1M6XC

Flpe-holliday junction complex
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Symmetrized FRT site
publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
total genus 125
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xC01
3C29A 4A8EA 1CRXA 1FLOA 1PVRA 1NZBA 1Q3VA 1MA7A 1A0PA 1XO0A 3UXUA 2HOIA 3VCFA 1M6XC 4DKSA 1DRGA 2A3VA 5DCFA 3MGVA 1P7DA 1P4EA 3CRXA 4CRXA 2HOFA 5C6KA 1Z1BA 1KBUA 1P4EC 5CRXA 1AIHA 3NKHA 1PVPA 1AE9A 1F44A 1Z19A 1Q3UA 1OUQA 1XNSA 1M6XA 1PVQA 3C28A 5DORA 2CRXA
chains in the Genus database with same CATH superfamily
1T5HX 1PVRA 2ZZNA 2V7BA 4DCVA 2V6EA 3L95X 3LUSA 1RG9A 3NI2A 4JI8C 2AYAA 4LF7C 1AIHA 4B3TC 1IBLC 4DR2C 2D1QA 2QW0X 4MTNA 4DV1C 1CRXA 4FTFA 5AE1A 3E7XA 1Q3VA 3GKUA 3SO4A 2M5HA 5K8FA 3EQ6A 4JI1C 2YX1A 4PUGA 1GPMA 2ASBA 1XRBA 1IB8A 4DV7C 5FLXD 3JAMD 3FCEA 1XRCA 5BUSA 4E0PA 4U5YD 1J5EC 2Z51A 4RVOA 4E0JA 1PG3A 4BC7A 3CW9A 4EATA 3C29A 3NYQA 2P2MA 4PROC 5A2QD 1N32C 4DV6C 3VCFA 3VNSA 2OO4A 3E7WA 4WS9A 4KHPC 5BSUA 3AF5A 4GXRA 3LNOA 3S82A 2MM9A 4ZLPA 3UOWA 4WV3A 2P2JA 5AE2A 3R44A 3T1YC 4ODJA 4TPSB 3EERA 3J81D 4IZ6A 2YWCA 3IEUA 3UEBA 3AY0A 3UX2A 4D57A 4D4IA 1XNRC 3TDEA 1M6XC 4DV4C 5BR8C 1MKYA 1MDBA 4DR5C 4OX9C 4DCUA 5ADZA 2HJGA 2QVXX 3PROC 1I94C 1O90A 2QVZX 3C5EA 2YWBA 3T1HC 3AF6A 1FLOA 3CW8X 5BURA 3LAXA 1JOSA 4E0GA 3IEVA 3GR0A 2Y4NA 2Y4OA 1QWIA 3LGXA 2KZFA 4NOZA 4OXIA 4L4QA 1VEHA 1ULTA 5A1IA 2ONFA 4DR7C 4KTTA 5DV9A 1NY8A 3A25A 1IBMC 3ETOA 2BH1X 3A26A 2HOFA 3CJEA 4X64C 1L2FA 5IFIA 4BSZA 4DG9A 1PU1A 2UUBC 3GPCA 2PN2A 2HHHC 2D7VA 3VNQA 2MCQA 1MD9A 4DCTA 5BSTA 4DV5C 1KBUA 4X62C 5CZVA 1Q3UA 5LMUC 3R9XA 4PUHA 4B3RC 2F4VC 3C28A 2QL8A 3DLPX 5DORA 2UXBC 2CRXA 4JI5C 1NZBA 4R1LA 3UXUA 4YY3C 1O92A 3MGVA 1VLAA 2DYJA 4BC9A 1P4EA 2KDNA 1HNXC 4F41A 4JI7C 5IT9D 3NPDA 3B7WA 3KXWA 4R1MA 2CY1A 3CQ3A 1KKGA 4AQYC 4DUZC 4ACOA 1PA4A 3N54B 4DKSA 2UXCC 1MDFA 4RVNA 5DCFA 1P7LA 2D28C 4X65C 4DWPA 4GKKC 4DV3C 3SQIA 5A19A 3R9WA 2JNVA 4MH4A 3IPLA 4LF5C 4E10A 1N2FA 3T79A 4RM2A 4DG8A 4I9FA 1N34C 2UXDC 1P7DA 4GKJC 5KEIA 4DR6C 5AE3A 4I9GA 2VQEC 2JMPA 3O2EA 2XR1A 3L8CA 5K85A 4G37A 3LNVA 4BBYA 1AMUA 3A9UA 1XNQC 3I07A 4JI6C 3TR3A 1XO0A 3A4IA 4DUYC 5KYTA 1DRGA 1UWDA 4G36A 4L2ZA 1HH2P 1RY2A 2KZ0A 4FUTA 5CZXA 1TH5A 3IMLA 3PBKA 2DPLA 1XMQC 3K6RA 1OUQA 2DHMA 4X66C 1O93A 5LMNC 4YHHC 2D27A 