1P4EA

Flpe w330f mutant-dna holliday junction complex
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
421
structure length
400
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein/recombination/dna
molecule keywords 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
publication title The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 122
structure length 400
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1p4eA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1p4eA01
3UXUA 1DRGA 1P4EC 1CRXA 5C6KA 1PVRA 1XO0A 1M6XA 3NKHA 3VCFA 1MA7A 1PVQA 4DKSA 2HOFA 3C29A 3MGVA 1PVPA 2HOIA 1P4EA 1AIHA 2A3VA 1Q3VA 3C28A 1A0PA 5CRXA 2CRXA 1XNSA 1KBUA 4CRXA 1F44A 1P7DA 5DORA 1AE9A 5DCFA 1OUQA 3CRXA 4A8EA 1NZBA 1Z19A 1M6XC 1FLOA 1Q3UA 1Z1BA
chains in the Genus database with same CATH superfamily
4X62C 3CQ1A 1ULTA 1MXBA 4DR5C 4K0BA 3ETOA 4RM2A 5LMUC 2Y27A 1PA4A 3A9UA 1Q3VA 3GR0A 4PHTA 5CZXA 4CRXA 2XR1A 4ZJZA 4WS9A 4PROC 3CQ3A 2OPLA 2KDNA 3CJEA 2QL8A 2UUBC 2NCLA 3I08A 3CQ2A 1ZB9A 1HNXC 4ODJA 4KHPC 2E0GA 1LCIA 2E8CA 3PBKA 1MDBA 3J80D 3C29A 4DR4C 3TDEA 1WF3A 2VSQA 5AE2A 1V26A 2CRXA 2EGTA 3LGXA 5FLXD 1XNSA 4R1MA 2ZZMA 2M5HA 1WH9A 2MCQA 5BUQA 3DHVA 4LF4C 3SO4A 3L95X 2DYJA 3IEVA 1VLAA 4JI4C 1N34C 3IPLA 2UXBC 4PUGA 1I94C 1IBMC 4ISBA 4RVOA 4JI8C 1N36C 2QVZX 5BSUA 3AF5A 1L2FA 1NY8A 2M5OA 4MTNA 1USPB 1QWIA 1JOSA 3A4IA 4A8EA 3UX2A 4LF5C 1FLOA 2HJGA 3T79A 1Q3UA 4OXIA 4OX9C 5AE1A 3CW9A 5A1IA 5C6KA 1HNZC 4E0GA 3GR1A 1V60A 4DKSA 3A9VA 1XMQC 3NPDA 4BBYA 5A1GA 1A0PA 4LFAC 4LFBC 5BSTA 5T8SA 1UWDA 4LE5A 2E8FA 5A2QD 1MDFA 5A19A 4JI1C 2UXCC 4LF8C 4F43A 1Z1BA 3UXUA 4DWPA 3KXWA 5KYVA 4OYCA 2PROA 1M6XA 1HH2P 4RMNA 1PU1A 1O9TA 1ML8A 2AYAA 3GPCA 1N32C 1GPMA 1QM4A 2QW0X 4DR1C 4NOZA 5IFIA 1USPA 5GTDA 4R0MA 5AE3A 3N54B 2KZFA 4FTFA 2HHHC 5IWAC 4JI2C 2KZ0A 4PUHA 5LMNC 1P4EC 2PN2A 4JV5C 5KEIA 1P7LA 3A25A 3NKHA 5K8FA 2D28C 3NI2A 4DV3C 4MH4A 4DR7C 4D56A 2P2MA 3R9XA 4L2ZA 3PROC 4D4GA 4DUYC 1NYEA 4DCUA 4DV4C 1BA3A 2E7GA 4HPVA 3UOWA 3VNRA 4B3TC 2Y4OA 4JI6C 5H9UA 1CRXA 5BSRA 1O93A 4WV3A 4JM1A 3O2EA 1PVQA 3AY0A 3TQIA 3N2QA 4DV1C 1PG3A 4ACOA 4E0YA 2OO4A 4TPSB 1N33C 2V6EA 1XRBA 5DORA 4E0PA 4DR2C 2BH1X 2QVXX 4AQYC 1HR0C 3SQIA 1DRGA 2P2FA 2Y4NA 4YY3C 5DV9A 1PVRA 2WD9A 5BSVA 5CZVA 3VNQA 2YWBA 3DAYA 1HNWC 5LCIA 2D1RA 3LAXA 1MD9A 1LQLA 1KBUA 2P02A 4DV2C 4R1LA 4XX2A 4I9GA 3UX3A 3K6RA 2UUAC 