1P4EC

Flpe w330f mutant-dna holliday junction complex
Total Genus 126
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
126
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Dna binding protein/recombination/dna
molecule keywords 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
total genus 126
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2003-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1p4eC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1p4eC01
1PVRA 2CRXA 3C28A 1P4EA 1NZBA 1Z1BA 3UXUA 1M6XA 1CRXA 1XNSA 1Z19A 2HOFA 3VCFA 2A3VA 3NKHA 4DKSA 1PVQA 1MA7A 1M6XC 1F44A 1FLOA 3C29A 5CRXA 5DORA 1Q3UA 1A0PA 2HOIA 5DCFA 1Q3VA 1AIHA 4CRXA 1OUQA 1KBUA 1XO0A 1AE9A 3CRXA 1PVPA 4A8EA 5C6KA 3MGVA 1DRGA 1P7DA 1P4EC
chains in the Genus database with same CATH superfamily
4K0KC 2E7GA 5BSMA 1O9TA 4OX9C 4F43A 1Z19A 4RLQA 4IR7A 2D1SA 4PUGA 3UOWA 5GTDA 3EQ6A 3J80D 2PN2A 1O93A 2QL8A 2DYJA 1Q3UA 3CQ3A 3R9WA 5IFIA 4GKKC 4L7IA 4DV3C 3SO4A 1PG3A 1XMQC 3LNVA 1L2FA 4JI0C 4LF8C 4E0YA 4DCUA 3NYQA 2HJGA 2P2MA 3EERA 1XHJA 2MM9A 4L4QA 3OTOC 1AIHA 4FUTA 4DCSA 5BR8C 2JNVA 4DR1C 4LF9C 3R9XA 2HHHC 5AE3A 3N2QA 1TH5A 4BCAA 3ETOA 2VZEA 1IB8A 4FTFA 5FLXD 3GPCA 3L8CA 3DHVA 3T79A 1ZB8A 4DV1C 3I08A 4JYAC 4RLFA 3A25A 3UZ0A 3JAMD 3E7XA 2Y27A 4R0MA 3I07A 2BJOA 1I94C 1P7DA 1XMOC 2ZZMA 1NY8A 2UXDC 4D56A 3GR0A 4DV2C 4DUYC 4JI3C 1VLAA 1WCJA 1XRBA 4ODJA 5BSUA 5BSWA 2PT7G 1M6XC 4LFCC 3PESA 1XNRC 1PG4A 5KEIA 3LGXA 4RM3A 2CU6A 3VNQA 1QM4A 1K0RA 2KDNA 4DR4C 1M6XA 4DR5C 3TQIA 2E8CA 3NKHA 1XS3A 4G37A 4ACOA 1O90A 2CXCA 5CRXA 3GR1A 5AE2A 3SQIA 4GXRA 5DCFA 4NDNA 1KBUA 2Y4NA 3G7SA 4WS9A 2ZZNA 4DR7C 4LF4C 2P2QA 4ZJZA 1AMUA 1USPB 3T1YC 5H9UA 5LCIA 4LFBC 1P4EA 1MXBA 1NZBA 1MXCA 4LE5A 1J5EC 5CZXA 4JI7C 1ZB9A 4RVOA 3N54B 4JI6C 1N33C 1PVQA 2YWBA 3LNOA 3LUSA 2ZM6C 1MDFA 4E0JA 3IMLA 1AE9A 4L2ZA 3NYRA 2UXBC 3IPLA 1HNXC 3CW8X 2M5HA 3B7WA 4DG8A 3VNSA 4WV3A 2MMAB 5T8TA 2UUAC 5ADZA 4JI8C 4KTVA 4OXIA 3A26A 3K6RA 5BUQA 4DKSA 3TDEA 3IEUA 1HH2P 4I9GA 3FCEA 4PROC 1MDBA 4BSZA 1BA3A 1OUQA 4NXNC 4NOZA 1ML8A 4D4IA 1LQLA 4DV0C 5DV9A 2AYAA 1Z1BA 4U5YD 4R1LA 1F44A 3TR3A 1MXAA 5DORA 2HOIA 3RG2A 4JI4C 4XX2A 3H2TA 2VQFC 3E7WA 3NI2A 1XO0A 1V26A 5A19A 2QVYX 4KHPC 3MGVA 3DAYA 2OPLA 3C5EA 2BH1X 1T5HX 3UX2A 2KZ0A 4DR3C 3CQ2A 2DPLA 3DLPX 1XRAA 3TUFA 3PBKA 4RMNA 3VNRA 1FLOA 3CJEA 3UEBA 4X66C 3CRXA 5C6KA 1IBMC 