ZM6C 4BSZA 3T1HC 3C5EA 1VEHA 5E7QA 2E7GA 2E8EA 2ZZNA 3R9WA 4L4QA 2KZFA 1M6XC 5T8SA 4BCAA 4GXQA 4DV7C 4NXNC 1OUQA 1AE9A 5DV9A 4MTNA 2V7BA 4IZ6A 1MXCA 3I07A 4R1MA 4DR3C 1CRXA 4RVOA 3S82A 1XO0A 3NPDA 3RV2A 4ODJA 4L2ZA 2P20A 4JI2C 1P4EC 3N54B 3NKHA 3SO4A 1USPA 4DCUA 1IBMC 4B3SC 2BJOA 3C28A 3J81D 3DLPX 4RLQA 2E8FA 2JNVA 4YY3C 2D28C 3GR1A 3UEBA 1PVQA 2NCLA 1Z19A 4X64C 1JOSA 4LF7C 2VZEA 1XNSA 1V60A 2P02A 2BH1X 4I9FA 3FCEA 4DV5C 4K0KC 3EERA 4E0JA 4BC7A 3NI2A 5LMNC 4JI4C 4ACOA 4LF8C 5AE3A 5BSRA 3I08A 3N2QA 3UX2A 4DCTA 4U5YD 3VNQA 1J5EC 3PBKA 5H9UA 3L8CA 3TDEA 4E0GA 2D1SA 1Q3VA 4B3TC 5LCIA 4DV6C 4XX2A 1HH2P 1MXBA 1O92A 2E8CA 3A9VA 1I94C 2D1QA 1EGAA 2UUBC 2HJGA 4G37A 1XMOC 5BUSA 5GTDA 4FUTA 1A0PA 3A25A 1N34C 2OPLA 1WF3A 3KXWA 3J80D 5KYVA 1NZBA 4MH4A 2WD9A 2P2FA 1N32C 4ZJZA 4DUYC 3JAMD 2VSQA 5DORA 1F44A 1M6XA 2P2MA 4LF9C 2UXCC 4JI3C 1ZB8A 3EQ6A 3TUFA 2KZ0A 4PROC 1PA4A 2HHHC 1Q3UA 2UXDC 2XR1A 1VLAA 1KKGA 2PN2A 4DV4C 4NXMC 3CQ3A 4PUHA 3LGXA 2ONFA 3GR0A 2OO4A 1NYEA 2D1TA 4R0MA 4DCSA 4JI1C 4G1IA
chains in the Genus database with same CATH topology
5C6KA 4CRXA 5DCFA 1KBUA 2HOIA 5DORA 1F44A 3C28A 1PVRA 1M6XA 3CRXA 4DKSA 1P4EA 1AIHA 1CRXA 3C29A 1XO0A 2CRXA 1A0PA 2A3VA 2HOFA 1Q3UA 3VCFA 1DRGA 1M6XC 1PVPA 4A8EA 1P4EC 1FLOA 1PVQA 1NZBA 1Z19A 5CRXA 3NKHA 1OUQA 1Z1BA 1MA7A 3UXUA 3MGVA 1AE9A 1XNSA 1Q3VA 1P7DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C6K A;  4CRX A;  5DCF A;  1KBU A;  2HOI A;  5DOR A;  1F44 A;  3C28 A;  1PVR A;  1M6X A;  3CRX A;  4DKS A;  1P4E A;  1AIH A;  1CRX A;  3C29 A;  1XO0 A;  2CRX A;  1A0P A;  2A3V A;  2HOF A;  1Q3U A;  3VCF A;  1DRG A;  1M6X C;  1PVP A;  4A8E A;  1P4E C;  1FLO A;  1PVQ A;  1NZB A;  1Z19 A;  5CRX A;  3NKH A;  1OUQ A;  1Z1B A;  1MA7 A;  3UXU A;  3MGV A;  1AE9 A;  1XNS A;  1Q3V A;  1P7D A; 
#chains in the Genus database with same CATH topology
 4OX9 C;  1KBU A;  5A19 A;  2PRO A;  4FTF A;  5BST A;  3A9U A;  5JRH A;  1WCJ A;  1P4E A;  1RG9 A;  3NYQ A;  3H2T A;  4YHH C;  1ZB9 A;  2ZZM A;  4A8E A;  2UUA C;  4DR6 C;  3NYR A;  4DUZ C;  4G36 A;  1ULT A;  3AF5 A;  4I9G A;  5A1I A;  1LCI A;  1MXA A;  4GS5 A;  2QW0 X;  4KTV A;  1PG4 A;  2VQF C;  1IBL C;  4ZLP A;  4DG9 A;  4RLF A;  1PVR A;  1PG3 A;  2D27 A;  2P2Q A;  1V26 A;  