4IR7A 3B7WA 3ETCA 4LFCC 3UZ0A 2ASBA 2YX1A 3DLPX 3L8CA 1MXAA 4GXRA 3E7XA 1EGAA 3VCFA 1TH5A 2ONFA 4F41A 1XRAA 4D4IA 1XNQC 2CY1A 3EQ6A 4DG9A 1IBKC 4KTTA 2E8EA 3TUFA 1P7DA 1V25A 4D57A 3R9WA 1IB8A 1J5EC 4BC7A 1Z19A 2YWCA 3TR3A 4DUZC 1KKGA 2YCBA 5BSWA 4GXQA 2ATWA 4NXMC 4BCAA 4B3SC 4KTVA 4I9FA 1XMOC 2V7BA 3J81D 2BJOA 1O92A 4NDNA 1FUGA 1PG4A 4DV6C 3OTOC 3T1HC 2VQFC 4L4QA 4DCSA 2VQEC 4RVNA 4PUIA 2OPLB 2MMAB 1M6XC 2E5LC 3AF6A 1MA7A 1O90A 4PZPA 2D1SA 2HOFA 4LF6C 2HOIA 1P4EA 2CXCA 4FUTA 2UU9C 3C28A 4G1IA 5KYTA 1F44A 4BSZA 2D1QA 3JAMD 3A26A 4DG8A 4E10A 4X65C 4JI7C 3C5EA 1AMUA 5K85A 4RLFA 3MGVA 1PVPA 1FJGC 1WCJA 1IBLC 4G37A 4IZ6A 4JI0C 4DR3C 4K0KC 4LF9C 2P2JA 3T1YC 5JRHA 1T5HX 4RM3A 4DCVA 1XNRC 3G7SA 1UKKA 4NXNC 1XO0A 2MM9A 3IMLA 4BC9A 2JNVA 3I07A 1AIHA 3LNOA 4U5YD 4JYAC 4DV0C 1XHJA 3CW8X 4GKKC 2UXDC 4GKJC 5DCFA 1N2FA 2QVYX 2P20A 1MXCA 4ZLPA 3R44A 4G36A 4EATA 1RY2A 3FCEA 4LF7C 1XRCA 3LNVA 1ZB8A 2OBVA 3EERA 3FCCA 4GS5A 3IEUA 4B3MC 3E7WA 2P2QA 2CU6A 1RG9A 1AE9A 3NYQA 5BSMA 3CRXA 2ZZNA 3UEBA 4X64C 2UUCC 2PT7G 4DR6C 1MKYA 4X66C 2WP0C 1XS3A 3GKUA 2P2BA 1YJ7A 3PESA 4YHHC 4RLQA 1T5DX 5CRXA 2DHMA 4DV7C 4DCTA 3RG2A 5BURA 5IT9D 1VEHA 1OUQA 2VZEA 2F4VC 4E0JA 5E7QA 3H2TA 2DPLA 4JI3C 4FUQA 4JI5C 5T8TA 2D1TA 4E0ZA 3RV2A 5BUSA 2A3VA 5ADZA 2JMPA 3VNSA 3NYRA 1K0RA 3LUSA 2ZM6C 4DV5C 2D7VA 4L7IA 4B3RC 1NZBA 2Z51A 3S82A 5BR8C 2D27A
chains in the Genus database with same CATH topology
3UXUA 1DRGA 1P4EC 1CRXA 5C6KA 1PVRA 1XO0A 1M6XA 3NKHA 3VCFA 1MA7A 1PVQA 4DKSA 2HOFA 3C29A 3MGVA 1PVPA 2HOIA 1P4EA 1AIHA 2A3VA 1Q3VA 3C28A 1A0PA 5CRXA 2CRXA 1XNSA 1KBUA 4CRXA 1F44A 1P7DA 5DORA 1AE9A 5DCFA 1OUQA 3CRXA 4A8EA 1NZBA 1Z19A 1M6XC 1FLOA 1Q3UA 1Z1BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UXU A;  1DRG A;  1P4E C;  1CRX A;  5C6K A;  1PVR A;  1XO0 A;  1M6X A;  3NKH A;  3VCF A;  1MA7 A;  1PVQ A;  4DKS A;  2HOF A;  3C29 A;  3MGV A;  1PVP A;  2HOI A;  1P4E A;  1AIH A;  2A3V A;  1Q3V A;  3C28 A;  1A0P A;  5CRX A;  2CRX A;  1XNS A;  1KBU A;  4CRX A;  1F44 A;  1P7D A;  5DOR A;  1AE9 A;  5DCF A;  1OUQ A;  3CRX A;  4A8E A;  1NZB A;  1Z19 A;  1M6X C;  1FLO A;  1Q3U A;  1Z1B A; 
#chains in the Genus database with same CATH topology