4RMNA 2P02A 1A0PA 2VZEA 3DAYA 1O9TA 1FJGC 2CU6A 4GS5A 4JI4C 1FUGA 2D1TA 2Y27A 4IR7A 1MXCA 1UKKA 4OYCA 2E5LC 1V25A 4XX2A 5KYVA 4L7IA 4LFBC 1Z1BA 2UU9C 4RLQA 4D56A 3PESA 4NXMC 2E8CA 1AE9A 3ETCA 4LF9C 1M6XA 3A9VA 5T8TA 2YCBA 4JI3C 5H9UA 4GXQA 3G7SA 4R0MA 1HR0C 1ZB9A 4JYAC 2E8FA 3RV2A 2ZZMA 1XHJA 1YJ7A 4JI0C 5BSRA 2WP0C 1PVPA 4K0BA 4LF6C 1WCJA 3TUFA 2P2QA 1MXAA 3VNRA 4B3SC 4LE5A 4A8EA 1MA7A 2QVYX 5JRHA 2E0GA 1QM4A 4JM1A 2A3VA 4DR3C 4CRXA 3OTOC 4DR1C 4LF8C 5GTDA 5BSMA 4BCAA 5C6KA 1HNZC 2WD9A 4F43A 2EGTA 1K0RA 4HPVA 4ISBA 1PG4A 4B3MC 4RLFA 4PUIA 1F44A 1WF3A 4DV0C 4RM3A 4LF4C 4DV2C 4ZJZA 2UUCC 3TQIA 4PZPA 3J80D 3I08A 4G1IA 5E7QA 2HOIA 4LFCC 1ML8A 3CRXA 2ATWA 5BSWA 2UUAC 4D4GA 1USPA 2ZM6C 4E0YA 1NYEA 5LCIA 5CRXA 4JI2C 2NCLA 2D1SA 1Z19A 4DR4C 1MXBA 3UZ0A 1HNWC 1PVQA 3FCCA 1XRAA 2E7GA 3UX3A 2E8EA 4FUQA 4K0KC 2VQFC 5BSVA 3GR1A 1LCIA 2CXCA 4PHTA 2OPLA 2D1RA 1ZB8A 1BA3A 1V60A 3CQ2A 2PROA 1T5DX 1P4EC 2PT7G 3NKHA 1IBKC 4E0ZA 2P2BA 1V26A 1N36C 2OBVA 2BJOA 2M5OA 1USPB 4KTVA 5BUQA 5T8SA 2P20A 2P2FA 1LQLA 4NXNC 4DCSA 1XMOC 1EGAA 1XS3A 1WH9A 3RG2A 3N2QA 1N33C 4JV5C 2VSQA 3CQ1A 2OPLB 3NYRA 5IWAC 4NDNA 3H2TA 1XNSA 4LFAC 2MMAB 5A1GA 3DHVA
chains in the Genus database with same CATH topology
3C29A 4A8EA 1CRXA 1FLOA 1PVRA 1NZBA 1Q3VA 1MA7A 1A0PA 1XO0A 3UXUA 2HOIA 3VCFA 1M6XC 4DKSA 1DRGA 2A3VA 5DCFA 3MGVA 1P7DA 1P4EA 3CRXA 4CRXA 2HOFA 5C6KA 1Z1BA 1KBUA 1P4EC 5CRXA 1AIHA 3NKHA 1PVPA 1AE9A 1F44A 1Z19A 1Q3UA 1OUQA 1XNSA 1M6XA 1PVQA 3C28A 5DORA 2CRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C29 A;  4A8E A;  1CRX A;  1FLO A;  1PVR A;  1NZB A;  1Q3V A;  1MA7 A;  1A0P A;  1XO0 A;  3UXU A;  2HOI A;  3VCF A;  1M6X C;  4DKS A;  1DRG A;  2A3V A;  5DCF A;  3MGV A;  1P7D A;  1P4E A;  3CRX A;  4CRX A;  2HOF A;  5C6K A;  1Z1B A;  1KBU A;  1P4E C;  5CRX A;  1AIH A;  3NKH A;  1PVP A;  1AE9 A;  1F44 A;  1Z19 A;  1Q3U A;  1OUQ A;  1XNS A;  1M6X A;  1PVQ A;  3C28 A;  5DOR A;  2CRX A; 
#chains in the Genus database with same CATH topology
