1P4EA

Flpe w330f mutant-dna holliday junction complex
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
421
structure length
400
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Dna binding protein/recombination/dna
molecule keywords 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
total genus 122
structure length 400
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1p4eA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1p4eA01
1Z19A 1M6XC 2HOIA 3UXUA 1OUQA 1P4EC 1PVRA 1Q3UA 1CRXA 1PVQA 4A8EA 1FLOA 1XNSA 4CRXA 4DKSA 1F44A 1Z1BA 1MA7A 5C6KA 5DCFA 5DORA 3VCFA 5CRXA 1XO0A 2A3VA 2HOFA 3C28A 1P4EA 1AE9A 1DRGA 1M6XA 1P7DA 1Q3VA 3MGVA 3CRXA 1AIHA 1A0PA 3C29A 1PVPA 1NZBA 3NKHA 2CRXA 1KBUA
chains in the Genus database with same CATH superfamily
2P2FA 2HOIA 4BBYA 4LF8C 4LE5A 4ACOA 4NXMC 5H9UA 2PROA 1XMOC 3SO4A 2YWCA 4RM3A 3AF6A 4HPVA 2EGTA 1USPA 2NCLA 4JI8C 3IEVA 3JAMD 2E0GA 2P2JA 3PESA 4E0JA 3GR1A 2XR1A 4MTNA 2AYAA 2JMPA 5CZVA 3S82A 3A9VA 2VQFC 2ONFA 4RMNA 4BC9A 1JOSA 2D1SA 4PUIA 4DV0C 2BH1X 4B3TC 2VQEC 2D28C 2YX1A 1XNQC 3N2QA 3MGVA 5AE3A 4IZ6A 3J80D 3I07A 1XNRC 2YWBA 4ZJZA 4IR7A 3I08A 3TR3A 3DHVA 4E0PA 5BSTA 5IWAC 3PBKA 4DR7C 3RV2A 1Z1BA 1FJGC 5CRXA 4JI0C 5DORA 4F41A 3LNVA 4DCTA 2QVXX 3UX3A 3GPCA 2YCBA 2Y4OA 5ADZA 3LAXA 2UUBC 5FLXD 4RM2A 4U5YD 1IB8A 5AE2A 1PVQA 4DV5C 4JI6C 4ISBA 1T5DX 4CRXA 4E10A 4DV1C 4KTVA 3LGXA 3T1HC 4RLQA 1AE9A 1O90A 3A9UA 4D4IA 4BC7A 4LF4C 5GTDA 5KYVA 1USPB 2OPLA 1PVPA 3H2TA 4DR6C 5A1IA 1WCJA 4E0YA 3KXWA 3IEUA 1MXAA 1KBUA 5BUQA 4KTTA 3J81D 2KDNA 4PZPA 1PG4A 3DAYA 3IMLA 2UXBC 2OO4A 1AMUA 1N32C 3A25A 3CW8X 3R44A 3G7SA 2HHHC 2ZZNA 4X64C 1AIHA 1FUGA 4OYCA 1T5HX 4JI5C 4GXQA 4E0GA 1Z19A 4DCSA 3ETCA 5A1GA 1XRBA 4DWPA 1Q3UA 1ULTA 1QM4A 4RVNA 3N54B 1N2FA 1IBKC 3VCFA 1XO0A 4ZLPA 1HR0C 4DG9A 2Y27A 2D1RA 4WS9A 3NPDA 4TPSB 3B7WA 2UU9C 4JI1C 4NXNC 3AF5A 5BSMA 1NZBA 2P20A 4RLFA 2CY1A 1O92A 2Y4NA 2QL8A 2PN2A 2P2BA 1CRXA 3TUFA 3A26A 3K6RA 2E8FA 1KKGA 4LFAC 3L95X 5C6KA 2M5OA 2Z51A 4DV6C 4LFCC 2JNVA 1MXCA 3LUSA 1MXBA 1UWDA 1RY2A 4DV4C 1N33C 3CQ3A 4F43A 1ZB9A 2VSQA 1V60A 4JI7C 2DHMA 3GR0A 4BSZA 3UXUA 1V25A 1WH9A 4I9FA 2ASBA 3GKUA 2E5LC 3UZ0A 4ODJA 4DCUA 1WF3A 3C28A 4YHHC 4X65C 4PROC 1IBLC 3VNSA 1LCIA 1MDFA 1MD9A 1A0PA 3E7XA 2ZZMA 4GKKC 3EQ6A 1NYEA 1VEHA 3R9WA 3PROC 2M5HA 4L4QA 2D7VA 3CQ1A 4JM1A 4A8EA 3ETOA 4DV3C 2CU6A 