 4X62 C;  3CQ1 A;  1ULT A;  1MXB A;  4DR5 C;  4K0B A;  3ETO A;  4RM2 A;  5LMU C;  2Y27 A;  1PA4 A;  3A9U A;  1Q3V A;  3GR0 A;  4PHT A;  5CZX A;  4CRX A;  2XR1 A;  4ZJZ A;  4WS9 A;  4PRO C;  3CQ3 A;  2OPL A;  2KDN A;  3CJE A;  2QL8 A;  2UUB C;  2NCL A;  3I08 A;  3CQ2 A;  1ZB9 A;  1HNX C;  4ODJ A;  4KHP C;  2E0G A;  1LCI A;  2E8C A;  3PBK A;  1MDB A;  3J80 D;  3C29 A;  4DR4 C;  3TDE A;  1WF3 A;  2VSQ A;  5AE2 A;  1V26 A;  2CRX A;  2EGT A;  3LGX A;  5FLX D;  1XNS A;  4R1M A;  2ZZM A;  2M5H A;  1WH9 A;  2MCQ A;  5BUQ A;  3DHV A;  4LF4 C;  3SO4 A;  3L95 X;  2DYJ A;  3IEV A;  1VLA A;  4JI4 C;  1N34 C;  3IPL A;  2UXB C;  4PUG A;  1I94 C;  1IBM C;  4ISB A;  4RVO A;  4JI8 C;  1N36 C;  2QVZ X;  5BSU A;  3AF5 A;  1L2F A;  1NY8 A;  2M5O A;  4MTN A;  1USP B;  1QWI A;  1JOS A;  3A4I A;  4A8E A;  3UX2 A;  4LF5 C;  1FLO A;  2HJG A;  3T79 A;  1Q3U A;  4OXI A;  4OX9 C;  5AE1 A;  3CW9 A;  5A1I A;  5C6K A;  1HNZ C;  4E0G A;  3GR1 A;  1V60 A;  4DKS A;  3A9V A;  1XMQ C;  3NPD A;  4BBY A;  5A1G A;  1A0P A;  4LFA C;  4LFB C;  5BST A;  5T8S A;  1UWD A;  4LE5 A;  2E8F A;  5A2Q D;  1MDF A;  5A19 A;  4JI1 C;  2UXC C;  4LF8 C;  4F43 A;  1Z1B A;  3UXU A;  4DWP A;  3KXW A;  5KYV A;  4OYC A;  2PRO A;  1M6X A;  1HH2 P;  4RMN A;  1PU1 A;  1O9T A;  1ML8 A;  2AYA A;  3GPC A;  1N32 C;  1GPM A;  1QM4 A;  2QW0 X;  4DR1 C;  4NOZ A;  5IFI A;  1USP A;  5GTD A;  4R0M A;  5AE3 A;  3N54 B;  2KZF A;  4FTF A;  2HHH C;  5IWA C;  4JI2 C;  2KZ0 A;  4PUH A;  5LMN C;  1P4E C;  2PN2 A;  4JV5 C;  5KEI A;  1P7L A;  3A25 A;  3NKH A;  5K8F A;  2D28 C;  3NI2 A;  4DV3 C;  4MH4 A;  4DR7 C;  4D56 A;  2P2M A;  3R9X A;  4L2Z A;  3PRO C;  4D4G A;  4DUY C;  1NYE A;  4DCU A;  4DV4 C;  1BA3 A;  2E7G A;  4HPV A;  3UOW A;  3VNR A;  4B3T C;  2Y4O A;  4JI6 C;  5H9U A;  1CRX A;  5BSR A;  1O93 A;  4WV3 A;  4JM1 A;  3O2E A;  1PVQ A;  3AY0 A;  3TQI A;  3N2Q A;  4DV1 C;  1PG3 A;  4ACO A;  4E0Y A;  2OO4 A;  4TPS B;  1N33 C;  2V6E A;  1XRB A;  5DOR A;  4E0P A;  4DR2 C;  2BH1 X;  2QVX X;  4AQY C;  1HR0 C;  3SQI A;  1DRG A;  2P2F A;  2Y4N A;  4YY3 C;  5DV9 A;  1PVR A;  2WD9 A;  5BSV A;  5CZV A;  3VNQ A;  2YWB A;  3DAY A;  1HNW C;  5LCI A;  2D1R A;  3LAX A;  1MD9 A;  1LQL A;  1KBU A;  2P02 A;  4DV2 C;  4R1L A;  4XX2 A;  4I9G A;  3UX3 A;  3K6R A;  2UUA C;  4IR7 A;  3B7W A;  3ETC A;  4LFC C;  3UZ0 A;  2ASB A;  2YX1 A;  3DLP X;  3L8C A;  1MXA A;  4GXR A;  3E7X A;  1EGA A;  3VCF A;  1TH5 A;  2ONF A;  4F41 A;  1XRA A;  4D4I A;  1XNQ C;  2CY1 A;  3EQ6 A;  4DG9 A;  1IBK C;  4KTT A;  2E8E A;  