 1T5H X;  1PVR A;  2ZZN A;  2V7B A;  4DCV A;  2V6E A;  3L95 X;  3LUS A;  1RG9 A;  3NI2 A;  4JI8 C;  2AYA A;  4LF7 C;  1AIH A;  4B3T C;  1IBL C;  4DR2 C;  2D1Q A;  2QW0 X;  4MTN A;  4DV1 C;  1CRX A;  4FTF A;  5AE1 A;  3E7X A;  1Q3V A;  3GKU A;  3SO4 A;  2M5H A;  5K8F A;  3EQ6 A;  4JI1 C;  2YX1 A;  4PUG A;  1GPM A;  2ASB A;  1XRB A;  1IB8 A;  4DV7 C;  5FLX D;  3JAM D;  3FCE A;  1XRC A;  5BUS A;  4E0P A;  4U5Y D;  1J5E C;  2Z51 A;  4RVO A;  4E0J A;  1PG3 A;  4BC7 A;  3CW9 A;  4EAT A;  3C29 A;  3NYQ A;  2P2M A;  4PRO C;  5A2Q D;  1N32 C;  4DV6 C;  3VCF A;  3VNS A;  2OO4 A;  3E7W A;  4WS9 A;  4KHP C;  5BSU A;  3AF5 A;  4GXR A;  3LNO A;  3S82 A;  2MM9 A;  4ZLP A;  3UOW A;  4WV3 A;  2P2J A;  5AE2 A;  3R44 A;  3T1Y C;  4ODJ A;  4TPS B;  3EER A;  3J81 D;  4IZ6 A;  2YWC A;  3IEU A;  3UEB A;  3AY0 A;  3UX2 A;  4D57 A;  4D4I A;  1XNR C;  3TDE A;  1M6X C;  4DV4 C;  5BR8 C;  1MKY A;  1MDB A;  4DR5 C;  4OX9 C;  4DCU A;  5ADZ A;  2HJG A;  2QVX X;  3PRO C;  1I94 C;  1O90 A;  2QVZ X;  3C5E A;  2YWB A;  3T1H C;  3AF6 A;  1FLO A;  3CW8 X;  5BUR A;  3LAX A;  1JOS A;  4E0G A;  3IEV A;  3GR0 A;  2Y4N A;  2Y4O A;  1QWI A;  3LGX A;  2KZF A;  4NOZ A;  4OXI A;  4L4Q A;  1VEH A;  1ULT A;  5A1I A;  2ONF A;  4DR7 C;  4KTT A;  5DV9 A;  1NY8 A;  3A25 A;  1IBM C;  3ETO A;  2BH1 X;  3A26 A;  2HOF A;  3CJE A;  4X64 C;  1L2F A;  5IFI A;  4BSZ A;  4DG9 A;  1PU1 A;  2UUB C;  3GPC A;  2PN2 A;  2HHH C;  2D7V A;  3VNQ A;  2MCQ A;  1MD9 A;  4DCT A;  5BST A;  4DV5 C;  1KBU A;  4X62 C;  5CZV A;  1Q3U A;  5LMU C;  3R9X A;  4PUH A;  4B3R C;  2F4V C;  3C28 A;  2QL8 A;  3DLP X;  5DOR A;  2UXB C;  2CRX A;  4JI5 C;  1NZB A;  4R1L A;  3UXU A;  4YY3 C;  1O92 A;  3MGV A;  1VLA A;  2DYJ A;  4BC9 A;  1P4E A;  2KDN A;  1HNX C;  4F41 A;  4JI7 C;  5IT9 D;  3NPD A;  3B7W A;  3KXW A;  4R1M A;  2CY1 A;  3CQ3 A;  1KKG A;  4AQY C;  4DUZ C;  4ACO A;  1PA4 A;  3N54 B;  4DKS A;  2UXC C;  1MDF A;  4RVN A;  5DCF A;  1P7L A;  2D28 C;  4X65 C;  4DWP A;  4GKK C;  4DV3 C;  3SQI A;  5A19 A;  3R9W A;  2JNV A;  4MH4 A;  3IPL A;  4LF5 C;  4E10 A;  1N2F A;  3T79 A;  4RM2 A;  4DG8 A;  4I9F A;  1N34 C;  2UXD C;  1P7D A;  4GKJ C;  5KEI A;  4DR6 C;  5AE3 A;  4I9G A;  2VQE C;  2JMP A;  3O2E A;  2XR1 A;  3L8C A;  5K85 A;  4G37 A;  3LNV A;  4BBY A;  1AMU A;  3A9U A;  1XNQ C;  3I07 A;  4JI6 C;  3TR3 A;  1XO0 A;  3A4I A;  4DUY C;  5KYT A;  1DRG A;  1UWD A;  4G36 A;  4L2Z A;  1HH2 P;  1RY2 A;  2KZ0 A;  4FUT A;  5CZX A;  1TH5 A;  3IML A;  3PBK A;  2DPL A;  1XMQ C;  3K6R A;  1OUQ A;  2DHM A;  4X66 C;  1O93 A;  5LMN C;  4YHH C;  2D27 A;  4RMN A;  2P02 A;  