1XNSA 3R9XA 4DKSA 4R1MA 4GS5A 4B3SC 5DCFA 1IBMC 2A3VA 2P2QA 2HOFA 4X66C 5T8SA 4BCAA 4JI3C 2HJGA 1M6XA 3UEBA 4WV3A 3VNQA 1L2FA 5BURA 2MMAB 4DG8A 4GKJC 2UXDC 4G1IA 4YY3C 4EATA 4G37A 5LMNC 4DV2C 1O9TA 4LF7C 4GXRA 4JV5C 3NYRA 4XX2A 1F44A 4FTFA 2KZFA 3SQIA 1YJ7A 3FCEA 3RG2A 3O2EA 2E8EA 2MM9A 1BA3A 3E7WA 1HH2P 2OBVA 5JRHA 4PUHA 2P2MA 3T1YC 4DR2C 1PG3A 1XRCA 2ATWA 5BSWA 2V7BA 4D56A 4E0ZA 4B3RC 5KYTA 2OPLB 1XHJA 5CZXA 4G36A 2UUAC 3CRXA 1I94C 1ZB8A 2F4VC 4I9GA 3UOWA 4JYAC 1RG9A 1V26A 2WD9A 3DLPX 5K8FA 2CXCA 5DV9A 1PVRA 2WP0C 4R0MA 5T8TA 4L7IA 4D4GA 1LQLA 1UKKA 1N36C 1XMQC 3TQIA 2E8CA 2DPLA 1MDBA 1DRGA 1P7DA 1HNWC 1Q3VA 1P7LA 4OX9C 1EGAA 2V6EA 2ZM6C 4DR4C 1M6XC 4LF9C 5LMUC 4FUQA 5KEIA 3CW9A 4L2ZA 1FLOA 4LF6C 3EERA 3CQ2A 3T79A 1XRAA 4DUYC 2QVYX 4DR5C 5A2QD 4LFBC 3UX2A 4RVOA 1MKYA 1J5EC 1VLAA 4NDNA 3AY0A 4DCVA 2QW0X 4R1LA 4JI2C 2CRXA 4OXIA 5IFIA 1PA4A 5BSRA 3OTOC 1XS3A 1P4EC 5BSVA 3A4IA 4MH4A 1K0RA 2D1QA 3C5EA 1O93A 5K85A 1TH5A 3FCCA 2P02A 4K0KC 4NOZA 2DYJA 5BUSA 2KZ0A 2E7GA 4K0BA 4DR1C 5BSUA 2D1TA 5A19A 3TDEA 3L8CA 1OUQA 5LCIA 4D57A 4PUGA 4AQYC 1MA7A 4B3MC 1HNZC 3CJEA 3NI2A 2QVZX 3LNOA 1PU1A 1P4EA 1HNXC 3NYQA 2UUCC 5AE1A 2PT7G 4JI4C 4DV7C 4FUTA 1N34C 5IT9D 4KHPC 2MCQA 2BJOA 4PHTA 1QWIA 2D27A 3IPLA 4DR3C 4DUZC 4LF5C 1GPMA 4X62C 1NY8A 2UXCC 5BR8C 2VZEA 3VNRA 1ML8A 5E7QA 3C29A 3NKHA
chains in the Genus database with same CATH topology
1Z19A 1M6XC 2HOIA 3UXUA 1OUQA 1P4EC 1PVRA 1Q3UA 1CRXA 1PVQA 4A8EA 1FLOA 1XNSA 4CRXA 4DKSA 1F44A 1Z1BA 1MA7A 5C6KA 5DCFA 5DORA 3VCFA 5CRXA 1XO0A 2A3VA 2HOFA 3C28A 1P4EA 1AE9A 1DRGA 1M6XA 1P7DA 1Q3VA 3MGVA 3CRXA 1AIHA 1A0PA 3C29A 1PVPA 1NZBA 3NKHA 2CRXA 1KBUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z19 A;  1M6X C;  2HOI A;  3UXU A;  1OUQ A;  1P4E C;  1PVR A;  1Q3U A;  1CRX A;  1PVQ A;  4A8E A;  1FLO A;  1XNS A;  4CRX A;  4DKS A;  1F44 A;  1Z1B A;  1MA7 A;  5C6K A;  5DCF A;  5DOR A;  3VCF A;  5CRX A;  1XO0 A;  2A3V A;  2HOF A;  3C28 A;  1P4E A;  1AE9 A;  1DRG A;  1M6X A;  1P7D A;  1Q3V A;  3MGV A;  3CRX A;  1AIH A;  1A0P A;  3C29 A;  1PVP A;  1NZB A;  3NKH A;  2CRX A;  1KBU A; 
#chains in the Genus database with same CATH topology
