1P4EA

Flpe w330f mutant-dna holliday junction complex
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
421
structure length
400
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGQSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNFSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords 5'-D(*TP*AP*AP*GP*TP*TP*CP*CP*TP*AP*TP*TP*C)-3'
publication title The role of the conserved Trp330 in Flp-mediated recombination. Functional and structural analysis
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Dna binding protein/recombination/dna
total genus 122
structure length 400
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1p4eA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1p4eA01
1NZBA 5CRXA 1F44A 2A3VA 1Q3UA 3VCFA 1MA7A 2HOFA 1P4EA 5DORA 4DKSA 1AIHA 3C28A 3NKHA 1KBUA 4CRXA 3CRXA 4A8EA 1P4EC 1PVRA 5DCFA 1A0PA 3C29A 1FLOA 2HOIA 1XNSA 1Z19A 3UXUA 1XO0A 1M6XA 1DRGA 1OUQA 5C6KA 1Z1BA 1AE9A 1PVPA 1CRXA 1M6XC 2CRXA 1P7DA 1Q3VA 1PVQA 3MGVA
chains in the Genus database with same CATH superfamily
2M5HA 2KDNA 3IEUA 4D4IA 3O2EA 3N54B 1MA7A 1O93A 1N33C 2ZZNA 2E8FA 4OYCA 2YX1A 3LUSA 2D1SA 3EERA 4K0KC 5KYVA 4E0ZA 4ZJZA 1VEHA 4DR4C 4YY3C 5LMUC 2P02A 4DV1C 4NXNC 3CJEA 4JYAC 1RG9A 2QW0X 5ADZA 3E7WA 2AYAA 4DCSA 2EGTA 4X65C 3A25A 2P2BA 2ASBA 5DORA 4R1LA 4DG8A 1P4EC 1MD9A 1PVRA 2D1TA 4GKJC 1MKYA 1DRGA 3TR3A 4B3RC 2P2MA 4DV3C 5BUSA 2OO4A 3IPLA 1UKKA 1YJ7A 4KTVA 4PHTA 3UOWA 4DR5C 1MXCA 2HOFA 2ONFA 4PZPA 4LF5C 4R1MA 1MXAA 4F43A 4DV4C 4IR7A 4BBYA 1HR0C 1HNWC 4FTFA 5A19A 1PA4A 4ZLPA 1XHJA 1AE9A 3DHVA 1N34C 3GPCA 4I9GA 1XRCA 5BURA 2DYJA 3NYQA 1P7DA 4X66C 1PVQA 1AMUA 3B7WA 5T8SA 4RLFA 1Q3UA 2VSQA 4NDNA 2KZFA 3L95X 4X62C 5AE3A 1XRAA 4X64C 4D56A 2DHMA 4E0GA 2E0GA 1CRXA 4I9FA 1P7LA 3OTOC 1VLAA 2UXBC 4JI5C 5BR8C 1IBLC 3G7SA 5BSWA 4AQYC 4CRXA 3A26A 4PUIA 4L4QA 1V60A 5DCFA 1WH9A 3IEVA 1O9TA 2D7VA 2Y27A 4MH4A 1RY2A 4DR2C 3C5EA 4R0MA 1WF3A 5A2QD 4G37A 1MDFA 2ZM6C 4YHHC 4RMNA 2P20A 4GXRA 1IBKC 4B3MC 5CRXA 3LAXA 4FUTA 4FUQA 3VNSA 4OXIA 1NY8A 4PUHA 5A1GA 4BCAA 4ACOA 1A0PA 1HNZC 2MMAB 1LCIA 2PN2A 3AF6A 4JM1A 4LF9C 4E0JA 3RV2A 2JMPA 2UXCC 4JI7C 1ML8A 4MTNA 5GTDA 4RVOA 2PROA 3SO4A 4LF8C 4LFBC 2MM9A 5IFIA 5CZVA 2D27A 3CQ1A 4EATA 4RM3A 3AY0A 5K8FA 4LFCC 2XR1A 2HJGA 4DCVA 2UUBC 2UU9C 1L2FA 4LF7C 2UUAC 1LQLA 1PVPA 1N36C 1PG3A 2OPLA 5BSTA 1XMQC 5DV9A 2DPLA 4JI1C 4DG9A 3TQIA 4WS9A 3CQ2A 2YWCA 4PUGA 1ZB9A 4B3TC 3C29A 1T5HX 