1P4EA

Flpe w330f mutant-dna holliday junction complex
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
421
structure length
400
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
publication title The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Dna binding protein/recombination/dna
total genus 122
structure length 400
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1p4eA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1p4eA01
4DKSA 1A0PA 1Z1BA 5DCFA 3C28A 1P4EA 1KBUA 1AE9A 3NKHA 3VCFA 1XO0A 1F44A 1PVRA 1M6XC 3MGVA 2A3VA 1PVQA 3CRXA 1DRGA 2HOIA 4CRXA 1MA7A 1Z19A 1M6XA 5DORA 4A8EA 1P7DA 2CRXA 1OUQA 3UXUA 1AIHA 1XNSA 5CRXA 1Q3VA 1NZBA 1CRXA 2HOFA 5C6KA 1Q3UA 3C29A 1P4EC 1FLOA 1PVPA
chains in the Genus database with same CATH superfamily
5AE1A 4DV6C 4KTTA 4E0YA 4GXQA 4DCVA 4KHPC 1DRGA 4PZPA 2QW0X 3UZ0A 1O92A 5CZXA 4D56A 4YHHC 4LF8C 2DPLA 2UUAC 3AF5A 4X62C 4WS9A 3IEVA 3SO4A 3TUFA 4E0ZA 4DCUA 2V7BA 2D1QA 3PBKA 2ONFA 1KBUA 1PG4A 2Z51A 1IB8A 4B3TC 4F43A 2YWCA 1USPA 1N32C 3I08A 3E7WA 3GPCA 3NYQA 3GKUA 2P2BA 2QVYX 4D4IA 5BUSA 5DV9A 3TQIA 2P2QA 4GXRA 4E0PA 1XRAA 1ZB8A 1WF3A 4DR1C 4LFCC 1FJGC 2VQFC 1USPB 2OBVA 4DR7C 2JMPA 1UWDA 4K0BA 3MGVA 4FUTA 5GTDA 3CQ3A 4K0KC 4RLFA 4DCSA 4JI4C 3CQ1A 4RLQA 5IFIA 1MXBA 2PT7G 5C6KA 4X66C 5BSVA 2NCLA 1FLOA 4GKKC 5JRHA 1A0PA 5ADZA 1HH2P 3DHVA 1AE9A 1ZB9A 4WV3A 4RMNA 4OXIA 5CZVA 4MTNA 4NDNA 3CRXA 3VNRA 1MDBA 2CY1A 2XR1A 5FLXD 4AQYC 1KKGA 1OUQA 2P20A 2VZEA 4E10A 3R9WA 1IBLC 2HOFA 3LUSA 4DV1C 4HPVA 1LQLA 5KEIA 2KZFA 1J5EC 4DR5C 3CJEA 4E0JA 3H2TA 2UU9C 3AF6A 4JI2C 1T5DX 4R0MA 2V6EA 1HR0C 4DR2C 1XHJA 1ULTA 3JAMD 3LNOA 3T1YC 3L8CA 4RM3A 3C29A 3A25A 4EATA 2WP0C 2OO4A 4DG8A 2P02A 3N54B 4G36A 4DV0C 4PUIA 1F44A 1V26A 2ATWA 4I9FA 4B3SC 5BSTA 4RM2A 2A3VA 5AE3A 4BSZA 2D28C 2QVZX 4XX2A 2PN2A 4OX9C 4LF6C 1HNXC 1I94C 4JI7C 3TDEA 1Q3UA 1XS3A 1N36C 3SQIA 3UOWA 1JOSA 1RG9A 4IR7A 5BR8C 3A26A 5E7QA 5T8SA 1XNQC 2HJGA 4YY3C 5A1GA 2D1SA 2EGTA 2HOIA 4CRXA 1XMOC 2E5LC 5BSWA 2CRXA 4LF5C 4DG9A 2D1RA 1PG3A 3RV2A 1XNSA 1MDFA 4JI0C 4FTFA 4LF7C 4X64C 1O93A 3A4IA 1P7DA 4RVNA 5BUQA 1HNZC 3N2QA 4ISBA 2E0GA 3DAYA 4NXNC 1WCJA 4D57A 4GS5A 3IPLA 2MM9A 5KYVA 3IMLA 4B3MC 4FUQA 3OTOC 4DWPA 1QWIA 4RVOA 1UKKA 2BH1X 3EQ6A 4LF9C 2KZ0A 2AYAA 1PU1A 4U5YD 2E8EA 5DCFA 5IWAC 1XMQC 3VCFA 3CW9A 2DYJA 2VQEC 3G7SA 1Z19A 2D7VA 3GR1A 2ASBA 4DCTA 