1M6XC

Flpe-holliday junction complex
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ligase, lyase/dna
molecule keywords Symmetrized FRT site
publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 125
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xC01
3C29A 3NKHA 1P7DA 5DORA 1P4EA 5DCFA 3VCFA 3UXUA 4DKSA 1Q3VA 1Z1BA 3MGVA 1XO0A 2A3VA 1F44A 2CRXA 1OUQA 1Q3UA 1XNSA 1M6XC 2HOIA 1DRGA 1AE9A 1AIHA 3CRXA 4CRXA 2HOFA 1PVPA 1FLOA 5C6KA 1PVRA 1M6XA 1KBUA 1A0PA 3C28A 1Z19A 1PVQA 1NZBA 1CRXA 1P4EC 5CRXA 4A8EA 1MA7A
chains in the Genus database with same CATH superfamily
4BBYA 2P2FA 1FJGC 2WP0C 3K6RA 1PA4A 2YWBA 1IBLC 5BSUA 4LFAC 4GKJC 3TQIA 4ODJA 2P20A 2NCLA 4DR3C 1FLOA 2ZZNA 1XNQC 3CJEA 3E7WA 4I9GA 5IWAC 3PROC 1NZBA 1IBKC 3LUSA 4PUIA 3ETCA 2PROA 2P2QA 1XRCA 4D4IA 2CU6A 5A1GA 2QVYX 3UEBA 3R9XA 1XRBA 4B3TC 4X65C 2VZEA 2VQFC 4LFCC 3GR0A 3S82A 4JI4C 4F43A 2E8EA 3CQ1A 1O92A 3LNOA 4ACOA 1P4EC 1XHJA 1WCJA 4BCAA 4DR5C 1XMQC 3UZ0A 3MGVA 1L2FA 5GTDA 2QVZX 4XX2A 1LQLA 1DRGA 2KDNA 5AE2A 1YJ7A 2HOFA 3VNSA 4L4QA 1HR0C 4LF9C 1MD9A 4FUTA 1KBUA 2Y27A 5BSTA 1RY2A 4RM2A 3SO4A 1IBMC 5KYTA 2ATWA 1P4EA 2ONFA 3UXUA 3A4IA 3LNVA 1O93A 2MMAB 2QW0X 2BJOA 1AIHA 4LE5A 4RM3A 3J81D 2MM9A 1A0PA 4ISBA 4JI0C 3AF6A 2WD9A 4G36A 2E8CA 1USPA 4IZ6A 2UUCC 3A26A 3RG2A 2PN2A 2P2MA 5BUQA 2DYJA 4X64C 2EGTA 4DCTA 2P2JA 3TR3A 5BSWA 4PUGA 1PVPA 1V25A 1LCIA 5BSVA 4NOZA 2JNVA 1NYEA 2ZM6C 3A25A 3TUFA 4E0GA 4DR4C 3PBKA 1VLAA 2E8FA 4BSZA 3C29A 1MXAA 2OPLA 2VQEC 2P2BA 4DKSA 4DG8A 1PG4A 3N54B 4X62C 2UXDC 4DV3C 5AE1A 1XNSA 4WS9A 1AE9A 3NPDA 4K0BA 1N33C 1XS3A 4OX9C 4R1LA 3G7SA 1IB8A 2CXCA 5CZXA 4R0MA 2UUAC 4DR1C 1UKKA 1USPB 4LFBC 1MDBA 2MCQA 4RLFA 3C5EA 2V7BA 5DORA 4I9FA 1Q3VA 4E0PA 5BUSA 1Z1BA 4YHHC 5KYVA 3CQ2A 3DHVA 5T8TA 1PG3A 4R1MA 3L8CA 1O90A 1T5DX 1ML8A 4OYCA 2D7VA 2ASBA 1PVRA 4FUQA 4DV0C 3AF5A 4G1IA 5H9UA 4WV3A 5CRXA 2OPLB 4JM1A 4KTTA 1K0RA 1UWDA 5LMUC 3NKHA 4RLQA 3SQIA 1GPMA 3FCCA 3KXWA 3OTOC 1XO0A 2D1TA 4NDNA 2PT7G 1OUQA 5A19A 4DV4C 4X66C 3R44A 2JMPA 4MTNA 4DG9A 4K0KC 2D1RA 2D28C 4E0ZA 1MXCA 1CRXA 4IR7A 2AYAA 4DR6C 5CZVA 1P7DA 