1P4EA

Flpe w330f mutant-dna holliday junction complex
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
421
structure length
400
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Dna binding protein/recombination/dna
molecule keywords 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
total genus 122
structure length 400
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1p4eA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1p4eA01
4DKSA 4CRXA 1NZBA 1KBUA 2A3VA 1CRXA 1A0PA 1Z1BA 2HOFA 3MGVA 1OUQA 5C6KA 3VCFA 1Z19A 1PVQA 1AE9A 4A8EA 5DCFA 1MA7A 1PVRA 1P4EC 1PVPA 1M6XA 1FLOA 3CRXA 2HOIA 1P4EA 3C28A 5CRXA 1M6XC 1XNSA 5DORA 1Q3UA 1Q3VA 1F44A 1AIHA 3C29A 1XO0A 3UXUA 1P7DA 3NKHA 1DRGA 2CRXA
chains in the Genus database with same CATH superfamily
3N54B 2JNVA 5AE1A 3E7WA 4MTNA 1XHJA 3T1HC 1XNQC 3JAMD 4A8EA 4DR7C 3DAYA 2EGTA 3I08A 1PVRA 3NI2A 2P2QA 1IBKC 2UUCC 1MXBA 3AF5A 4YHHC 4I9FA 4PHTA 1HH2P 3PROC 2D7VA 4JI8C 3A9VA 4R0MA 1A0PA 1MDFA 1USPB 4B3SC 3VNRA 3DHVA 5BSRA 4DR3C 3A26A 4RVOA 4BC7A 4JI0C 3K6RA 3FCCA 1AE9A 2QW0X 5ADZA 2E0GA 1MKYA 4PUIA 1HNWC 4JI2C 4L7IA 4DR6C 1Q3VA 4ACOA 3C29A 2WD9A 5BSUA 2UXBC 3R9WA 3T79A 2CXCA 4LF7C 4L4QA 4DV1C 2KDNA 1BA3A 4B3TC 4OX9C 1XRBA 3CQ2A 3IEUA 2OBVA 2ZM6C 2D1QA 4BSZA 2E8CA 5CZXA 5BR8C 3SO4A 4LF9C 2QVXX 2Y4OA 3NYQA 4DV7C 4E0YA 2OPLB 5CRXA 1V26A 2P2BA 1O93A 4RLFA 4LF5C 1PG3A 2VSQA 2DPLA 4LFCC 1N34C 3KXWA 1LQLA 4X64C 1GPMA 3UZ0A 5A1IA 4EATA 4KTTA 5BURA 2DYJA 5IT9D 2PN2A 5DCFA 5E7QA 2P2FA 4L2ZA 3CRXA 1M6XC 3TDEA 3IEVA 2PT7G 3LUSA 1T5DX 4JYAC 3UOWA 3J80D 4D4GA 3NPDA 1QWIA 1NZBA 2A3VA 4PZPA 4B3RC 1P7LA 2YX1A 2ASBA 2HHHC 1PVQA 1UWDA 2E8FA 3S82A 4JI3C 4FUQA 2M5OA 2P02A 4OYCA 5LCIA 2YWCA 1IBMC 3A25A 2ZZNA 1TH5A 3LGXA 4DUZC 5BSTA 4LFAC 2PROA 1ML8A 1LCIA 4I9GA 5BSWA 2XR1A 4GKKC 4NDNA 2CU6A 3CJEA 2UUBC 4KTVA 3I07A 1O9TA 3PBKA 3LNVA 1XNSA 4GXQA 2D28C 3TUFA 1IBLC 2QVZX 4IR7A 4ZJZA 4LE5A 1NY8A 1VEHA 4DKSA 1QM4A 1O90A 1NYEA 3TR3A 4DCTA 3MGVA 3PESA 5C6KA 1Z19A 4E0ZA 3FCEA 4OXIA 4FTFA 4RM2A 4DG8A 2D1RA 2YCBA 4U5YD 4PUGA 3GKUA 1N32C 4D57A 1J5EC 2BJOA 3OTOC 2E8EA 3T1YC 1UKKA 4JI6C 3CQ1A 2WP0C 5BUQA 1MA7A 1XRAA 4RMNA 2HOIA 4MH4A 3GPCA 4KHPC 4D4IA 1I94C 4ODJA 1XRCA 1WF3A 1XMQC 2E5LC 2P20A 3L95X 2Z51A 1Z1BA 3RV2A 3L8CA 1XS3A 3IPLA 4RLQA 2VQFC 5LMNC 1K0RA 3VNSA 3A9UA 5BSVA 2BH1X 4R1MA 4K0KC 4DV0C 5BSMA 4IZ6A 1WCJA 