1A0P A;  2VZE A;  3DAY A;  1O9T A;  1FJG C;  2CU6 A;  4GS5 A;  4JI4 C;  1FUG A;  2D1T A;  2Y27 A;  4IR7 A;  1MXC A;  1UKK A;  4OYC A;  2E5L C;  1V25 A;  4XX2 A;  5KYV A;  4L7I A;  4LFB C;  1Z1B A;  2UU9 C;  4RLQ A;  4D56 A;  3PES A;  4NXM C;  2E8C A;  1AE9 A;  3ETC A;  4LF9 C;  1M6X A;  3A9V A;  5T8T A;  2YCB A;  4JI3 C;  5H9U A;  4GXQ A;  3G7S A;  4R0M A;  1HR0 C;  1ZB9 A;  4JYA C;  2E8F A;  3RV2 A;  2ZZM A;  1XHJ A;  1YJ7 A;  4JI0 C;  5BSR A;  2WP0 C;  1PVP A;  4K0B A;  4LF6 C;  1WCJ A;  3TUF A;  2P2Q A;  1MXA A;  3VNR A;  4B3S C;  4LE5 A;  4A8E A;  1MA7 A;  2QVY X;  5JRH A;  2E0G A;  1QM4 A;  4JM1 A;  2A3V A;  4DR3 C;  4CRX A;  3OTO C;  4DR1 C;  4LF8 C;  5GTD A;  5BSM A;  4BCA A;  5C6K A;  1HNZ C;  2WD9 A;  4F43 A;  2EGT A;  1K0R A;  4HPV A;  4ISB A;  1PG4 A;  4B3M C;  4RLF A;  4PUI A;  1F44 A;  1WF3 A;  4DV0 C;  4RM3 A;  4LF4 C;  4DV2 C;  4ZJZ A;  2UUC C;  3TQI A;  4PZP A;  3J80 D;  3I08 A;  4G1I A;  5E7Q A;  2HOI A;  4LFC C;  1ML8 A;  3CRX A;  2ATW A;  5BSW A;  2UUA C;  4D4G A;  1USP A;  2ZM6 C;  4E0Y A;  1NYE A;  5LCI A;  5CRX A;  4JI2 C;  2NCL A;  2D1S A;  1Z19 A;  4DR4 C;  1MXB A;  3UZ0 A;  1HNW C;  1PVQ A;  3FCC A;  1XRA A;  2E7G A;  3UX3 A;  2E8E A;  4FUQ A;  4K0K C;  2VQF C;  5BSV A;  3GR1 A;  1LCI A;  2CXC A;  4PHT A;  2OPL A;  2D1R A;  1ZB8 A;  1BA3 A;  1V60 A;  3CQ2 A;  2PRO A;  1T5D X;  1P4E C;  2PT7 G;  3NKH A;  1IBK C;  4E0Z A;  2P2B A;  1V26 A;  1N36 C;  2OBV A;  2BJO A;  2M5O A;  1USP B;  4KTV A;  5BUQ A;  5T8S A;  2P20 A;  2P2F A;  1LQL A;  4NXN C;  4DCS A;  1XMO C;  1EGA A;  1XS3 A;  1WH9 A;  3RG2 A;  3N2Q A;  1N33 C;  4JV5 C;  2VSQ A;  3CQ1 A;  2OPL B;  3NYR A;  5IWA C;  4NDN A;  3H2T A;  1XNS A;  4LFA C;  2MMA B;  5A1G A;  3DHV A; 
#chains in the Genus database with same CATH homology
 3C29 A;  4A8E A;  1CRX A;  1FLO A;  1PVR A;  1NZB A;  1Q3V A;  1MA7 A;  1A0P A;  1XO0 A;  3UXU A;  2HOI A;  3VCF A;  1M6X C;  4DKS A;  1DRG A;  2A3V A;  5DCF A;  3MGV A;  1P7D A;  1P4E A;  3CRX A;  4CRX A;  2HOF A;  5C6K A;  1Z1B A;  1KBU A;  1P4E C;  5CRX A;  1AIH A;  3NKH A;  1PVP A;  1AE9 A;  1F44 A;  1Z19 A;  1Q3U A;  1OUQ A;  1XNS A;  1M6X A;  1PVQ A;  3C28 A;  5DOR A;  2CRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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