1M6XC

Flpe-holliday junction complex
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
molecule keywords Symmetrized FRT site
total genus 125
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xC01
5DCFA 2A3VA 1Z19A 1Q3VA 1M6XA 1KBUA 1MA7A 2HOFA 4DKSA 1XNSA 1A0PA 3VCFA 4A8EA 3C28A 3UXUA 1OUQA 3MGVA 3CRXA 1XO0A 1DRGA 1NZBA 1P7DA 1P4EC 3C29A 1CRXA 3NKHA 2CRXA 1P4EA 1AE9A 1F44A 5CRXA 5C6KA 1PVPA 1PVRA 1Q3UA 1PVQA 5DORA 2HOIA 4CRXA 1FLOA 1M6XC 1Z1BA 1AIHA
chains in the Genus database with same CATH superfamily
4I9FA 3LAXA 2UUCC 4DR2C 2QVZX 3B7WA 2HOFA 2P2JA 3K6RA 5BSTA 3J80D 4WS9A 3GKUA 3O2EA 4TPSB 4E0GA 1HNZC 1P7LA 5AE2A 3TDEA 3IPLA 3TR3A 4PUHA 4DV7C 4JI3C 3CQ3A 4E10A 2PN2A 3EQ6A 5BSUA 5ADZA 1M6XA 1MA7A 3OTOC 4L4QA 4DG9A 2QL8A 4ISBA 1IB8A 3T79A 2F4VC 2PT7G 1ZB8A 2P20A 4DCUA 5A19A 3T1HC 1AE9A 4JYAC 3ETCA 1V25A 4L7IA 4JI4C 4NDNA 2WD9A 3FCCA 3GR1A 5LCIA 5BR8C 4LE5A 1MXAA 3VCFA 3J81D 4B3TC 5A2QD 3GPCA 4DV3C 1N34C 1MKYA 5BSWA 3IEVA 2CRXA 3LNVA 5A1IA 3L8CA 4B3MC 5DORA 2ASBA 5K8FA 2WP0C 4ACOA 1LCIA 5CZVA 1KBUA 3ETOA 4DV1C 2DPLA 1OUQA 1USPB 2AYAA 2VZEA 1NYEA 3CW9A 4K0KC 3FCEA 3R9XA 2D1SA 4LFBC 5GTDA 1IBLC 4JI2C 1PVRA 2ZZNA 4LFAC 5T8SA 5BSRA 1QM4A 4X65C 4BCAA 3N2QA 2BH1X 5BUQA 2HHHC 2ZM6C 4DCTA 4YY3C 2UXBC 3AF5A 4KHPC 2YWCA 1YJ7A 3CRXA 2UUAC 2CY1A 1VEHA 1FJGC 1XMOC 2D28C 2Y27A 4F41A 2D7VA 3RG2A 4RLQA 1XS3A 1JOSA 1K0RA 1UWDA 2HJGA 3UZ0A 3UX2A 1T5DX 4DUZC 5IT9D 4B3SC 4DWPA 3VNQA 4KTTA 4BSZA 5DV9A 4X62C 3L95X 3C5EA 4JI8C 3A26A 4NXMC 3DAYA 4GXRA 4L2ZA 4OYCA 1N32C 2JNVA 4LF5C 2KZ0A 4U5YD 4GKKC 1KKGA 5BSMA 1XNRC 3A25A 2V7BA 2M5OA 4OX9C 1O92A 5KEIA 2VSQA 3LUSA 2NCLA 1Q3UA 4K0BA 2OPLA 2ZZMA 5DCFA 4MH4A 4DCSA 5JRHA 3UX3A 4G1IA 4DKSA 4GXQA 4JI6C 4ZJZA 4DV2C 1O9TA 1V60A 1NZBA 3E7WA 5LMUC 2ATWA 2OBVA 2YCBA 4FTFA 3JAMD 1XRAA 4DR6C 3AF6A 3UOWA 4DR3C 1HNWC 1PU1A 1FUGA 1Q3VA 4X64C 4RVOA 3C28A 2UXDC 2QVXX 4PZPA 3SO4A 2KDNA 2Z51A 4PUIA 1P4EA 1HR0C 1RG9A 5CRXA 1V26A 5C6KA 5E7QA 3DLPX 2UXCC 1PG4A 3CQ2A 4ODJA 4G36A 4NXNC 3AY0A 4A8EA 1MXBA 2E8CA 1P7DA 2E7GA 2QVYX 1BA3A 4E0ZA 4LF7C 4JI5C 2OO4A 1GPMA 1PVPA 4GS5A 2HOIA 2JMPA 1FLOA 4DV5C 3I07A 3NI2A 1HH2P 4LF9C 4KTVA 2Y4OA 5KYVA 1WH9A 3EERA 3N54B 2P2FA 3NYQA 3UXUA 4LF4C 2P02A 4D57A 4JV5C 4PUGA 3TUFA 2P2BA 1AMUA 4DUYC 5T8TA 1ULTA 2D1QA 2KZFA 4R1LA 4IR7A 