 2P2F A;  2HOI A;  4BBY A;  4LF8 C;  4LE5 A;  4ACO A;  4NXM C;  5H9U A;  2PRO A;  1XMO C;  3SO4 A;  2YWC A;  4RM3 A;  3AF6 A;  4HPV A;  2EGT A;  1USP A;  2NCL A;  4JI8 C;  3IEV A;  3JAM D;  2E0G A;  2P2J A;  3PES A;  4E0J A;  3GR1 A;  2XR1 A;  4MTN A;  2AYA A;  2JMP A;  5CZV A;  3S82 A;  3A9V A;  2VQF C;  2ONF A;  4RMN A;  4BC9 A;  1JOS A;  2D1S A;  4PUI A;  4DV0 C;  2BH1 X;  4B3T C;  2VQE C;  2D28 C;  2YX1 A;  1XNQ C;  3N2Q A;  3MGV A;  5AE3 A;  4IZ6 A;  3J80 D;  3I07 A;  1XNR C;  2YWB A;  4ZJZ A;  4IR7 A;  3I08 A;  3TR3 A;  3DHV A;  4E0P A;  5BST A;  5IWA C;  3PBK A;  4DR7 C;  3RV2 A;  1Z1B A;  1FJG C;  5CRX A;  4JI0 C;  5DOR A;  4F41 A;  3LNV A;  4DCT A;  2QVX X;  3UX3 A;  3GPC A;  2YCB A;  2Y4O A;  5ADZ A;  3LAX A;  2UUB C;  5FLX D;  4RM2 A;  4U5Y D;  1IB8 A;  5AE2 A;  1PVQ A;  4DV5 C;  4JI6 C;  4ISB A;  1T5D X;  4CRX A;  4E10 A;  4DV1 C;  4KTV A;  3LGX A;  3T1H C;  4RLQ A;  1AE9 A;  1O90 A;  3A9U A;  4D4I A;  4BC7 A;  4LF4 C;  5GTD A;  5KYV A;  1USP B;  2OPL A;  1PVP A;  3H2T A;  4DR6 C;  5A1I A;  1WCJ A;  4E0Y A;  3KXW A;  3IEU A;  1MXA A;  1KBU A;  5BUQ A;  4KTT A;  3J81 D;  2KDN A;  4PZP A;  1PG4 A;  3DAY A;  3IML A;  2UXB C;  2OO4 A;  1AMU A;  1N32 C;  3A25 A;  3CW8 X;  3R44 A;  3G7S A;  2HHH C;  2ZZN A;  4X64 C;  1AIH A;  1FUG A;  4OYC A;  1T5H X;  4JI5 C;  4GXQ A;  4E0G A;  1Z19 A;  4DCS A;  3ETC A;  5A1G A;  1XRB A;  4DWP A;  1Q3U A;  1ULT A;  1QM4 A;  4RVN A;  3N54 B;  1N2F A;  1IBK C;  3VCF A;  1XO0 A;  4ZLP A;  1HR0 C;  4DG9 A;  2Y27 A;  2D1R A;  4WS9 A;  3NPD A;  4TPS B;  3B7W A;  2UU9 C;  4JI1 C;  4NXN C;  3AF5 A;  5BSM A;  1NZB A;  2P20 A;  4RLF A;  2CY1 A;  1O92 A;  2Y4N A;  2QL8 A;  2PN2 A;  2P2B A;  1CRX A;  3TUF A;  3A26 A;  3K6R A;  2E8F A;  1KKG A;  4LFA C;  3L95 X;  5C6K A;  2M5O A;  2Z51 A;  4DV6 C;  4LFC C;  2JNV A;  1MXC A;  3LUS A;  1MXB A;  1UWD A;  1RY2 A;  4DV4 C;  1N33 C;  3CQ3 A;  4F43 A;  1ZB9 A;  2VSQ A;  1V60 A;  4JI7 C;  2DHM A;  3GR0 A;  4BSZ A;  3UXU A;  1V25 A;  1WH9 A;  4I9F A;  2ASB A;  3GKU A;  2E5L C;  3UZ0 A;  4ODJ A;  4DCU A;  1WF3 A;  3C28 A;  4YHH C;  4X65 C;  4PRO C;  1IBL C;  3VNS A;  1LCI A;  1MDF A;  1MD9 A;  1A0P A;  3E7X A;  2ZZM A;  4GKK C;  3EQ6 A;  1NYE A;  1VEH A;  3R9W A;  3PRO C;  2M5H A;  4L4Q A;  2D7V A;  3CQ1 A;  4JM1 A;  4A8E A;  3ETO A;  4DV3 C;  2CU6 A;  1XNS A;  3R9X A;  4DKS A;  4R1M A;  4GS5 A;  4B3S C;  5DCF A;  1IBM C;  2A3V A;  2P2Q A;  2HOF A;  4X66 C;  5T8S A;  4BCA A;  4JI3 C;  2HJG A;  1M6X A;  3UEB A;  4WV3 A;  3VNQ A;  1L2F A;  5BUR A;  2MMA