4PUHA 4D56A 4LF4C 3UXUA 1L2FA 3SQIA 1JOSA 4E0JA 4E10A 2AYAA 2MM9A 4DV3C 4BC9A 1N36C 1OUQA 4JI1C 3CW8X 2OO4A 4JI4C 1N33C 4WS9A 3EERA 4X62C 1HNZC 2F4VC 2UXCC 5H9UA 5FLXD 3VNQA 2NCLA 5BUSA 3G7SA 1O92A 5KYTA 4DCVA 3R44A 1AIHA 3NKHA 1PG4A 2CRXA 3DLPX 4BCAA 2Y27A 4DG9A 1HNXC 5AE3A 5K85A 1RG9A 1USPA 4DV2C 4GXRA 4DR5C 1XNRC 2HOFA 2KZ0A 4JI5C 3GR1A 1XMOC 4GS5A 3R9XA 4R1LA 3UX3A 5IWAC 1P4EC 1MDBA 2E7GA 1FLOA 4HPVA 3E7XA 2MCQA 3B7WA 4LFBC 2KZFA 1F44A 1V25A 5DV9A 2HJGA 2MMAB 2ZZMA 4JM1A 3AY0A 4AQYC 2P2MA 5T8SA 1ZB9A 3VCFA 2VZEA 1ZB8A 3H2TA 4DR4C 1IB8A 1PA4A 4RM3A 3AF6A 2UU9C 3N2QA 1P7DA 4RVNA 5GTDA 4DUYC 2VQEC 3O2EA 2M5HA 4FUTA 4ZLPA 1PU1A 4E0PA 5T8TA 1YJ7A 5KYVA 5K8FA 3UEBA 4E0GA 5JRHA 4DCUA 4LF8C 1M6XA 3C28A 4GKJC 4WV3A 2YWBA 1Q3UA 1RY2A 5AE2A 1AMUA 2UXDC 4DWPA 4F43A 4PROC 4X65C 3C5EA 2ATWA 1HR0C 2QVYX 2ONFA 3ETOA 1EGAA 2D1SA 2P2JA 1V60A 3TQIA 3LAXA 3RG2A 5LMUC 2JMPA 1FJGC 4F41A 1P4EA 4G37A 3UX2A 4DR2C 5DORA 1MD9A 4NOZA 4G36A 3CQ3A 2Y4NA 4DR1C 4NXNC 1FUGA 4K0BA 4CRXA 3J81D 1KBUA 3CW9A 4JV5C 1MXCA 1CRXA 5KEIA 2DHMA 4BBYA 1T5HX 4NXMC 2D1TA 1N2FA 3EQ6A 5A1GA 4YY3C 2CY1A 2V7BA 3LNOA 4XX2A 5CZVA 4LF6C 5IFIA 1KKGA 1PVPA 4X66C 4DV5C 3ETCA 4B3MC 2D27A 2OPLA 4JI7C 2UUAC 5A19A 4ISBA 1DRGA 1ULTA 3NYRA 3GR0A 4DV6C 3IMLA 1VLAA 3A4IA 2QL8A 4DCSA 5A2QD 4DV4C 1WH9A 1MXAA 2V6EA 1XO0A 4G1IA 4TPSB
chains in the Genus database with same CATH topology
4DKSA 4CRXA 1NZBA 1KBUA 2A3VA 1CRXA 1A0PA 1Z1BA 2HOFA 3MGVA 1OUQA 5C6KA 3VCFA 1Z19A 1PVQA 1AE9A 4A8EA 5DCFA 1MA7A 1PVRA 1P4EC 1PVPA 1M6XA 1FLOA 3CRXA 2HOIA 1P4EA 3C28A 5CRXA 1M6XC 1XNSA 5DORA 1Q3UA 1Q3VA 1F44A 1AIHA 3C29A 1XO0A 3UXUA 1P7DA 3NKHA 1DRGA 2CRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DKS A;  4CRX A;  1NZB A;  1KBU A;  2A3V A;  1CRX A;  1A0P A;  1Z1B A;  2HOF A;  3MGV A;  1OUQ A;  5C6K A;  3VCF A;  1Z19 A;  1PVQ A;  1AE9 A;  4A8E A;  5DCF A;  1MA7 A;  1PVR A;  1P4E C;  1PVP A;  1M6X A;  1FLO A;  3CRX A;  2HOI A;  1P4E A;  3C28 A;  5CRX A;  1M6X C;  1XNS A;  5DOR A;  1Q3U A;  1Q3V A;  1F44 A;  1AIH A;  3C29 A;  1XO0 A;  3UXU A;  1P7D A;  3NKH A;  1DRG A;  2CRX A; 
#chains in the Genus database with same CATH topology
 3N54 B;  2JNV A;  5AE1 A;  3E7W A;  4MTN A;  1XHJ A;  3T1H C;  1XNQ C;  3JAM D;  4A8E A;  4DR7 C;  3DAY A;  2EGT A;  3I08 A;  1PVR A;  3NI2 A;  2P2Q A;  1IBK C;  2UUC C;  1MXB A;  3AF5 A;  4YHH C;  4I9F A;  4PHT A;  1HH2 P;  3PRO C;  2D7V A;  4JI8 C;  3A9V A;  4R0M A;  1A0P A;  1MDF A;  1USP B;  4B3S C;  3VNR A;  3DHV A;  5BSR A;  4DR3 C;  3A26 A;  4RVO A;  4BC7 A;  4JI0 C;  3K6R A;  3FCC A;  1AE9 A;  2QW0 X;  5ADZ A;  2E0G A;  1MKY A;  4PUI A;  1HNW C;  4JI2 C;  4L7I A;  4DR6 C;  1Q3V A;  4ACO A;  3C29 A;  2WD9 A;  5BSU A;  2UXB C;  3R9W A;  3T79 A;  2CXC A;  4LF7 C;  4L4Q A;  4DV1 C;  2KDN A;  1BA3 A;  4B3T C;  4OX9 C;  1XRB A;  3CQ2 A;  3IEU A;  2OBV A;  2ZM6 C;  2D1Q A;  4BSZ A;  2E8C A;  5CZX A;  5BR8 C;  3SO4 A;  4LF9 C;  2QVX X;  2Y4O A;  3NYQ A;  4DV7 C;  4E0Y A;  2OPL B;  5CRX A;  1V26 A;  2P2B A;  1O93 A;  4RLF A;  4LF5 C;  1PG3 A;  2VSQ A;  2DPL A;  4LFC C;  1N34 C;  3KXW A;  1LQL A;  4X64 C;  1GPM A;  3UZ0 A;  5A1I A;  4EAT A;  4KTT A;  5BUR A;  2DYJ A;  5IT9 D;  2PN2 A;  5DCF A;  5E7Q A;  2P2F A;  4L2Z A;  3CRX A;  1M6X C;  3TDE A;  3IEV A;  2PT7 G;  3LUS A;  1T5D X;  4JYA C;  3UOW A;  3J80 D;  4D4G A;  3NPD A;  1QWI A;  1NZB A;  2A3V A;  4PZP A;  4B3R C;  1P7L A;  2YX1 A;  2ASB A;  2HHH C;  1PVQ A;  1UWD A;  2E8F A;  3S82 A;  4JI3 C;  4FUQ A;  2M5O A;  2P02 A;  4OYC A;  5LCI A;  2YWC A;  1IBM C;  3A25 A;  2ZZN A;  1TH5 A;  3LGX A;  4DUZ C;  5BST A;  4LFA C;  2PRO A;  1ML8 A;  1LCI A;  4I9G A;  5BSW A;  2XR1 A;  4GKK C;  4NDN A;  2CU6 A;  3CJE A;  2UUB C;  4KTV A;  3I07 A;  1O9T A;  3PBK A;  3LNV A;  1XNS A;  4GXQ A;  2D28 C;  3TUF A;  1IBL C;  2QVZ X;  4IR7 A;  4ZJZ A;  4LE5 A;  1NY8 A;  1VEH A;  4DKS A;  1QM4 A;  1O90 A;  1NYE A;  3TR3 A;  4DCT A;  3MGV A;  3PES A;  5C6K A;  1Z19 A;  4E0Z A;  3FCE A;  4OXI A;  4FTF A;  4RM2 A;  4DG8 A;  2D1R A;  2YCB A;  4U5Y D;  4PUG A;  3GKU A;  1N32 C;  4D57 A;  1J5E C;  2BJO A;  3OTO C;  2E8E A;  3T1Y C;  1UKK A;  4JI6 C;  3CQ1 A;  2WP0 C;  5BUQ A;  1MA7 A;  1XRA A;  4RMN A;  2HOI A;  4MH4 A;  3GPC A;  4KHP C;  4D4I A;  1I94 C;  4ODJ A;  1XRC A;  1WF3 A;  1XMQ C;  2E5L C;  2P20 A;  3L95 X;  2Z51 A;  1Z1B A;  3RV2 A;  3L8C A;  1XS3 A;  3IPL A;  4RLQ A;  2VQF C;  5LMN C;  1K0R A;  3VNS A;  3A9U A;  5BSV A;  2BH1 X;  4R1M A;  4K0K C;  4DV0 C;  5BSM A;  4IZ6 A;  1WCJ A;  4PUH A;  4D56 A;  4LF4 C;  3UXU A;  1L2F A;  3SQI A;  1JOS A;  4E0J A;  4E10 A;  2AYA A;  2MM9 A;  4DV3 C;  4BC9 A;  1N36 C;  1OUQ A;  4JI1 C;  3CW8 X;  2OO4 A;  4JI4 C;  1N33 C;  4WS9 A;  3EER A;  4X62 