2EGTA 2YWBA 4CRXA 1M6XC 1NY8A 1XMQC 4LF8C 1Z19A 1TH5A 1MDFA 3RV2A 2D1RA 3PESA 4JI1C 4DR7C 3LGXA 1DRGA 3NKHA 3E7XA 2E8FA 2CXCA 1ML8A 1F44A 3TQIA 1WF3A 3A4IA 4RVNA 4RLFA 3S82A 1PA4A 2M5HA 3PBKA 1J5EC 2DHMA 5CZXA 4WV3A 1O93A 4E0JA 3VNRA 3UEBA 2P2QA 4B3RC 3LNOA 3NPDA 4HPVA 2OPLB 4RM2A 2E0GA 1P4EC 3G7SA 4FUQA 4ZLPA 2MCQA 4MTNA 1PVQA 2PROA 4JM1A 1Z1BA 1AIHA 1IBMC 2A3VA 4FUTA 4NOZA 3CQ1A 4LF6C 5K85A 1XNSA 4X66C 4DR4C 4IZ6A 1XO0A 4E0PA 5LMNC 4GKJC 1CRXA 1L2FA 1O90A 4LFCC 5KYTA 1XRBA 2DYJA 4AQYC 3IEUA 4BC9A 2YX1A 4YHHC 5BUSA 2Y4NA 5H9UA 3A9VA 4DR1C 1T5HX 2QW0X 3SQIA 2D27A 1RY2A 4R0MA 2P2MA 3CJEA 1UKKA 1MXCA 2E8EA 1HNXC 4XX2A 1EGAA 3A9UA 5IWAC 3PROC 1USPA 3NYRA 4EATA 4D4IA 2E5LC 3R9WA 2UU9C 1N36C 4JI7C 1QWIA 5BURA 3H2TA 5BSVA 1IBKC 4DCVA 2V6EA 4BBYA 3VNSA 3R44A 4I9GA 4D4GA 1MDBA 2MM9A 1N2FA 4R1MA 5AE3A 4PHTA 1XRCA 5AE1A 4DV6C 1VLAA 2ONFA 4OXIA 4F43A 3IMLA 4G37A 1PG3A 5FLXD 5A1GA 3I08A 4DV4C 4D56A 1A0PA 3GR0A 4PROC 1XNQC 1N33C 3KXWA 4BC7A 1MD9A 2VQEC 4RM3A 3MGVA 1LQLA 5IFIA 2VQFC 3C29A 2D1TA 4DG8A 4DR5C 4E0YA 2BJOA 1XHJA 2UUBC 3DHVA 2XR1A 4JI0C 1WCJA 2MMAB 1I94C 1ZB9A 3CW8X 4RMNA 4DV0C 2CU6A 3T1YC
chains in the Genus database with same CATH topology
5DCFA 2A3VA 1Z19A 1Q3VA 1M6XA 1KBUA 1MA7A 2HOFA 4DKSA 1XNSA 1A0PA 3VCFA 4A8EA 3C28A 3UXUA 1OUQA 3MGVA 3CRXA 1XO0A 1DRGA 1NZBA 1P7DA 1P4EC 3C29A 1CRXA 3NKHA 2CRXA 1P4EA 1AE9A 1F44A 5CRXA 5C6KA 1PVPA 1PVRA 1Q3UA 1PVQA 5DORA 2HOIA 4CRXA 1FLOA 1M6XC 1Z1BA 1AIHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DCF A;  2A3V A;  1Z19 A;  1Q3V A;  1M6X A;  1KBU A;  1MA7 A;  2HOF A;  4DKS A;  1XNS A;  1A0P A;  3VCF A;  4A8E A;  3C28 A;  3UXU A;  1OUQ A;  3MGV A;  3CRX A;  1XO0 A;  1DRG A;  1NZB A;  1P7D A;  1P4E C;  3C29 A;  1CRX A;  3NKH A;  2CRX A;  1P4E A;  1AE9 A;  1F44 A;  5CRX A;  5C6K A;  1PVP A;  1PVR A;  1Q3U A;  1PVQ A;  5DOR A;  2HOI A;  4CRX A;  1FLO A;  1M6X C;  1Z1B A;  1AIH A; 
#chains in the Genus database with same CATH topology