B;  4DG8 A;  4GKJ C;  2UXD C;  4G1I A;  4YY3 C;  4EAT A;  4G37 A;  5LMN C;  4DV2 C;  1O9T A;  4LF7 C;  4GXR A;  4JV5 C;  3NYR A;  4XX2 A;  1F44 A;  4FTF A;  2KZF A;  3SQI A;  1YJ7 A;  3FCE A;  3RG2 A;  3O2E A;  2E8E A;  2MM9 A;  1BA3 A;  3E7W A;  1HH2 P;  2OBV A;  5JRH A;  4PUH A;  2P2M A;  3T1Y C;  4DR2 C;  1PG3 A;  1XRC A;  2ATW A;  5BSW A;  2V7B A;  4D56 A;  4E0Z A;  4B3R C;  5KYT A;  2OPL B;  1XHJ A;  5CZX A;  4G36 A;  2UUA C;  3CRX A;  1I94 C;  1ZB8 A;  2F4V C;  4I9G A;  3UOW A;  4JYA C;  1RG9 A;  1V26 A;  2WD9 A;  3DLP X;  5K8F A;  2CXC A;  5DV9 A;  1PVR A;  2WP0 C;  4R0M A;  5T8T A;  4L7I A;  4D4G A;  1LQL A;  1UKK A;  1N36 C;  1XMQ C;  3TQI A;  2E8C A;  2DPL A;  1MDB A;  1DRG A;  1P7D A;  1HNW C;  1Q3V A;  1P7L A;  4OX9 C;  1EGA A;  2V6E A;  2ZM6 C;  4DR4 C;  1M6X C;  4LF9 C;  5LMU C;  4FUQ A;  5KEI A;  3CW9 A;  4L2Z A;  1FLO A;  4LF6 C;  3EER A;  3CQ2 A;  3T79 A;  1XRA A;  4DUY C;  2QVY X;  4DR5 C;  5A2Q D;  4LFB C;  3UX2 A;  4RVO A;  1MKY A;  1J5E C;  1VLA A;  4NDN A;  3AY0 A;  4DCV A;  2QW0 X;  4R1L A;  4JI2 C;  2CRX A;  4OXI A;  5IFI A;  1PA4 A;  5BSR A;  3OTO C;  1XS3 A;  1P4E C;  5BSV A;  3A4I A;  4MH4 A;  1K0R A;  2D1Q A;  3C5E A;  1O93 A;  5K85 A;  1TH5 A;  3FCC A;  2P02 A;  4K0K C;  4NOZ A;  2DYJ A;  5BUS A;  2KZ0 A;  2E7G A;  4K0B A;  4DR1 C;  5BSU A;  2D1T A;  5A19 A;  3TDE A;  3L8C A;  1OUQ A;  5LCI A;  4D57 A;  4PUG A;  4AQY C;  1MA7 A;  4B3M C;  1HNZ C;  3CJE A;  3NI2 A;  2QVZ X;  3LNO A;  1PU1 A;  1P4E A;  1HNX C;  3NYQ A;  2UUC C;  5AE1 A;  2PT7 G;  4JI4 C;  4DV7 C;  4FUT A;  1N34 C;  5IT9 D;  4KHP C;  2MCQ A;  2BJO A;  4PHT A;  1QWI A;  2D27 A;  3IPL A;  4DR3 C;  4DUZ C;  4LF5 C;  1GPM A;  4X62 C;  1NY8 A;  2UXC C;  5BR8 C;  2VZE A;  3VNR A;  1ML8 A;  5E7Q A;  3C29 A;  3NKH A; 
#chains in the Genus database with same CATH homology
 1Z19 A;  1M6X C;  2HOI A;  3UXU A;  1OUQ A;  1P4E C;  1PVR A;  1Q3U A;  1CRX A;  1PVQ A;  4A8E A;  1FLO A;  1XNS A;  4CRX A;  4DKS A;  1F44 A;  1Z1B A;  1MA7 A;  5C6K A;  5DCF A;  5DOR A;  3VCF A;  5CRX A;  1XO0 A;  2A3V A;  2HOF A;  3C28 A;  1P4E A;  1AE9 A;  1DRG A;  1M6X A;  1P7D A;  1Q3V A;  3MGV A;  3CRX A;  1AIH A;  1A0P A;  3C29 A;  1PVP A;  1NZB A;  3NKH A;  2CRX A;  1KBU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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