3PROC 3NYRA 5IT9D 4NXMC 1M6XA 3J81D 4HPVA 2OBVA 3VNQA 3T1HC 2VQFC 5LCIA 1Q3VA 5LMNC 4NOZA 2E5LC 1HNXC 4BC9A 4DV7C 3LNOA 2E8EA 5H9UA 1HH2P 1BA3A 3NI2A 3GR0A 3EQ6A 4WV3A 2D1RA 4KTTA 4DR6C 4DR7C 4JI2C 1XO0A 5BUQA 1FUGA 1OUQA 5CZXA 3DAYA 2P2JA 3RG2A 1V26A 3E7XA 1O92A 2Z51A 3CW9A 2P2QA 4BSZA 1T5DX 3NPDA 4DV2C 3NKHA 1MDBA 4A8EA 1J5EC 3J80D 4L2ZA 3UXUA 2NCLA 2WD9A 5JRHA 1USPA 3IMLA 1XMOC 3UX2A 3UZ0A 4OX9C 3KXWA 3TDEA 2V6EA 4JI3C 1KKGA 4GXQA 4DKSA 3UEBA 1AIHA 3SQIA 1N2FA 4E0PA 1K0RA 3UX3A 4RVNA 1XNSA 2D1QA 4DUZC 5FLXD 4JI4C 5C6KA 4ODJA 3GR1A 1PU1A 1M6XC 4GKKC 1MXBA 4DWPA 3ETCA 2JNVA 3T1YC 4DR1C 4JI6C 2A3VA 3S82A 1IBMC 2OPLB 2P2FA 5IWAC 2QL8A 5E7QA 5A1IA 1N32C 1KBUA 1GPMA 4G36A 1UWDA 2CXCA 1XS3A 2QVXX 3T79A 1O90A 1NYEA 3H2TA 3I07A 2HHHC 2ZZMA 3CW8X 1ULTA 1TH5A 2E8CA 3JAMD 4G1IA 2WP0C 3PESA 5BSRA 3PBKA 5T8TA 4LF6C 1ZB8A 1V25A 3GKUA 5KEIA 1I94C 4IZ6A 3VNRA 2QVZX 4DV0C 4U5YD 2F4VC 4DCTA 2YCBA 2CRXA 4L7IA 3TUFA 2E7GA 3N2QA 4GS5A 2D28C 3DLPX 1EGAA 3VCFA 1XRBA 3CQ3A 1JOSA 2YWBA 4D4GA 5BSMA 2UUCC 3CRXA 2ATWA 2HOIA 4DR3C 1Z19A 2M5OA 2UXDC 5K85A 2PT7G 5KYTA 4DCUA 3AF5A 3MGVA 3R44A 1USPB 2VZEA 1F44A 4LF4C 2VQEC 1P4EA 1PG4A 3R9XA 1XNRC 4D57A 3K6RA 2QVYX 4K0BA 4TPSB 4DUYC 3A4IA 5BSUA 1QWIA 1FJGC 4LFAC 3I08A 3LGXA 4XX2A 4RLQA 3A9UA 2BJOA 4E0YA 4RM2A 2MCQA 1NZBA 5AE1A 3R9WA 4E10A 5AE2A 3L8CA 2V7BA 1XNQC 3A9VA 3C28A 3FCCA 4LE5A 4DV6C 4F41A 4BC7A 3ETOA 2Y4OA 2CY1A 4PROC 1FLOA 3FCEA 2Y4NA 2CU6A 1QM4A 2BH1X 4JV5C 4KHPC 2KZ0A 1Z1BA 4ISBA 4B3SC 5BSVA 1IB8A 4JI8C 4DV5C 3LNVA 1WCJA 4JI0C
chains in the Genus database with same CATH topology
1NZBA 5CRXA 1F44A 2A3VA 1Q3UA 3VCFA 1MA7A 2HOFA 1P4EA 5DORA 4DKSA 1AIHA 3C28A 3NKHA 1KBUA 4CRXA 3CRXA 4A8EA 1P4EC 1PVRA 5DCFA 1A0PA 3C29A 1FLOA 2HOIA 1XNSA 1Z19A 3UXUA 1XO0A 1M6XA 1DRGA 1OUQA 5C6KA 1Z1BA 1AE9A 1PVPA 1CRXA 1M6XC 2CRXA 1P7DA 1Q3VA 1PVQA 3MGVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NZB A;  5CRX A;  1F44 A;  2A3V A;  1Q3U A;  3VCF A;  1MA7 A;  2HOF A;  1P4E A;  5DOR A;  4DKS A;  1AIH A;  3C28 A;  3NKH A;  1KBU A;  4CRX A;  3CRX A;  4A8E A;  1P4E C;  1PVR A;  5DCF A;  1A0P A;  3C29 A;  1FLO A;  2HOI A;  1XNS A;  1Z19 A;  3UXU A;  1XO0 A;  1M6X A;  1DRG A;  1OUQ A;  5C6K A;  1Z1B A;  1AE9 A;  1PVP A;  1CRX A;  1M6X C;  2CRX A;  1P7D A;  1Q3V A;  1PVQ A;  3MGV A; 
#chains in the Genus database with same CATH topology
