1M6XC

Flpe-holliday junction complex
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
molecule keywords Symmetrized FRT site
total genus 125
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xC01
1M6XC 1Q3VA 1AIHA 1F44A 1Z1BA 1Q3UA 3CRXA 1CRXA 5DORA 3C28A 1PVQA 1PVPA 1NZBA 5CRXA 1KBUA 5C6KA 4DKSA 1MA7A 1A0PA 2CRXA 5DCFA 1AE9A 1P4EC 1XNSA 3MGVA 1Z19A 3VCFA 2HOIA 1P4EA 1FLOA 1M6XA 3NKHA 1OUQA 3C29A 1DRGA 4A8EA 1XO0A 2A3VA 2HOFA 1P7DA 4CRXA 3UXUA 1PVRA
chains in the Genus database with same CATH superfamily
4HPVA 1AMUA 1FJGC 4LF4C 1Q3UA 3ETOA 1HNXC 3AF5A 4NXNC 1PVQA 1PG3A 3CW8X 1O93A 3FCEA 4DR4C 3A4IA 4DCUA 4K0KC 5GTDA 3JAMD 2WD9A 3KXWA 4K0BA 1UWDA 1MKYA 3CQ3A 3E7WA 5A1GA 2VSQA 3SO4A 2E7GA 1YJ7A 3ETCA 5BURA 1XNRC 4IR7A 5AE2A 2E0GA 5ADZA 1PVPA 5BSRA 2XR1A 2CRXA 2DHMA 5LMNC 1NY8A 3CW9A 4LE5A 4PUHA 4KTTA 4BBYA 3IMLA 4LF8C 5DV9A 4TPSB 4ACOA 2P2QA 1Q3VA 2PN2A 1BA3A 2CXCA 3GR1A 1PA4A 1CRXA 2EGTA 2Y4NA 4DCVA 4ZJZA 5LCIA 2E8FA 4E0ZA 1KBUA 4KTVA 5C6KA 4DR2C 2HHHC 1P4EC 3H2TA 1Z19A 1WCJA 4PUGA 5BSMA 3UEBA 4DUYC 3T79A 2P20A 3NI2A 4DR7C 3PROC 4DCTA 2E8EA 4CRXA 3NYQA 3IEVA 2Z51A 3S82A 5IFIA 1AIHA 4EATA 3CRXA 2Y27A 3TUFA 1USPB 5KYVA 4FTFA 2YCBA 4NOZA 4JI1C 4DKSA 1MA7A 1UKKA 1AE9A 1V60A 2NCLA 4G37A 2DPLA 3LNVA 4GS5A 1P4EA 4XX2A 1XNQC 2VQEC 3TDEA 5KYTA 3NPDA 2PROA 3IPLA 1EGAA 3A26A 4R1MA 4LFCC 1NYEA 4R0MA 2P2JA 4PHTA 1QWIA 1IBKC 4U5YD 4BC9A 3J81D 4I9GA 5BUSA 1FLOA 1IBLC 3C29A 4DUZC 4GKJC 3L8CA 4OYCA 4LFAC 1VEHA 4JI0C 4RLFA 2ATWA 3E7XA 5BR8C 3K6RA 4PROC 1VLAA 5IWAC 4BSZA 4DV1C 4G1IA 3CQ2A 2ZZMA 5IT9D 1A0PA 2V6EA 2UXCC 3FCCA 4MH4A 1O92A 5BUQA 2PT7G 3N54B 2QVXX 4FUTA 3NKHA 4GKKC 3I07A 2AYAA 2KDNA 2OBVA 3TQIA 5K85A 2QVZX 2BH1X 4DV3C 4LF6C 4DG8A 1JOSA 4JYAC 3UX3A 2ASBA 1O9TA 2Y4OA 5DCFA 3UX2A 2V7BA 5AE1A 5T8SA 3DHVA 1T5DX 2A3VA 1WF3A 4LF5C 4F43A 4NDNA 4ODJA 3L95X 4DV0C 5BSTA 4NXMC 1HR0C 2P2BA 3T1YC 4L7IA 2E5LC 5DORA 3C28A 3GR0A 4LFBC 5CRXA 3DLPX 4OXIA 1K0RA 2P2MA 1XNSA 1V25A 3VCFA 2HOIA 1LQLA 4G36A 4I9FA 2OO4A 1HH2P 3A9UA 1DRGA 1XS3A 1LCIA 1QM4A 2DYJA 1WH9A 3A25A 1M6XC 2HJGA 2YX1A 2CY1A 4ZLPA 4DCSA 2D1TA 4DV7C 1N32C 4LF7C 3OTOC 3DAYA 4DR5C 5LMUC 1KKGA 2M5HA 2MMAB 1J5EC 5BSUA 4X62C 4PZPA 3UOWA 4B3SC 2KZFA 1M6XA 4E0JA 1ULTA 5A19A 2D1QA 2UUAC 4D4GA 2F4VC 1ZB8A 4GXQA 3VNRA 1MD9A 1XHJA 4E0PA 