3K6RA 3TR3A 5IT9D 1XRBA 3NYRA 2P2FA 1MKYA 1RY2A 1P4EC 4DV7C 3FCCA 4JI8C 1FUGA 4DKSA 2P2MA 4BC7A 3E7XA 4JI3C 4NXMC 3UX3A 4NOZA 4L7IA 3IEUA 4BCAA 3CQ2A 2ZM6C 1O90A 3LAXA 1PVQA 4G37A 4LF4C 1V25A 5DORA 3S82A 5K8FA 5LCIA 4LE5A 3UXUA 4ACOA 1AIHA 2UXCC 2E8CA 4ZJZA 3J81D 4G1IA 4E0GA 4LFAC 3EERA 1QM4A 2YX1A 3A9VA 2Y27A 3O2EA 3LGXA 4KTVA 3RG2A 4OYCA 5H9UA 3UEBA 4B3RC 5A2QD 4GKJC 3C5EA 2YWBA 5AE2A 2KDNA 1ML8A 3T79A 2YCBA 1TH5A 3FCEA 1P7LA 3DLPX 1Z1BA 1P4EA 3C28A 4DUZC 1WH9A 2DHMA 3ETCA 5BSMA 1N2FA 1EGAA 1AMUA 3PESA 2F4VC 2Y4OA 5BSUA 2E8FA 5CRXA 2ZZMA 4DR6C 1N34C 1IBKC 2UXDC 1MXAA 5LMNC 3UX2A 1MXCA 3L95X 1N33C 4IZ6A 1M6XC 4JI6C 3LNVA 3KXWA 4DV3C 1MA7A 3VNQA 3R9XA 4BBYA 2QL8A 2MCQA 3B7WA 4PHTA 1XNRC 2ZZNA 1V60A 1K0RA 1Q3VA 4R1LA 1CRXA 4DUYC 4JV5C 1HNWC 4PUGA 1PVPA 2UUCC 5BSRA 4JI1C 3T1HC 2UXBC 1PVRA 1PA4A 3AY0A 1GPMA 2QVXX 2D27A 4TPSB 4DV5C 3NI2A 3GR0A 1IBMC 3CW8X 4MH4A 1BA3A 4L4QA 4LFBC 3J80D 1LCIA 4R1MA 1O9TA 4I9GA 5LMUC 2CXCA 2VSQA 5A1IA 2CU6A 2OPLA 2M5OA 5A19A 4JM1A 4L2ZA 1XRCA 4PROC 3R44A 3NPDA 1M6XA 1T5HX 4JYAC 1NYEA 5KYTA 3I07A 4ZLPA 3VNSA 2WD9A 1NZBA 1YJ7A 2OPLB 3PROC 4BC9A 2D1TA 4F41A 5K85A 3NKHA 1XO0A 5T8TA 1L2FA 2BJOA 4D4GA 2HHHC 4DR4C 1VLAA 4ODJA 4DV2C 3A9UA 4DV4C 2Y4NA 4A8EA 2M5HA 3ETOA 4X65C 1NY8A 2E7GA 2P2JA 4DR3C 2UUBC 5BURA 1VEHA 4JI5C 2MMAB 1MD9A 2PROA 2JNVA 4PUHA
chains in the Genus database with same CATH topology
4DKSA 1A0PA 1Z1BA 5DCFA 3C28A 1P4EA 1KBUA 1AE9A 3NKHA 3VCFA 1XO0A 1F44A 1PVRA 1M6XC 3MGVA 2A3VA 1PVQA 3CRXA 1DRGA 2HOIA 4CRXA 1MA7A 1Z19A 1M6XA 5DORA 4A8EA 1P7DA 2CRXA 1OUQA 3UXUA 1AIHA 1XNSA 5CRXA 1Q3VA 1NZBA 1CRXA 2HOFA 5C6KA 1Q3UA 3C29A 1P4EC 1FLOA 1PVPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DKS A;  1A0P A;  1Z1B A;  5DCF A;  3C28 A;  1P4E A;  1KBU A;  1AE9 A;  3NKH A;  3VCF A;  1XO0 A;  1F44 A;  1PVR A;  1M6X C;  3MGV A;  2A3V A;  1PVQ A;  3CRX A;  1DRG A;  2HOI A;  4CRX A;  1MA7 A;  1Z19 A;  1M6X A;  5DOR A;  4A8E A;  1P7D A;  2CRX A;  1OUQ A;  3UXU A;  1AIH A;  1XNS A;  5CRX A;  1Q3V A;  1NZB A;  1CRX A;  2HOF A;  5C6K A;  1Q3U A;  3C29 A;  1P4E C;  1FLO A;  1PVP A; 
#chains in the Genus database with same CATH topology