4ZJZA 3NYRA 4DV1C 2D27A 3IMLA 5FLXD 1VEHA 1JOSA 2HHHC 4DUYC 1HNWC 4LF4C 4DR2C 1V60A 2QL8A 4U5YD 1MKYA 4JI7C 1PVQA 5JRHA 2E7GA 3VNQA 3UOWA 2YWCA 3E7XA 3GR1A 4DCVA 1ULTA 2QVXX 1AMUA 4E10A 1XMOC 1HNXC 3NI2A 4EATA 5A2QD 3PESA 2XR1A 5A1IA 4DWPA 2P02A 2HOIA 3GKUA 4FTFA 2M5HA 4MH4A 4KHPC 4GS5A 3C28A 2HJGA 4LF7C 5IFIA 4JI5C 3O2EA 3A9VA 1HH2P 4D4GA 5K85A 4JI8C 4JI2C 2UXBC 4PHTA 4E0JA 2E5LC 4RVOA 4LF6C 3T1HC 4CRXA 2M5OA 3L95X 1BA3A 4JYAC 3AY0A 4TPSB 3RV2A 2D1SA 4OXIA 4PROC 3T1YC 4GKKC 4DV6C 4DCUA 3VNRA 3ETOA 4BC9A 4JV5C 5ADZA 5BR8C 3LGXA 2CY1A 3I07A 5K8FA 3CQ3A 1V26A 3EQ6A 1RG9A 4KTVA 1I94C 5AE3A 1MDFA 1N2FA 4DV5C 4F41A 2KZFA 1MA7A 3DAYA 3UX2A 3IEVA 1XRAA 4GXQA 3LAXA 4HPVA 3DLPX 2A3VA 2CRXA 1MXBA 5LMNC 2VSQA 4DV7C 3N2QA 2V6EA 5E7QA 1WH9A 3FCEA 4JI6C 4B3RC 4RMNA 5C6KA 4B3SC 2Y4OA 2DPLA 2OO4A 5BURA 4A8EA 2YX1A 4AQYC 5KEIA 1N36C 1WF3A 2DHMA 1NY8A 1N34C 5DCFA 3VCFA 4DR7C 2E0GA 1KKGA 4PZPA 4DCSA 4ZLPA 3R9WA 1P7LA 1PU1A 5IT9D 4DUZC 1HNZC 2UUBC 3CW9A 1N32C 4DV2C 4LF5C 4LF8C 4PUHA 3B7WA 2Y4NA 1EGAA 3J80D 2D1QA 3JAMD 5LCIA 4B3MC 4L2ZA 4L7IA 3EERA 1TH5A 2UU9C 1Q3UA 1M6XC 1QM4A 5BSRA 1XNRC 4JI1C 3CRXA 4RVNA 5BSMA 2ZZMA 1ZB8A 3I08A 3GPCA 3IEUA 1Z19A 3T79A 4GXRA 1O9TA 2BH1X 4NXMC 5T8SA 2KZ0A 4G37A 5DV9A 3UX3A 2F4VC 4NXNC 4YY3C 1F44A 4D57A 4D56A 3TDEA 3CW8X 3A9UA 2Z51A 4BC7A 1ZB9A 1FUGA 2YCBA 3NYQA 1QWIA 1J5EC 1M6XA 4JI3C 2UXCC 2OBVA 4E0YA 1T5HX 3IPLA 3H2TA
chains in the Genus database with same CATH topology
3C29A 3NKHA 1P7DA 5DORA 1P4EA 5DCFA 3VCFA 3UXUA 4DKSA 1Q3VA 1Z1BA 3MGVA 1XO0A 2A3VA 1F44A 2CRXA 1OUQA 1Q3UA 1XNSA 1M6XC 2HOIA 1DRGA 1AE9A 1AIHA 3CRXA 4CRXA 2HOFA 1PVPA 1FLOA 5C6KA 1PVRA 1M6XA 1KBUA 1A0PA 3C28A 1Z19A 1PVQA 1NZBA 1CRXA 1P4EC 5CRXA 4A8EA 1MA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C29 A;  3NKH A;  1P7D A;  5DOR A;  1P4E A;  5DCF A;  3VCF A;  3UXU A;  4DKS A;  1Q3V A;  1Z1B A;  3MGV A;  1XO0 A;  2A3V A;  1F44 A;  2CRX A;  1OUQ A;  1Q3U A;  1XNS A;  1M6X C;  2HOI A;  1DRG A;  1AE9 A;  1AIH A;  3CRX A;  4CRX A;  2HOF A;  1PVP A;  1FLO A;  5C6K A;  1PVR A;  1M6X A;  1KBU A;  1A0P A;  3C28 A;  1Z19 A;  1PVQ A;  1NZB A;  1CRX A;  1P4E C;  5CRX A;  4A8E A;  1MA7 A; 