3SQI A;  5K8F A;  4HPV A;  4F43 A;  3CJE A;  4JI0 C;  3UZ0 A;  4LF4 C;  5IFI A;  4NDN A;  4X66 C;  4F41 A;  4DCV A;  4JI6 C;  3L95 X;  3E7W A;  3FCC A;  3MGV A;  2D1R A;  2D7V A;  4LE5 A;  4GXR A;  3VNR A;  3DAY A;  2Y4N A;  1XMQ C;  2MMA B;  4GKJ C;  2EGT A;  3AF6 A;  3IML A;  4KTT A;  5A2Q D;  2CXC A;  5KEI A;  5BSU A;  2Z51 A;  1LQL A;  4OXI A;  1MDF A;  4DV3 C;  1N36 C;  1N33 C;  4JI7 C;  1MKY A;  1XS3 A;  5KYT A;  5CZV A;  4RM2 A;  4X62 C;  4DR7 C;  4WS9 A;  5BSW A;  4E10 A;  1XRB A;  5LMU C;  5FLX D;  2P2J A;  2CY1 A;  3A4I A;  3UOW A;  1MA7 A;  2WP0 C;  3DHV A;  4DV2 C;  3T1Y C;  1USP B;  1P7L A;  1YJ7 A;  2AYA A;  2MM9 A;  3UX3 A;  5BR8 C;  1T5H X;  1O9T A;  2UUC C;  4DV1 C;  1RY2 A;  3C29 A;  3ETO A;  5BSV A;  4PZP A;  2A3V A;  4RM3 A;  1XNR C;  3ETC A;  4LF6 C;  2QL8 A;  1HNZ C;  3UXU A;  1XNQ C;  1P7D A;  4NOZ A;  2VQE C;  3G7S A;  1FJG C;  1MD9 A;  2QVY X;  2E5L C;  4BBY A;  3VNS A;  1N2F A;  2DHM A;  4DG8 A;  2KDN A;  1IBK C;  2E0G A;  2HOF A;  3VCF A;  1DRG A;  3TQI A;  3GPC A;  3O2E A;  2PT7 G;  1Z1B A;  2Y27 A;  4B3M C;  3B7W A;  3T79 A;  4JV5 C;  3TR3 A;  4PHT A;  5BUR A;  1HNW C;  3A26 A;  5C6K A;  2ATW A;  2YCB A;  3PES A;  4GKK C;  4EAT A;  4E0Y A;  1HR0 C;  1HNX C;  4E0P A;  1IB8 A;  2UU9 C;  5IT9 D;  2OPL B;  3IEU A;  5CRX A;  2QVZ X;  2V6E A;  1QWI A;  1O93 A;  4RVN A;  5AE2 A;  4JI5 C;  1ML8 A;  1V25 A;  4DR1 C;  4CRX A;  3LUS A;  1UWD A;  4BC9 A;  4B3R C;  2HOI A;  5BUQ A;  4DV0 C;  3CRX A;  1FUG A;  2JMP A;  4LFC C;  1O90 A;  1UKK A;  4JYA C;  1WH9 A;  5A1G A;  2DYJ A;  3OTO C;  1FLO A;  1AMU A;  4TPS B;  1XRA A;  3GKU A;  1TH5 A;  3LAX A;  4D4I A;  4DR2 C;  2M5H A;  2Y4O A;  4RMN A;  3PRO C;  5K85 A;  4D4G A;  4L7I A;  4D57 A;  3R9X A;  5DCF A;  3LNV A;  4DWP A;  4D56 A;  4JM1 A;  4OYC A;  1L2F A;  1GPM A;  4AQY C;  4LFB C;  1MDB A;  1NY8 A;  1PVP A;  3CW8 X;  5BSM A;  2M5O A;  4DR5 C;  4PUG A;  2UXB C;  2YWB A;  3RG2 A;  1QM4 A;  4LFA C;  2ASB A;  4X65 C;  3E7X A;  4FUQ A;  4R1L A;  4E0Z A;  1AIH A;  3AY0 A;  1BA3 A;  3CW9 A;  2CU6 A;  3K6R A;  5IWA C;  3LNO A;  4LF5 C;  5CZX A;  4PUI A;  2YWC A;  5AE1 A;  1XRC A;  3CQ2 A;  4WV3 A;  4JI8 C;  2DPL A;  3IPL A;  2YX1 A;  2CRX A;  3IEV A;  1T5D X;  4ISB A;  3CQ1 A;  3R44 