 5AE1 A;  4DV6 C;  4KTT A;  4E0Y A;  4GXQ A;  4DCV A;  4KHP C;  1DRG A;  4PZP A;  2QW0 X;  3UZ0 A;  1O92 A;  5CZX A;  4D56 A;  4YHH C;  4LF8 C;  2DPL A;  2UUA C;  3AF5 A;  4X62 C;  4WS9 A;  3IEV A;  3SO4 A;  3TUF A;  4E0Z A;  4DCU A;  2V7B A;  2D1Q A;  3PBK A;  2ONF A;  1KBU A;  1PG4 A;  2Z51 A;  1IB8 A;  4B3T C;  4F43 A;  2YWC A;  1USP A;  1N32 C;  3I08 A;  3E7W A;  3GPC A;  3NYQ A;  3GKU A;  2P2B A;  2QVY X;  4D4I A;  5BUS A;  5DV9 A;  3TQI A;  2P2Q A;  4GXR A;  4E0P A;  1XRA A;  1ZB8 A;  1WF3 A;  4DR1 C;  4LFC C;  1FJG C;  2VQF C;  1USP B;  2OBV A;  4DR7 C;  2JMP A;  1UWD A;  4K0B A;  3MGV A;  4FUT A;  5GTD A;  3CQ3 A;  4K0K C;  4RLF A;  4DCS A;  4JI4 C;  3CQ1 A;  4RLQ A;  5IFI A;  1MXB A;  2PT7 G;  5C6K A;  4X66 C;  5BSV A;  2NCL A;  1FLO A;  4GKK C;  5JRH A;  1A0P A;  5ADZ A;  1HH2 P;  3DHV A;  1AE9 A;  1ZB9 A;  4WV3 A;  4RMN A;  4OXI A;  5CZV A;  4MTN A;  4NDN A;  3CRX A;  3VNR A;  1MDB A;  2CY1 A;  2XR1 A;  5FLX D;  4AQY C;  1KKG A;  1OUQ A;  2P20 A;  2VZE A;  4E10 A;  3R9W A;  1IBL C;  2HOF A;  3LUS A;  4DV1 C;  4HPV A;  1LQL A;  5KEI A;  2KZF A;  1J5E C;  4DR5 C;  3CJE A;  4E0J A;  3H2T A;  2UU9 C;  3AF6 A;  4JI2 C;  1T5D X;  4R0M A;  2V6E A;  1HR0 C;  4DR2 C;  1XHJ A;  1ULT A;  3JAM D;  3LNO A;  3T1Y C;  3L8C A;  4RM3 A;  3C29 A;  3A25 A;  4EAT A;  2WP0 C;  2OO4 A;  4DG8 A;  2P02 A;  3N54 B;  4G36 A;  4DV0 C;  4PUI A;  1F44 A;  1V26 A;  2ATW A;  4I9F A;  4B3S C;  5BST A;  4RM2 A;  2A3V A;  5AE3 A;  4BSZ A;  2D28 C;  2QVZ X;  4XX2 A;  2PN2 A;  4OX9 C;  4LF6 C;  1HNX C;  1I94 C;  4JI7 C;  3TDE A;  1Q3U A;  1XS3 A;  1N36 C;  3SQI A;  3UOW A;  1JOS A;  1RG9 A;  4IR7 A;  5BR8 C;  3A26 A;  5E7Q A;  5T8S A;  1XNQ C;  2HJG A;  4YY3 C;  5A1G A;  2D1S A;  2EGT A;  2HOI A;  4CRX A;  1XMO C;  2E5L C;  5BSW A;  2CRX A;  4LF5 C;  4DG9 A;  2D1R A;  1PG3 A;  3RV2 A;  1XNS A;  1MDF A;  4JI0 C;  4FTF A;  4LF7 C;  4X64 C;  1O93 A;  3A4I A;  1P7D A;  4RVN A;  5BUQ A;  1HNZ C;  3N2Q A;  4ISB A;  2E0G A;  3DAY A;  4NXN C;  1WCJ A;  4D57 A;  4GS5 A;  3IPL A;  2MM9 A;  5KYV A;  3IML A;  4B3M C;  4FUQ A;  3OTO C;  4DWP A;  1QWI A;  4RVO A;  1UKK A;  2BH1 X;  3EQ6 A;  4LF9 C;  2KZ0 A;  2AYA A;  1PU1 A;  4U5Y D;  2E8E A;  5DCF A;  5IWA C;  1XMQ C;  3VCF A;  3CW9 A;  2DYJ A;  2VQE C;  3G7S A;  1Z19 A;  2D7V A;  3GR1 A;  2ASB A;  4DCT A;  3K6R A;  3TR3 A;  5IT9 D;  1XRB A;  3NYR A;  2P2F A;  1MKY A;  1RY2 A;  1P4E C;  4DV7 C;  3FCC A;  4JI8 C;  1FUG A;  4DKS A;  2P2M A;  4BC7 A;  3E7X A;  4JI3 C;  4NXM C;  3UX3 A;  4NOZ A;  4L7I A;  3IEU