4JI2C 2CU6A 4DR1C 2M5OA 3AF6A 1XRBA 3GKUA 3LAXA 4JI7C 3G7SA 4RMNA 2YWCA 1MDFA 5AE3A 1I94C 4L4QA 3EERA 1RY2A 4E0GA 4PUIA 4D57A 3CJEA 5E7QA 2UXDC 3LGXA 3CQ1A 2QVYX 1IB8A 2YWBA 4BC7A 3MGVA 4JV5C 1N2FA 5CZVA 2HOFA 3PESA 1IBMC 3LUSA 1N33C 3AY0A 4R1LA 2D28C 1XMQC 3GPCA 1N34C 2UUBC 2D1RA 3N2QA 2JMPA 4D56A 3T1HC 4WV3A 3I08A 4GXRA 3R9WA 3RG2A 2ZM6C 2OPLB 4X64C 1OUQA 3IEUA 1P7DA 2QL8A 4F41A 1ML8A 4X65C 3NYRA 3R44A 4OX9C 1F44A 1PU1A 3VNSA 2E8CA 1HNWC 2P2FA 2BJOA 3J80D 2D1SA 2D27A 2ZZNA 1MXBA 1P7LA 2WP0C 4JI4C 1ZB9A 4AQYC 4JI8C 5BSWA 5KEIA 3LNOA 1USPA 4B3RC 1XMOC 5H9UA 4JI6C 2P02A 2D7VA 4B3TC 4MTNA 4DR6C 3TR3A 1MXCA 4IZ6A 1O90A 1HNZC 4DR3C 4RLQA 3EQ6A 4L2ZA 4JI5C 4B3MC 1XRCA 1FUGA 3SQIA 1T5HX 5FLXD 4E0YA 4DV6C 4D4IA 4FUQA 4DG9A 4A8EA 1GPMA 3VNQA 3B7WA 4RM2A 4BCAA 5A1IA 5BSVA 3O2EA 1TH5A 3C5EA 4RVOA 4YHHC 4X66C 1NZBA 4DV2C 3A9VA 3UZ0A 4RVNA 4ISBA 4DWPA 5K8FA 4DV4C 4JM1A 2VZEA 4RM3A 2KZ0A 5JRHA 1L2FA 1XO0A 2QW0X 1N36C 3UXUA 2MCQA 5T8TA 4DV5C 4LF9C 2OPLA 1Z1BA 4YY3C 2ONFA 2UUCC 3R9XA 2MM9A 3PBKA 1PG4A 1V26A 4KHPC 2UXBC 5CZXA 1MDBA 5A2QD 4E10A 2VQFC 4JI3C 1MXAA 3RV2A 1XRAA 2UU9C 4WS9A 1RG9A 2JNVA 1PVRA
chains in the Genus database with same CATH topology
1M6XC 1Q3VA 1AIHA 1F44A 1Z1BA 1Q3UA 3CRXA 1CRXA 5DORA 3C28A 1PVQA 1PVPA 1NZBA 5CRXA 1KBUA 5C6KA 4DKSA 1MA7A 1A0PA 2CRXA 5DCFA 1AE9A 1P4EC 1XNSA 3MGVA 1Z19A 3VCFA 2HOIA 1P4EA 1FLOA 1M6XA 3NKHA 1OUQA 3C29A 1DRGA 4A8EA 1XO0A 2A3VA 2HOFA 1P7DA 4CRXA 3UXUA 1PVRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M6X C;  1Q3V A;  1AIH A;  1F44 A;  1Z1B A;  1Q3U A;  3CRX A;  1CRX A;  5DOR A;  3C28 A;  1PVQ A;  1PVP A;  1NZB A;  5CRX A;  1KBU A;  5C6K A;  4DKS A;  1MA7 A;  1A0P A;  2CRX A;  5DCF A;  1AE9 A;  1P4E C;  1XNS A;  3MGV A;  1Z19 A;  3VCF A;  2HOI A;  1P4E A;  1FLO A;  1M6X A;  3NKH A;  1OUQ A;  3C29 A;  1DRG A;  4A8E A;  1XO0 A;  2A3V A;  2HOF A;  1P7D A;  4CRX A;  3UXU A;  1PVR A; 
#chains in the Genus database with same CATH topology