A;  4IR7 A;  1XHJ A;  4KHP C;  4K0B A;  5T8T A;  2F4V C;  4DR4 C;  1PU1 A;  2OBV A;  2MCQ A;  5ADZ A;  1K0R A;  2QVX X;  2P2B A;  4DKS A;  2ZM6 C;  4BSZ A;  3T1H C;  3C5E A;  1VEH A;  5E7Q A;  2E7G A;  2E8E A;  2ZZN A;  3R9W A;  4L4Q A;  2KZF A;  1M6X C;  5T8S A;  4BCA A;  4GXQ A;  4DV7 C;  4NXN C;  1OUQ A;  1AE9 A;  5DV9 A;  4MTN A;  2V7B A;  4IZ6 A;  1MXC A;  3I07 A;  4R1M A;  4DR3 C;  1CRX A;  4RVO A;  3S82 A;  1XO0 A;  3NPD A;  3RV2 A;  4ODJ A;  4L2Z A;  2P20 A;  4JI2 C;  1P4E C;  3N54 B;  3NKH A;  3SO4 A;  1USP A;  4DCU A;  1IBM C;  4B3S C;  2BJO A;  3C28 A;  3J81 D;  3DLP X;  4RLQ A;  2E8F A;  2JNV A;  4YY3 C;  2D28 C;  3GR1 A;  3UEB A;  1PVQ A;  2NCL A;  1Z19 A;  4X64 C;  1JOS A;  4LF7 C;  2VZE A;  1XNS A;  1V60 A;  2P02 A;  2BH1 X;  4I9F A;  3FCE A;  4DV5 C;  4K0K C;  3EER A;  4E0J A;  4BC7 A;  3NI2 A;  5LMN C;  4JI4 C;  4ACO A;  4LF8 C;  5AE3 A;  5BSR A;  3I08 A;  3N2Q A;  3UX2 A;  4DCT A;  4U5Y D;  3VNQ A;  1J5E C;  3PBK A;  5H9U A;  3L8C A;  3TDE A;  4E0G A;  2D1S A;  1Q3V A;  4B3T C;  5LCI A;  4DV6 C;  4XX2 A;  1HH2 P;  1MXB A;  1O92 A;  2E8C A;  3A9V A;  1I94 C;  2D1Q A;  1EGA A;  2UUB C;  2HJG A;  4G37 A;  1XMO C;  5BUS A;  5GTD A;  4FUT A;  1A0P A;  3A25 A;  1N34 C;  2OPL A;  1WF3 A;  3KXW A;  3J80 D;  5KYV A;  1NZB A;  4MH4 A;  2WD9 A;  2P2F A;  1N32 C;  4ZJZ A;  4DUY C;  3JAM D;  2VSQ A;  5DOR A;  1F44 A;  1M6X A;  2P2M A;  4LF9 C;  2UXC C;  4JI3 C;  1ZB8 A;  3EQ6 A;  3TUF A;  2KZ0 A;  4PRO C;  1PA4 A;  2HHH C;  1Q3U A;  2UXD C;  2XR1 A;  1VLA A;  1KKG A;  2PN2 A;  4DV4 C;  4NXM C;  3CQ3 A;  4PUH A;  3LGX A;  2ONF A;  3GR0 A;  2OO4 A;  1NYE A;  2D1T A;  4R0M A;  4DCS A;  4JI1 C;  4G1I A; 
#chains in the Genus database with same CATH homology
 5C6K A;  4CRX A;  5DCF A;  1KBU A;  2HOI A;  5DOR A;  1F44 A;  3C28 A;  1PVR A;  1M6X A;  3CRX A;  4DKS A;  1P4E A;  1AIH A;  1CRX A;  3C29 A;  1XO0 A;  2CRX A;  1A0P A;  2A3V A;  2HOF A;  1Q3U A;  3VCF A;  1DRG A;  1M6X C;  1PVP A;  4A8E A;  1P4E C;  1FLO A;  1PVQ A;  1NZB A;  1Z19 A;  5CRX A;  3NKH A;  1OUQ A;  1Z1B A;  1MA7 A;  3UXU A;  3MGV A;  1AE9 A;  1XNS A;  1Q3V A;  1P7D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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