2KZFA 2CY1A 4K0BA 2V6EA 4BC9A 4DR6C 4LF5C 2V7BA 1N2FA 1HNZC 1QWIA 4X62C 3GKUA 2QW0X 2P2JA 1MA7A 4I9FA 2D7VA 3C29A 5IT9D 1N34C 1A0PA 3O2EA 1LCIA 1EGAA 2OPLB 1MD9A 2P2BA 1PA4A 4ZLPA 4CRXA 1WF3A 3L95X 1PVPA 1USPA 5E7QA 4AQYC 2ATWA 5K8FA 2OBVA 1HR0C 1P7LA 4JV5C 2QVXX 3R44A 3J81D 1UWDA 1JOSA 4IZ6A 4G1IA 4D4GA 4B3RC 4RVNA 1FUGA 3KXWA 4F41A 4A8EA 2YX1A 2ASBA 3C28A 2D1QA 4JM1A 2F4VC 1NYEA 1PU1A 2EGTA 3UXUA 2WD9A 1CRXA 2P2FA 3CW9A 3LAXA 1RY2A 4MTNA 5K85A 4B3SC 5A1GA 3A9VA 4MH4A 2VSQA 5LMUC 4LF6C 2OO4A 3ETCA 5KYTA 4ISBA 2D1RA 2YWCA 2WP0C 4DV6C 4E10A 3S82A 4GXQA 5A1IA 1O92A 4GS5A 4PHTA 5CZVA 5BUSA 2Y4OA 1FJGC 5BSVA 3RV2A 3AF6A 4LF7C 1Q3VA 1V25A 4DWPA 2JMPA 1UKKA 4DCVA 5BURA 5AE1A 2Z51A 1WH9A 3T1HC 1DRGA 4PZPA 2P20A 4YY3C 2MCQA 1N36C 4R1MA 2M5OA 4X65C 5LMNC 1IBLC 4HPVA 1PVRA 2P02A 1XNQC 3VCFA 2A3VA 4PUIA 3NPDA 2E5LC 2VQEC 5KYVA 5T8SA 4X64C 4YHHC 1V60A 1N32C 2XR1A 5BSTA 4DV7C 2D27A 4E0ZA 4DCTA 5BSRA 4EATA 1HNWC 1RG9A 1ULTA 3AY0A 1KKGA 4BC7A 1T5DX 3FCCA 4OYCA 4GKJC 5A2QD 4TPSB 2D28C 2ONFA 2UUCC 2UUBC 4KTTA 1GPMA 4NXMC 4DV5C 3A4IA 2HOFA 4JI5C 2YCBA 2D1TA 3PROC 4E0GA 4E0PA 4G36A 4FUQA 4DUZC 4PUHA 5JRHA 2PROA 4JI2C 4B3TC 4JI1C 1XRCA 2E8EA 2QVZX 3AF5A 1P4EC 3CQ1A 2CRXA 5IWAC 1IBKC 4DR2C 2UU9C 2E0GA 4B3MC 1XNSA 4DV4C 3A9UA 4DG9A 2UXCC 1YJ7A 4D57A 2E8FA 1MKYA 2DHMA 2NCLA 4RM2A 3UX3A 1VEHA 4BBYA 4LFAC 3IEVA
chains in the Genus database with same CATH topology
1PVRA 2CRXA 3C28A 1P4EA 1NZBA 1Z1BA 3UXUA 1M6XA 1CRXA 1XNSA 1Z19A 2HOFA 3VCFA 2A3VA 3NKHA 4DKSA 1PVQA 1MA7A 1M6XC 1F44A 1FLOA 3C29A 5CRXA 5DORA 1Q3UA 1A0PA 2HOIA 5DCFA 1Q3VA 1AIHA 4CRXA 1OUQA 1KBUA 1XO0A 1AE9A 3CRXA 1PVPA 4A8EA 5C6KA 3MGVA 1DRGA 1P7DA 1P4EC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PVR A;  2CRX A;  3C28 A;  1P4E A;  1NZB A;  1Z1B A;  3UXU A;  1M6X A;  1CRX A;  1XNS A;  1Z19 A;  2HOF A;  3VCF A;  2A3V A;  3NKH A;  4DKS A;  1PVQ A;  1MA7 A;  1M6X C;  1F44 A;  1FLO A;  3C29 A;  5CRX A;  5DOR A;  1Q3U A;  1A0P A;  2HOI A;  5DCF A;  1Q3V A;  1AIH A;  4CRX A;  1OUQ A;  1KBU A;  1XO0 A;  1AE9 A;  3CRX A;  1PVP A;  4A8E A;  5C6K A;  3MGV A;  1DRG A;  1P7D A;  1P4E C; 
#chains in the Genus database with same CATH topology