 2M5H A;  2KDN A;  3IEU A;  4D4I A;  3O2E A;  3N54 B;  1MA7 A;  1O93 A;  1N33 C;  2ZZN A;  2E8F A;  4OYC A;  2YX1 A;  3LUS A;  2D1S A;  3EER A;  4K0K C;  5KYV A;  4E0Z A;  4ZJZ A;  1VEH A;  4DR4 C;  4YY3 C;  5LMU C;  2P02 A;  4DV1 C;  4NXN C;  3CJE A;  4JYA C;  1RG9 A;  2QW0 X;  5ADZ A;  3E7W A;  2AYA A;  4DCS A;  2EGT A;  4X65 C;  3A25 A;  2P2B A;  2ASB A;  5DOR A;  4R1L A;  4DG8 A;  1P4E C;  1MD9 A;  1PVR A;  2D1T A;  4GKJ C;  1MKY A;  1DRG A;  3TR3 A;  4B3R C;  2P2M A;  4DV3 C;  5BUS A;  2OO4 A;  3IPL A;  1UKK A;  1YJ7 A;  4KTV A;  4PHT A;  3UOW A;  4DR5 C;  1MXC A;  2HOF A;  2ONF A;  4PZP A;  4LF5 C;  4R1M A;  1MXA A;  4F43 A;  4DV4 C;  4IR7 A;  4BBY A;  1HR0 C;  1HNW C;  4FTF A;  5A19 A;  1PA4 A;  4ZLP A;  1XHJ A;  1AE9 A;  3DHV A;  1N34 C;  3GPC A;  4I9G A;  1XRC A;  5BUR A;  2DYJ A;  3NYQ A;  1P7D A;  4X66 C;  1PVQ A;  1AMU A;  3B7W A;  5T8S A;  4RLF A;  1Q3U A;  2VSQ A;  4NDN A;  2KZF A;  3L95 X;  4X62 C;  5AE3 A;  1XRA A;  4X64 C;  4D56 A;  2DHM A;  4E0G A;  2E0G A;  1CRX A;  4I9F A;  1P7L A;  3OTO C;  1VLA A;  2UXB C;  4JI5 C;  5BR8 C;  1IBL C;  3G7S A;  5BSW A;  4AQY C;  4CRX A;  3A26 A;  4PUI A;  4L4Q A;  1V60 A;  5DCF A;  1WH9 A;  3IEV A;  1O9T A;  2D7V A;  2Y27 A;  4MH4 A;  1RY2 A;  4DR2 C;  3C5E A;  4R0M A;  1WF3 A;  5A2Q D;  4G37 A;  1MDF A;  2ZM6 C;  4YHH C;  4RMN A;  2P20 A;  4GXR A;  1IBK C;  4B3M C;  5CRX A;  3LAX A;  4FUT A;  4FUQ A;  3VNS A;  4OXI A;  1NY8 A;  4PUH A;  5A1G A;  4BCA A;  4ACO A;  1A0P A;  1HNZ C;  2MMA B;  1LCI A;  2PN2 A;  3AF6 A;  4JM1 A;  4LF9 C;  4E0J A;  3RV2 A;  2JMP A;  2UXC C;  4JI7 C;  1ML8 A;  4MTN A;  5GTD A;  4RVO A;  2PRO A;  3SO4 A;  4LF8 C;  4LFB C;  2MM9 A;  5IFI A;  5CZV A;  2D27 A;  3CQ1 A;  4EAT A;  4RM3 A;  3AY0 A;  5K8F A;  4LFC C;  2XR1 A;  2HJG A;  4DCV A;  2UUB C;  2UU9 C;  1L2F A;  4LF7 C;  2UUA C;  1LQL A;  1PVP A;  1N36 C;  1PG3 A;  2OPL A;  5BST A;  1XMQ C;  5DV9 A;  2DPL A;  4JI1 C;  4DG9 A;  3TQI A;  4WS9 A;  3CQ2 A;  2YWC A;  4PUG A;  1ZB9 A;  4B3T C;  3C29 A;  1T5H X;  3PRO C;  3NYR A;  5IT9 D;  4NXM C;  1M6X A;  3J81 D;  4HPV A;  2OBV A;  3VNQ A;  3T1H C;  2VQF C;  5LCI A;  1Q3V A;  5LMN C;  4NOZ A;  2E5L C;  1HNX C;  4BC9 A;  4DV7 C;  3LNO A;  2E8E A;  5H9U A;  1HH2 P;  1BA3 A;  3NI2 A;  3GR0 A;  3EQ6 A;  4WV3 A;  2D1R A;  4KTT A;  4DR6 C;  4DR7 C;  4JI2 C;  1XO0 A;  5BUQ A;  1FUG A;  1OUQ A;  5CZX A;  3DAY A;  2P2J A;  3RG2 A;  1V26 A;  3E7X A;  1O92 A;  2Z51 A;  3CW9 A;  2P2Q A;  