C;  1HNZ C;  2F4V C;  2UXC C;  5H9U A;  5FLX D;  3VNQ A;  2NCL A;  5BUS A;  3G7S A;  1O92 A;  5KYT A;  4DCV A;  3R44 A;  1AIH A;  3NKH A;  1PG4 A;  2CRX A;  3DLP X;  4BCA A;  2Y27 A;  4DG9 A;  1HNX C;  5AE3 A;  5K85 A;  1RG9 A;  1USP A;  4DV2 C;  4GXR A;  4DR5 C;  1XNR C;  2HOF A;  2KZ0 A;  4JI5 C;  3GR1 A;  1XMO C;  4GS5 A;  3R9X A;  4R1L A;  3UX3 A;  5IWA C;  1P4E C;  1MDB A;  2E7G A;  1FLO A;  4HPV A;  3E7X A;  2MCQ A;  3B7W A;  4LFB C;  2KZF A;  1F44 A;  1V25 A;  5DV9 A;  2HJG A;  2MMA B;  2ZZM A;  4JM1 A;  3AY0 A;  4AQY C;  2P2M A;  5T8S A;  1ZB9 A;  3VCF A;  2VZE A;  1ZB8 A;  3H2T A;  4DR4 C;  1IB8 A;  1PA4 A;  4RM3 A;  3AF6 A;  2UU9 C;  3N2Q A;  1P7D A;  4RVN A;  5GTD A;  4DUY C;  2VQE C;  3O2E A;  2M5H A;  4FUT A;  4ZLP A;  1PU1 A;  4E0P A;  5T8T A;  1YJ7 A;  5KYV A;  5K8F A;  3UEB A;  4E0G A;  5JRH A;  4DCU A;  4LF8 C;  1M6X A;  3C28 A;  4GKJ C;  4WV3 A;  2YWB A;  1Q3U A;  1RY2 A;  5AE2 A;  1AMU A;  2UXD C;  4DWP A;  4F43 A;  4PRO C;  4X65 C;  3C5E A;  2ATW A;  1HR0 C;  2QVY X;  2ONF A;  3ETO A;  1EGA A;  2D1S A;  2P2J A;  1V60 A;  3TQI A;  3LAX A;  3RG2 A;  5LMU C;  2JMP A;  1FJG C;  4F41 A;  1P4E A;  4G37 A;  3UX2 A;  4DR2 C;  5DOR A;  1MD9 A;  4NOZ A;  4G36 A;  3CQ3 A;  2Y4N A;  4DR1 C;  4NXN C;  1FUG A;  4K0B A;  4CRX A;  3J81 D;  1KBU A;  3CW9 A;  4JV5 C;  1MXC A;  1CRX A;  5KEI A;  2DHM A;  4BBY A;  1T5H X;  4NXM C;  2D1T A;  1N2F A;  3EQ6 A;  5A1G A;  4YY3 C;  2CY1 A;  2V7B A;  3LNO A;  4XX2 A;  5CZV A;  4LF6 C;  5IFI A;  1KKG A;  1PVP A;  4X66 C;  4DV5 C;  3ETC A;  4B3M C;  2D27 A;  2OPL A;  4JI7 C;  2UUA C;  5A19 A;  4ISB A;  1DRG A;  1ULT A;  3NYR A;  3GR0 A;  4DV6 C;  3IML A;  1VLA A;  3A4I A;  2QL8 A;  4DCS A;  5A2Q D;  4DV4 C;  1WH9 A;  1MXA A;  2V6E A;  1XO0 A;  4G1I A;  4TPS B; 
#chains in the Genus database with same CATH homology
 4DKS A;  4CRX A;  1NZB A;  1KBU A;  2A3V A;  1CRX A;  1A0P A;  1Z1B A;  2HOF A;  3MGV A;  1OUQ A;  5C6K A;  3VCF A;  1Z19 A;  1PVQ A;  1AE9 A;  4A8E A;  5DCF A;  1MA7 A;  1PVR A;  1P4E C;  1PVP A;  1M6X A;  1FLO A;  3CRX A;  2HOI A;  1P4E A;  3C28 A;  5CRX A;  1M6X C;  1XNS A;  5DOR A;  1Q3U A;  1Q3V A;  1F44 A;  1AIH A;  3C29 A;  1XO0 A;  3UXU A;  1P7D A;  3NKH A;  1DRG A;  2CRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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