A;  4BCA A;  3CQ2 A;  2ZM6 C;  1O90 A;  3LAX A;  1PVQ A;  4G37 A;  4LF4 C;  1V25 A;  5DOR A;  3S82 A;  5K8F A;  5LCI A;  4LE5 A;  3UXU A;  4ACO A;  1AIH A;  2UXC C;  2E8C A;  4ZJZ A;  3J81 D;  4G1I A;  4E0G A;  4LFA C;  3EER A;  1QM4 A;  2YX1 A;  3A9V A;  2Y27 A;  3O2E A;  3LGX A;  4KTV A;  3RG2 A;  4OYC A;  5H9U A;  3UEB A;  4B3R C;  5A2Q D;  4GKJ C;  3C5E A;  2YWB A;  5AE2 A;  2KDN A;  1ML8 A;  3T79 A;  2YCB A;  1TH5 A;  3FCE A;  1P7L A;  3DLP X;  1Z1B A;  1P4E A;  3C28 A;  4DUZ C;  1WH9 A;  2DHM A;  3ETC A;  5BSM A;  1N2F A;  1EGA A;  1AMU A;  3PES A;  2F4V C;  2Y4O A;  5BSU A;  2E8F A;  5CRX A;  2ZZM A;  4DR6 C;  1N34 C;  1IBK C;  2UXD C;  1MXA A;  5LMN C;  3UX2 A;  1MXC A;  3L95 X;  1N33 C;  4IZ6 A;  1M6X C;  4JI6 C;  3LNV A;  3KXW A;  4DV3 C;  1MA7 A;  3VNQ A;  3R9X A;  4BBY A;  2QL8 A;  2MCQ A;  3B7W A;  4PHT A;  1XNR C;  2ZZN A;  1V60 A;  1K0R A;  1Q3V A;  4R1L A;  1CRX A;  4DUY C;  4JV5 C;  1HNW C;  4PUG A;  1PVP A;  2UUC C;  5BSR A;  4JI1 C;  3T1H C;  2UXB C;  1PVR A;  1PA4 A;  3AY0 A;  1GPM A;  2QVX X;  2D27 A;  4TPS B;  4DV5 C;  3NI2 A;  3GR0 A;  1IBM C;  3CW8 X;  4MH4 A;  1BA3 A;  4L4Q A;  4LFB C;  3J80 D;  1LCI A;  4R1M A;  1O9T A;  4I9G A;  5LMU C;  2CXC A;  2VSQ A;  5A1I A;  2CU6 A;  2OPL A;  2M5O A;  5A19 A;  4JM1 A;  4L2Z A;  1XRC A;  4PRO C;  3R44 A;  3NPD A;  1M6X A;  1T5H X;  4JYA C;  1NYE A;  5KYT A;  3I07 A;  4ZLP A;  3VNS A;  2WD9 A;  1NZB A;  1YJ7 A;  2OPL B;  3PRO C;  4BC9 A;  2D1T A;  4F41 A;  5K85 A;  3NKH A;  1XO0 A;  5T8T A;  1L2F A;  2BJO A;  4D4G A;  2HHH C;  4DR4 C;  1VLA A;  4ODJ A;  4DV2 C;  3A9U A;  4DV4 C;  2Y4N A;  4A8E A;  2M5H A;  3ETO A;  4X65 C;  1NY8 A;  2E7G A;  2P2J A;  4DR3 C;  2UUB C;  5BUR A;  1VEH A;  4JI5 C;  2MMA B;  1MD9 A;  2PRO A;  2JNV A;  4PUH A; 
#chains in the Genus database with same CATH homology
 4DKS A;  1A0P A;  1Z1B A;  5DCF A;  3C28 A;  1P4E A;  1KBU A;  1AE9 A;  3NKH A;  3VCF A;  1XO0 A;  1F44 A;  1PVR A;  1M6X C;  3MGV A;  2A3V A;  1PVQ A;  3CRX A;  1DRG A;  2HOI A;  4CRX A;  1MA7 A;  1Z19 A;  1M6X A;  5DOR A;  4A8E A;  1P7D A;  2CRX A;  1OUQ A;  3UXU A;  1AIH A;  1XNS A;  5CRX A;  1Q3V A;  1NZB A;  1CRX A;  2HOF A;  5C6K A;  1Q3U A;  3C29 A;  1P4E C;  1FLO A;  1PVP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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