4BSZ A;  1T5D X;  3NPD A;  4DV2 C;  3NKH A;  1MDB A;  4A8E A;  1J5E C;  3J80 D;  4L2Z A;  3UXU A;  2NCL A;  2WD9 A;  5JRH A;  1USP A;  3IML A;  1XMO C;  3UX2 A;  3UZ0 A;  4OX9 C;  3KXW A;  3TDE A;  2V6E A;  4JI3 C;  1KKG A;  4GXQ A;  4DKS A;  3UEB A;  1AIH A;  3SQI A;  1N2F A;  4E0P A;  1K0R A;  3UX3 A;  4RVN A;  1XNS A;  2D1Q A;  4DUZ C;  5FLX D;  4JI4 C;  5C6K A;  4ODJ A;  3GR1 A;  1PU1 A;  1M6X C;  4GKK C;  1MXB A;  4DWP A;  3ETC A;  2JNV A;  3T1Y C;  4DR1 C;  4JI6 C;  2A3V A;  3S82 A;  1IBM C;  2OPL B;  2P2F A;  5IWA C;  2QL8 A;  5E7Q A;  5A1I A;  1N32 C;  1KBU A;  1GPM A;  4G36 A;  1UWD A;  2CXC A;  1XS3 A;  2QVX X;  3T79 A;  1O90 A;  1NYE A;  3H2T A;  3I07 A;  2HHH C;  2ZZM A;  3CW8 X;  1ULT A;  1TH5 A;  2E8C A;  3JAM D;  4G1I A;  2WP0 C;  3PES A;  5BSR A;  3PBK A;  5T8T A;  4LF6 C;  1ZB8 A;  1V25 A;  3GKU A;  5KEI A;  1I94 C;  4IZ6 A;  3VNR A;  2QVZ X;  4DV0 C;  4U5Y D;  2F4V C;  4DCT A;  2YCB A;  2CRX A;  4L7I A;  3TUF A;  2E7G A;  3N2Q A;  4GS5 A;  2D28 C;  3DLP X;  1EGA A;  3VCF A;  1XRB A;  3CQ3 A;  1JOS A;  2YWB A;  4D4G A;  5BSM A;  2UUC C;  3CRX A;  2ATW A;  2HOI A;  4DR3 C;  1Z19 A;  2M5O A;  2UXD C;  5K85 A;  2PT7 G;  5KYT A;  4DCU A;  3AF5 A;  3MGV A;  3R44 A;  1USP B;  2VZE A;  1F44 A;  4LF4 C;  2VQE C;  1P4E A;  1PG4 A;  3R9X A;  1XNR C;  4D57 A;  3K6R A;  2QVY X;  4K0B A;  4TPS B;  4DUY C;  3A4I A;  5BSU A;  1QWI A;  1FJG C;  4LFA C;  3I08 A;  3LGX A;  4XX2 A;  4RLQ A;  3A9U A;  2BJO A;  4E0Y A;  4RM2 A;  2MCQ A;  1NZB A;  5AE1 A;  3R9W A;  4E10 A;  5AE2 A;  3L8C A;  2V7B A;  1XNQ C;  3A9V A;  3C28 A;  3FCC A;  4LE5 A;  4DV6 C;  4F41 A;  4BC7 A;  3ETO A;  2Y4O A;  2CY1 A;  4PRO C;  1FLO A;  3FCE A;  2Y4N A;  2CU6 A;  1QM4 A;  2BH1 X;  4JV5 C;  4KHP C;  2KZ0 A;  1Z1B A;  4ISB A;  4B3S C;  5BSV A;  1IB8 A;  4JI8 C;  4DV5 C;  3LNV A;  1WCJ A;  4JI0 C; 
#chains in the Genus database with same CATH homology
 1NZB A;  5CRX A;  1F44 A;  2A3V A;  1Q3U A;  3VCF A;  1MA7 A;  2HOF A;  1P4E A;  5DOR A;  4DKS A;  1AIH A;  3C28 A;  3NKH A;  1KBU A;  4CRX A;  3CRX A;  4A8E A;  1P4E C;  1PVR A;  5DCF A;  1A0P A;  3C29 A;  1FLO A;  2HOI A;  1XNS A;  1Z19 A;  3UXU A;  1XO0 A;  1M6X A;  1DRG A;  1OUQ A;  5C6K A;  1Z1B A;  1AE9 A;  1PVP A;  1CRX A;  1M6X C;  2CRX A;  1P7D A;  1Q3V A;  1PVQ A;  3MGV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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