3TUF A;  1P7D A;  1V25 A;  4D57 A;  3R9W A;  1IB8 A;  1J5E C;  4BC7 A;  1Z19 A;  2YWC A;  3TR3 A;  4DUZ C;  1KKG A;  2YCB A;  5BSW A;  4GXQ A;  2ATW A;  4NXM C;  4BCA A;  4B3S C;  4KTV A;  4I9F A;  1XMO C;  2V7B A;  3J81 D;  2BJO A;  1O92 A;  4NDN A;  1FUG A;  1PG4 A;  4DV6 C;  3OTO C;  3T1H C;  2VQF C;  4L4Q A;  4DCS A;  2VQE C;  4RVN A;  4PUI A;  2OPL B;  2MMA B;  1M6X C;  2E5L C;  3AF6 A;  1MA7 A;  1O90 A;  4PZP A;  2D1S A;  2HOF A;  4LF6 C;  2HOI A;  1P4E A;  2CXC A;  4FUT A;  2UU9 C;  3C28 A;  4G1I A;  5KYT A;  1F44 A;  4BSZ A;  2D1Q A;  3JAM D;  3A26 A;  4DG8 A;  4E10 A;  4X65 C;  4JI7 C;  3C5E A;  1AMU A;  5K85 A;  4RLF A;  3MGV A;  1PVP A;  1FJG C;  1WCJ A;  1IBL C;  4G37 A;  4IZ6 A;  4JI0 C;  4DR3 C;  4K0K C;  4LF9 C;  2P2J A;  3T1Y C;  5JRH A;  1T5H X;  4RM3 A;  4DCV A;  1XNR C;  3G7S A;  1UKK A;  4NXN C;  1XO0 A;  2MM9 A;  3IML A;  4BC9 A;  2JNV A;  3I07 A;  1AIH A;  3LNO A;  4U5Y D;  4JYA C;  4DV0 C;  1XHJ A;  3CW8 X;  4GKK C;  2UXD C;  4GKJ C;  5DCF A;  1N2F A;  2QVY X;  2P20 A;  1MXC A;  4ZLP A;  3R44 A;  4G36 A;  4EAT A;  1RY2 A;  3FCE A;  4LF7 C;  1XRC A;  3LNV A;  1ZB8 A;  2OBV A;  3EER A;  3FCC A;  4GS5 A;  3IEU A;  4B3M C;  3E7W A;  2P2Q A;  2CU6 A;  1RG9 A;  1AE9 A;  3NYQ A;  5BSM A;  3CRX A;  2ZZN A;  3UEB A;  4X64 C;  2UUC C;  2PT7 G;  4DR6 C;  1MKY A;  4X66 C;  2WP0 C;  1XS3 A;  3GKU A;  2P2B A;  1YJ7 A;  3PES A;  4YHH C;  4RLQ A;  1T5D X;  5CRX A;  2DHM A;  4DV7 C;  4DCT A;  3RG2 A;  5BUR A;  5IT9 D;  1VEH A;  1OUQ A;  2VZE A;  2F4V C;  4E0J A;  5E7Q A;  3H2T A;  2DPL A;  4JI3 C;  4FUQ A;  4JI5 C;  5T8T A;  2D1T A;  4E0Z A;  3RV2 A;  5BUS A;  2A3V A;  5ADZ A;  2JMP A;  3VNS A;  3NYR A;  1K0R A;  3LUS A;  2ZM6 C;  4DV5 C;  2D7V A;  4L7I A;  4B3R C;  1NZB A;  2Z51 A;  3S82 A;  5BR8 C;  2D27 A; 
#chains in the Genus database with same CATH homology
 3UXU A;  1DRG A;  1P4E C;  1CRX A;  5C6K A;  1PVR A;  1XO0 A;  1M6X A;  3NKH A;  3VCF A;  1MA7 A;  1PVQ A;  4DKS A;  2HOF A;  3C29 A;  3MGV A;  1PVP A;  2HOI A;  1P4E A;  1AIH A;  2A3V A;  1Q3V A;  3C28 A;  1A0P A;  5CRX A;  2CRX A;  1XNS A;  1KBU A;  4CRX A;  1F44 A;  1P7D A;  5DOR A;  1AE9 A;  5DCF A;  1OUQ A;  3CRX A;  4A8E A;  1NZB A;  1Z19 A;  1M6X C;  1FLO A;  1Q3U A;  1Z1B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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