 4I9F A;  3LAX A;  2UUC C;  4DR2 C;  2QVZ X;  3B7W A;  2HOF A;  2P2J A;  3K6R A;  5BST A;  3J80 D;  4WS9 A;  3GKU A;  3O2E A;  4TPS B;  4E0G A;  1HNZ C;  1P7L A;  5AE2 A;  3TDE A;  3IPL A;  3TR3 A;  4PUH A;  4DV7 C;  4JI3 C;  3CQ3 A;  4E10 A;  2PN2 A;  3EQ6 A;  5BSU A;  5ADZ A;  1M6X A;  1MA7 A;  3OTO C;  4L4Q A;  4DG9 A;  2QL8 A;  4ISB A;  1IB8 A;  3T79 A;  2F4V C;  2PT7 G;  1ZB8 A;  2P20 A;  4DCU A;  5A19 A;  3T1H C;  1AE9 A;  4JYA C;  3ETC A;  1V25 A;  4L7I A;  4JI4 C;  4NDN A;  2WD9 A;  3FCC A;  3GR1 A;  5LCI A;  5BR8 C;  4LE5 A;  1MXA A;  3VCF A;  3J81 D;  4B3T C;  5A2Q D;  3GPC A;  4DV3 C;  1N34 C;  1MKY A;  5BSW A;  3IEV A;  2CRX A;  3LNV A;  5A1I A;  3L8C A;  4B3M C;  5DOR A;  2ASB A;  5K8F A;  2WP0 C;  4ACO A;  1LCI A;  5CZV A;  1KBU A;  3ETO A;  4DV1 C;  2DPL A;  1OUQ A;  1USP B;  2AYA A;  2VZE A;  1NYE A;  3CW9 A;  4K0K C;  3FCE A;  3R9X A;  2D1S A;  4LFB C;  5GTD A;  1IBL C;  4JI2 C;  1PVR A;  2ZZN A;  4LFA C;  5T8S A;  5BSR A;  1QM4 A;  4X65 C;  4BCA A;  3N2Q A;  2BH1 X;  5BUQ A;  2HHH C;  2ZM6 C;  4DCT A;  4YY3 C;  2UXB C;  3AF5 A;  4KHP C;  2YWC A;  1YJ7 A;  3CRX A;  2UUA C;  2CY1 A;  1VEH A;  1FJG C;  1XMO C;  2D28 C;  2Y27 A;  4F41 A;  2D7V A;  3RG2 A;  4RLQ A;  1XS3 A;  1JOS A;  1K0R A;  1UWD A;  2HJG A;  3UZ0 A;  3UX2 A;  1T5D X;  4DUZ C;  5IT9 D;  4B3S C;  4DWP A;  3VNQ A;  4KTT A;  4BSZ A;  5DV9 A;  4X62 C;  3L95 X;  3C5E A;  4JI8 C;  3A26 A;  4NXM C;  3DAY A;  4GXR A;  4L2Z A;  4OYC A;  1N32 C;  2JNV A;  4LF5 C;  2KZ0 A;  4U5Y D;  4GKK C;  1KKG A;  5BSM A;  1XNR C;  3A25 A;  2V7B A;  2M5O A;  4OX9 C;  1O92 A;  5KEI A;  2VSQ A;  3LUS A;  2NCL A;  1Q3U A;  4K0B A;  2OPL A;  2ZZM A;  5DCF A;  4MH4 A;  4DCS A;  5JRH A;  3UX3 A;  4G1I A;  4DKS A;  4GXQ A;  4JI6 C;  4ZJZ A;  4DV2 C;  1O9T A;  1V60 A;  1NZB A;  3E7W A;  5LMU C;  2ATW A;  2OBV A;  2YCB A;  4FTF A;  3JAM D;  1XRA A;  4DR6 C;  3AF6 A;  3UOW A;  4DR3 C;  1HNW C;  1PU1 A;  1FUG A;  1Q3V A;  4X64 C;  4RVO A;  3C28 A;  2UXD C;  2QVX X;  4PZP A;  3SO4 A;  2KDN A;  2Z51 A;  4PUI A;  1P4E A;  1HR0 C;  1RG9 A;  5CRX A;  1V26 A;  5C6K A;  5E7Q A;  3DLP X;  2UXC C;  1PG4 A;  3CQ2 A;  4ODJ A;  4G36 A;  4NXN C;  3AY0 A;  4A8E A;  1MXB A;  2E8C A;  1P7D A;  2E7G A;  2QVY X;  1BA3 A;  4E0Z A;  4LF7 C;  4JI5 C;  2OO4 A;  1GPM A;  1PVP A;  4GS5 A;  2HOI A;  2JMP A;  1FLO A;  4DV5 C;  3I07 A;  3NI2 A;  1HH2 P;  4LF9 C;  4KTV A;  2Y4O A;  5KYV A;  1WH9 A;  3EER A;  3N54 B;  2P2F A;  3NYQ A;  3UXU A;  4LF4 C;  2P02 A;  4D57 A;  4JV5 C;  4PUG A;  3TUF A;  2P2B A;  1AMU A;  4DUY C;  5T8T A;  1ULT A;  2D1Q A;  2KZF A;  4R1L