 4HPV A;  1AMU A;  1FJG C;  4LF4 C;  1Q3U A;  3ETO A;  1HNX C;  3AF5 A;  4NXN C;  1PVQ A;  1PG3 A;  3CW8 X;  1O93 A;  3FCE A;  4DR4 C;  3A4I A;  4DCU A;  4K0K C;  5GTD A;  3JAM D;  2WD9 A;  3KXW A;  4K0B A;  1UWD A;  1MKY A;  3CQ3 A;  3E7W A;  5A1G A;  2VSQ A;  3SO4 A;  2E7G A;  1YJ7 A;  3ETC A;  5BUR A;  1XNR C;  4IR7 A;  5AE2 A;  2E0G A;  5ADZ A;  1PVP A;  5BSR A;  2XR1 A;  2CRX A;  2DHM A;  5LMN C;  1NY8 A;  3CW9 A;  4LE5 A;  4PUH A;  4KTT A;  4BBY A;  3IML A;  4LF8 C;  5DV9 A;  4TPS B;  4ACO A;  2P2Q A;  1Q3V A;  2PN2 A;  1BA3 A;  2CXC A;  3GR1 A;  1PA4 A;  1CRX A;  2EGT A;  2Y4N A;  4DCV A;  4ZJZ A;  5LCI A;  2E8F A;  4E0Z A;  1KBU A;  4KTV A;  5C6K A;  4DR2 C;  2HHH C;  1P4E C;  3H2T A;  1Z19 A;  1WCJ A;  4PUG A;  5BSM A;  3UEB A;  4DUY C;  3T79 A;  2P20 A;  3NI2 A;  4DR7 C;  3PRO C;  4DCT A;  2E8E A;  4CRX A;  3NYQ A;  3IEV A;  2Z51 A;  3S82 A;  5IFI A;  1AIH A;  4EAT A;  3CRX A;  2Y27 A;  3TUF A;  1USP B;  5KYV A;  4FTF A;  2YCB A;  4NOZ A;  4JI1 C;  4DKS A;  1MA7 A;  1UKK A;  1AE9 A;  1V60 A;  2NCL A;  4G37 A;  2DPL A;  3LNV A;  4GS5 A;  1P4E A;  4XX2 A;  1XNQ C;  2VQE C;  3TDE A;  5KYT A;  3NPD A;  2PRO A;  3IPL A;  1EGA A;  3A26 A;  4R1M A;  4LFC C;  1NYE A;  4R0M A;  2P2J A;  4PHT A;  1QWI A;  1IBK C;  4U5Y D;  4BC9 A;  3J81 D;  4I9G A;  5BUS A;  1FLO A;  1IBL C;  3C29 A;  4DUZ C;  4GKJ C;  3L8C A;  4OYC A;  4LFA C;  1VEH A;  4JI0 C;  4RLF A;  2ATW A;  3E7X A;  5BR8 C;  3K6R A;  4PRO C;  1VLA A;  5IWA C;  4BSZ A;  4DV1 C;  4G1I A;  3CQ2 A;  2ZZM A;  5IT9 D;  1A0P A;  2V6E A;  2UXC C;  3FCC A;  4MH4 A;  1O92 A;  5BUQ A;  2PT7 G;  3N54 B;  2QVX X;  4FUT A;  3NKH A;  4GKK C;  3I07 A;  2AYA A;  2KDN A;  2OBV A;  3TQI A;  5K85 A;  2QVZ X;  2BH1 X;  4DV3 C;  4LF6 C;  4DG8 A;  1JOS A;  4JYA C;  3UX3 A;  2ASB A;  1O9T A;  2Y4O A;  5DCF A;  3UX2 A;  2V7B A;  5AE1 A;  5T8S A;  3DHV A;  1T5D X;  2A3V A;  1WF3 A;  4LF5 C;  4F43 A;  4NDN A;  4ODJ A;  3L95 X;  4DV0 C;  5BST A;  4NXM C;  1HR0 C;  2P2B A;  3T1Y C;  4L7I A;  2E5L C;  5DOR A;  3C28 A;  3GR0 A;  4LFB C;  5CRX A;  3DLP X;  4OXI A;  1K0R A;  2P2M A;  1XNS A;  1V25 A;  3VCF A;  2HOI A;  1LQL A;  4G36 A;  4I9F A;  2OO4 A;  1HH2 P;  3A9U A;  1DRG A;  1XS3 A;  1LCI A;  1QM4 A;  2DYJ A;  1WH9 A;  3A25 A;  1M6X C;  2HJG A;  2YX1 A;  2CY1 A;  4ZLP A;  4DCS A;  2D1T A;  4DV7 C;  1N32 C;  4LF7 C;  3OTO C;  3DAY A;  4DR5 C;  5LMU C;  1KKG A;  2M5H A;  2MMA B;  1J5E C;  5BSU A;  4X62 C;  4PZP A;  3UOW A;  4B3S C;  2KZF A;  1M6X A;  4E0J A;  1ULT A;  5A19 A;  2D1Q A;  2UUA C;  4D4G A;  2F4V C;  1ZB8 A;  4GXQ A;  3VNR A;  1MD9 A;  1XHJ A;  4E0P A;  4JI2 C;  2CU6 A;  4DR1 C;  2M5O A;  3AF6 A;  1XRB A;  3GKU A;  3LAX A;  4JI7 C;  3G7S A;  4RMN A;  2YWC A;  1MDF A;  5AE3 A;  1I94 C;  4L4Q A;  3EER A;  1RY2 A;  4E0G A;  4PUI A;  4D57 A;  3CJE A;  5E7Q A;  2UXD C;  3LGX A;  3CQ1 A;  2QVY X;  1IB8 A;  2YWB A;  4BC7 A;  3MGV A;  4JV5 C;  1N2F A;  5CZV A;  2HOF A;  3PES A;  1IBM C;  3LUS A;  1N33 C;  3AY0 A;  4R1L A;  2D28 C;  1XMQ C;  3GPC A;  1N34 C;  2UUB C;  2D1R A;  3N2Q A;  2JMP A;  4D56 A;  3T1H C;  4WV3 A;  3I08 A;  4GXR A;  3R9W A;  3RG2 A;  2ZM6 C;  2OPL B;  4X64 C;  1OUQ A;  3IEU A;  1P7D A;  2QL8 A;  4F41 A;  1ML8 A;  4X65 C;  3NYR A;  3R44 A;  4OX9 C;  1F44 A;  1PU1 A;  3VNS A;  2E8C A;  1HNW C;  2P2F A;  2BJO A;  3J80 D;  2D1S A;  2D27 A;  2ZZN A;  1MXB A;  1P7L A;  2WP0 C;  4JI4 C;  1ZB9 A;  4AQY C;  4JI8 C;  5BSW A;  5KEI A;  3LNO A;  1USP A;  4B3R C;  1XMO C;  5H9U A;  4JI6 C;  2P02 A;  2D7V A;  4B3T C;  4MTN A;  4DR6 C;  3TR3 A;  1MXC A;  4IZ6 A;  1O90 A;  1HNZ C;  4DR3 C;  4RLQ A;  3EQ6 A;  4L2Z A;  4JI5 C;  4B3M C;  1XRC A;  1FUG A;  3SQI A;  1T5H X;  5FLX D;  4E0Y A;  4DV6 C;  4D4I A;  4FUQ A;  4DG9 A;  4A8E A;  1GPM A;  3VNQ A;  3B7W A;  4RM2 A;  4BCA A;  5A1I A;  5BSV A;  3O2E A;  1TH5 A;  3C5E A;  4RVO A;  4YHH C;  4X66 C;  1NZB A;  4DV2 C;  3A9V A;  3UZ0 A;  4RVN A;  4ISB A;  4DWP A;  5K8F A;  4DV4 C;  4JM1 A;  2VZE A;  4RM3 A;  2KZ0 A;  5JRH A;  1L2F A;  1XO0 A;  2QW0 X;  1N36 C;  3UXU A;  2MCQ A;  5T8T A;  4DV5 C;  4LF9 C;  2OPL A;  1Z1B A;  4YY3 C;  2ONF A;  2UUC C;  3R9X A;  2MM9 A;  3PBK A;  1PG4 A;  1V26 A;  4KHP C;  2UXB C;  5CZX A;  1MDB A;  5A2Q D;  4E10 A;  2VQF C;  4JI3 C;  1MXA A;  3RV2 A;  1XRA A;  2UU9 C;  4WS9 A;  1RG9 A;  2JNV A;  1PVR A; 
#chains in the Genus database with same CATH homology
 1M6X C;  1Q3V A;  1AIH A;  1F44 A;  1Z1B A;  1Q3U A;  3CRX A;  1CRX A;  5DOR A;  3C28 A;  1PVQ A;  1PVP A;  1NZB A;  5CRX A;  1KBU A;  5C6K A;  4DKS A;  1MA7 A;  1A0P A;  2CRX A;  5DCF A;  1AE9 A;  1P4E C;  1XNS A;  3MGV A;  1Z19 A;  3VCF A;  2HOI A;  1P4E A;  1FLO A;  1M6X A;  3NKH A;  1OUQ A;  3C29 A;  1DRG A;  4A8E A;  1XO0 A;  2A3V A;  2HOF A;  1P7D A;  4CRX A;  3UXU A;  1PVR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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