 4K0K C;  2E7G A;  5BSM A;  1O9T A;  4OX9 C;  4F43 A;  1Z19 A;  4RLQ A;  4IR7 A;  2D1S A;  4PUG A;  3UOW A;  5GTD A;  3EQ6 A;  3J80 D;  2PN2 A;  1O93 A;  2QL8 A;  2DYJ A;  1Q3U A;  3CQ3 A;  3R9W A;  5IFI A;  4GKK C;  4L7I A;  4DV3 C;  3SO4 A;  1PG3 A;  1XMQ C;  3LNV A;  1L2F A;  4JI0 C;  4LF8 C;  4E0Y A;  4DCU A;  3NYQ A;  2HJG A;  2P2M A;  3EER A;  1XHJ A;  2MM9 A;  4L4Q A;  3OTO C;  1AIH A;  4FUT A;  4DCS A;  5BR8 C;  2JNV A;  4DR1 C;  4LF9 C;  3R9X A;  2HHH C;  5AE3 A;  3N2Q A;  1TH5 A;  4BCA A;  3ETO A;  2VZE A;  1IB8 A;  4FTF A;  5FLX D;  3GPC A;  3L8C A;  3DHV A;  3T79 A;  1ZB8 A;  4DV1 C;  3I08 A;  4JYA C;  4RLF A;  3A25 A;  3UZ0 A;  3JAM D;  3E7X A;  2Y27 A;  4R0M A;  3I07 A;  2BJO A;  1I94 C;  1P7D A;  1XMO C;  2ZZM A;  1NY8 A;  2UXD C;  4D56 A;  3GR0 A;  4DV2 C;  4DUY C;  4JI3 C;  1VLA A;  1WCJ A;  1XRB A;  4ODJ A;  5BSU A;  5BSW A;  2PT7 G;  1M6X C;  4LFC C;  3PES A;  1XNR C;  1PG4 A;  5KEI A;  3LGX A;  4RM3 A;  2CU6 A;  3VNQ A;  1QM4 A;  1K0R A;  2KDN A;  4DR4 C;  1M6X A;  4DR5 C;  3TQI A;  2E8C A;  3NKH A;  1XS3 A;  4G37 A;  4ACO A;  1O90 A;  2CXC A;  5CRX A;  3GR1 A;  5AE2 A;  3SQI A;  4GXR A;  5DCF A;  4NDN A;  1KBU A;  2Y4N A;  3G7S A;  4WS9 A;  2ZZN A;  4DR7 C;  4LF4 C;  2P2Q A;  4ZJZ A;  1AMU A;  1USP B;  3T1Y C;  5H9U A;  5LCI A;  4LFB C;  1P4E A;  1MXB A;  1NZB A;  1MXC A;  4LE5 A;  1J5E C;  5CZX A;  4JI7 C;  1ZB9 A;  4RVO A;  3N54 B;  4JI6 C;  1N33 C;  1PVQ A;  2YWB A;  3LNO A;  3LUS A;  2ZM6 C;  1MDF A;  4E0J A;  3IML A;  1AE9 A;  4L2Z A;  3NYR A;  2UXB C;  3IPL A;  1HNX C;  3CW8 X;  2M5H A;  3B7W A;  4DG8 A;  3VNS A;  4WV3 A;  2MMA B;  5T8T A;  2UUA C;  5ADZ A;  4JI8 C;  4KTV A;  4OXI A;  3A26 A;  3K6R A;  5BUQ A;  4DKS A;  3TDE A;  3IEU A;  1HH2 P;  4I9G A;  3FCE A;  4PRO C;  1MDB A;  4BSZ A;  1BA3 A;  1OUQ A;  4NXN C;  4NOZ A;  1ML8 A;  4D4I A;  1LQL A;  4DV0 C;  5DV9 A;  2AYA A;  1Z1B A;  4U5Y D;  4R1L A;  1F44 A;  3TR3 A;  1MXA A;  5DOR A;  2HOI A;  3RG2 A;  4JI4 C;  4XX2 A;  3H2T A;  2VQF C;  3E7W A;  3NI2 A;  1XO0 A;  1V26 A;  5A19 A;  2QVY X;  4KHP C;  3MGV A;  3DAY A;  2OPL A;  3C5E A;  2BH1 X;  1T5H X;  3UX2 A;  2KZ0 A;  4DR3 C;  3CQ2 A;  2DPL A;  3DLP X;  1XRA A;  3TUF A;  3PBK A;  4RMN A;  3VNR A;  1FLO A;  3CJE A;  3UEB A;  4X66 C;  3CRX A;  5C6K A;  1IBM C;  2KZF A;  2CY1 A;  4K0B A;  2V6E A;  4BC9 A;  4DR6 C;  4LF5 C;  2V7B A;  1N2F A;  1HNZ C;  1QWI A;  4X62 C;  3GKU A;  2QW0 X;  2P2J A;  1MA7 A;  4I9F A;  2D7V A;  3C29 A;  5IT9 D;  1N34 C;  1A0P A;  3O2E A;  1LCI A;  1EGA