A;  4IR7 A;  2EGT A;  2YWB A;  4CRX A;  1M6X C;  1NY8 A;  1XMQ C;  4LF8 C;  1Z19 A;  1TH5 A;  1MDF A;  3RV2 A;  2D1R A;  3PES A;  4JI1 C;  4DR7 C;  3LGX A;  1DRG A;  3NKH A;  3E7X A;  2E8F A;  2CXC A;  1ML8 A;  1F44 A;  3TQI A;  1WF3 A;  3A4I A;  4RVN A;  4RLF A;  3S82 A;  1PA4 A;  2M5H A;  3PBK A;  1J5E C;  2DHM A;  5CZX A;  4WV3 A;  1O93 A;  4E0J A;  3VNR A;  3UEB A;  2P2Q A;  4B3R C;  3LNO A;  3NPD A;  4HPV A;  2OPL B;  4RM2 A;  2E0G A;  1P4E C;  3G7S A;  4FUQ A;  4ZLP A;  2MCQ A;  4MTN A;  1PVQ A;  2PRO A;  4JM1 A;  1Z1B A;  1AIH A;  1IBM C;  2A3V A;  4FUT A;  4NOZ A;  3CQ1 A;  4LF6 C;  5K85 A;  1XNS A;  4X66 C;  4DR4 C;  4IZ6 A;  1XO0 A;  4E0P A;  5LMN C;  4GKJ C;  1CRX A;  1L2F A;  1O90 A;  4LFC C;  5KYT A;  1XRB A;  2DYJ A;  4AQY C;  3IEU A;  4BC9 A;  2YX1 A;  4YHH C;  5BUS A;  2Y4N A;  5H9U A;  3A9V A;  4DR1 C;  1T5H X;  2QW0 X;  3SQI A;  2D27 A;  1RY2 A;  4R0M A;  2P2M A;  3CJE A;  1UKK A;  1MXC A;  2E8E A;  1HNX C;  4XX2 A;  1EGA A;  3A9U A;  5IWA C;  3PRO C;  1USP A;  3NYR A;  4EAT A;  4D4I A;  2E5L C;  3R9W A;  2UU9 C;  1N36 C;  4JI7 C;  1QWI A;  5BUR A;  3H2T A;  5BSV A;  1IBK C;  4DCV A;  2V6E A;  4BBY A;  3VNS A;  3R44 A;  4I9G A;  4D4G A;  1MDB A;  2MM9 A;  1N2F A;  4R1M A;  5AE3 A;  4PHT A;  1XRC A;  5AE1 A;  4DV6 C;  1VLA A;  2ONF A;  4OXI A;  4F43 A;  3IML A;  4G37 A;  1PG3 A;  5FLX D;  5A1G A;  3I08 A;  4DV4 C;  4D56 A;  1A0P A;  3GR0 A;  4PRO C;  1XNQ C;  1N33 C;  3KXW A;  4BC7 A;  1MD9 A;  2VQE C;  4RM3 A;  3MGV A;  1LQL A;  5IFI A;  2VQF C;  3C29 A;  2D1T A;  4DG8 A;  4DR5 C;  4E0Y A;  2BJO A;  1XHJ A;  2UUB C;  3DHV A;  2XR1 A;  4JI0 C;  1WCJ A;  2MMA B;  1I94 C;  1ZB9 A;  3CW8 X;  4RMN A;  4DV0 C;  2CU6 A;  3T1Y C; 
#chains in the Genus database with same CATH homology
 5DCF A;  2A3V A;  1Z19 A;  1Q3V A;  1M6X A;  1KBU A;  1MA7 A;  2HOF A;  4DKS A;  1XNS A;  1A0P A;  3VCF A;  4A8E A;  3C28 A;  3UXU A;  1OUQ A;  3MGV A;  3CRX A;  1XO0 A;  1DRG A;  1NZB A;  1P7D A;  1P4E C;  3C29 A;  1CRX A;  3NKH A;  2CRX A;  1P4E A;  1AE9 A;  1F44 A;  5CRX A;  5C6K A;  1PVP A;  1PVR A;  1Q3U A;  1PVQ A;  5DOR A;  2HOI A;  4CRX A;  1FLO A;  1M6X C;  1Z1B A;  1AIH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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