A;  2OPL B;  1MD9 A;  2P2B A;  1PA4 A;  4ZLP A;  4CRX A;  1WF3 A;  3L95 X;  1PVP A;  1USP A;  5E7Q A;  4AQY C;  2ATW A;  5K8F A;  2OBV A;  1HR0 C;  1P7L A;  4JV5 C;  2QVX X;  3R44 A;  3J81 D;  1UWD A;  1JOS A;  4IZ6 A;  4G1I A;  4D4G A;  4B3R C;  4RVN A;  1FUG A;  3KXW A;  4F41 A;  4A8E A;  2YX1 A;  2ASB A;  3C28 A;  2D1Q A;  4JM1 A;  2F4V C;  1NYE A;  1PU1 A;  2EGT A;  3UXU A;  2WD9 A;  1CRX A;  2P2F A;  3CW9 A;  3LAX A;  1RY2 A;  4MTN A;  5K85 A;  4B3S C;  5A1G A;  3A9V A;  4MH4 A;  2VSQ A;  5LMU C;  4LF6 C;  2OO4 A;  3ETC A;  5KYT A;  4ISB A;  2D1R A;  2YWC A;  2WP0 C;  4DV6 C;  4E10 A;  3S82 A;  4GXQ A;  5A1I A;  1O92 A;  4GS5 A;  4PHT A;  5CZV A;  5BUS A;  2Y4O A;  1FJG C;  5BSV A;  3RV2 A;  3AF6 A;  4LF7 C;  1Q3V A;  1V25 A;  4DWP A;  2JMP A;  1UKK A;  4DCV A;  5BUR A;  5AE1 A;  2Z51 A;  1WH9 A;  3T1H C;  1DRG A;  4PZP A;  2P20 A;  4YY3 C;  2MCQ A;  1N36 C;  4R1M A;  2M5O A;  4X65 C;  5LMN C;  1IBL C;  4HPV A;  1PVR A;  2P02 A;  1XNQ C;  3VCF A;  2A3V A;  4PUI A;  3NPD A;  2E5L C;  2VQE C;  5KYV A;  5T8S A;  4X64 C;  4YHH C;  1V60 A;  1N32 C;  2XR1 A;  5BST A;  4DV7 C;  2D27 A;  4E0Z A;  4DCT A;  5BSR A;  4EAT A;  1HNW C;  1RG9 A;  1ULT A;  3AY0 A;  1KKG A;  4BC7 A;  1T5D X;  3FCC A;  4OYC A;  4GKJ C;  5A2Q D;  4TPS B;  2D28 C;  2ONF A;  2UUC C;  2UUB C;  4KTT A;  1GPM A;  4NXM C;  4DV5 C;  3A4I A;  2HOF A;  4JI5 C;  2YCB A;  2D1T A;  3PRO C;  4E0G A;  4E0P A;  4G36 A;  4FUQ A;  4DUZ C;  4PUH A;  5JRH A;  2PRO A;  4JI2 C;  4B3T C;  4JI1 C;  1XRC A;  2E8E A;  2QVZ X;  3AF5 A;  1P4E C;  3CQ1 A;  2CRX A;  5IWA C;  1IBK C;  4DR2 C;  2UU9 C;  2E0G A;  4B3M C;  1XNS A;  4DV4 C;  3A9U A;  4DG9 A;  2UXC C;  1YJ7 A;  4D57 A;  2E8F A;  1MKY A;  2DHM A;  2NCL A;  4RM2 A;  3UX3 A;  1VEH A;  4BBY A;  4LFA C;  3IEV A; 
#chains in the Genus database with same CATH homology
 1PVR A;  2CRX A;  3C28 A;  1P4E A;  1NZB A;  1Z1B A;  3UXU A;  1M6X A;  1CRX A;  1XNS A;  1Z19 A;  2HOF A;  3VCF A;  2A3V A;  3NKH A;  4DKS A;  1PVQ A;  1MA7 A;  1M6X C;  1F44 A;  1FLO A;  3C29 A;  5CRX A;  5DOR A;  1Q3U A;  1A0P A;  2HOI A;  5DCF A;  1Q3V A;  1AIH A;  4CRX A;  1OUQ A;  1KBU A;  1XO0 A;  1AE9 A;  3CRX A;  1PVP A;  4A8E A;  5C6K A;  3MGV A;  1DRG A;  1P7D A;  1P4E C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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