#chains in the Genus database with same CATH topology
 4BBY A;  2P2F A;  1FJG C;  2WP0 C;  3K6R A;  1PA4 A;  2YWB A;  1IBL C;  5BSU A;  4LFA C;  4GKJ C;  3TQI A;  4ODJ A;  2P20 A;  2NCL A;  4DR3 C;  1FLO A;  2ZZN A;  1XNQ C;  3CJE A;  3E7W A;  4I9G A;  5IWA C;  3PRO C;  1NZB A;  1IBK C;  3LUS A;  4PUI A;  3ETC A;  2PRO A;  2P2Q A;  1XRC A;  4D4I A;  2CU6 A;  5A1G A;  2QVY X;  3UEB A;  3R9X A;  1XRB A;  4B3T C;  4X65 C;  2VZE A;  2VQF C;  4LFC C;  3GR0 A;  3S82 A;  4JI4 C;  4F43 A;  2E8E A;  3CQ1 A;  1O92 A;  3LNO A;  4ACO A;  1P4E C;  1XHJ A;  1WCJ A;  4BCA A;  4DR5 C;  1XMQ C;  3UZ0 A;  3MGV A;  1L2F A;  5GTD A;  2QVZ X;  4XX2 A;  1LQL A;  1DRG A;  2KDN A;  5AE2 A;  1YJ7 A;  2HOF A;  3VNS A;  4L4Q A;  1HR0 C;  4LF9 C;  1MD9 A;  4FUT A;  1KBU A;  2Y27 A;  5BST A;  1RY2 A;  4RM2 A;  3SO4 A;  1IBM C;  5KYT A;  2ATW A;  1P4E A;  2ONF A;  3UXU A;  3A4I A;  3LNV A;  1O93 A;  2MMA B;  2QW0 X;  2BJO A;  1AIH A;  4LE5 A;  4RM3 A;  3J81 D;  2MM9 A;  1A0P A;  4ISB A;  4JI0 C;  3AF6 A;  2WD9 A;  4G36 A;  2E8C A;  1USP A;  4IZ6 A;  2UUC C;  3A26 A;  3RG2 A;  2PN2 A;  2P2M A;  5BUQ A;  2DYJ A;  4X64 C;  2EGT A;  4DCT A;  2P2J A;  3TR3 A;  5BSW A;  4PUG A;  1PVP A;  1V25 A;  1LCI A;  5BSV A;  4NOZ A;  2JNV A;  1NYE A;  2ZM6 C;  3A25 A;  3TUF A;  4E0G A;  4DR4 C;  3PBK A;  1VLA A;  2E8F A;  4BSZ A;  3C29 A;  1MXA A;  2OPL A;  2VQE C;  2P2B A;  4DKS A;  4DG8 A;  1PG4 A;  3N54 B;  4X62 C;  2UXD C;  4DV3 C;  5AE1 A;  1XNS A;  4WS9 A;  1AE9 A;  3NPD A;  4K0B A;  1N33 C;  1XS3 A;  4OX9 C;  4R1L A;  3G7S A;  1IB8 A;  2CXC A;  5CZX A;  4R0M A;  2UUA C;  4DR1 C;  1UKK A;  1USP B;  4LFB C;  1MDB A;  2MCQ A;  4RLF A;  3C5E A;  2V7B A;  5DOR A;  4I9F A;  1Q3V A;  4E0P A;  5BUS A;  1Z1B A;  4YHH C;  5KYV A;  3CQ2 A;  3DHV A;  5T8T A;  1PG3 A;  4R1M A;  3L8C A;  1O90 A;  1T5D X;  1ML8 A;  4OYC A;  2D7V A;  2ASB A;  1PVR A;  4FUQ A;  4DV0 C;  3AF5 A;  4G1I A;  5H9U A;  4WV3 A;  5CRX A;  2OPL B;  4JM1 A;  4KTT A;  1K0R A;  1UWD A;  5LMU C;  3NKH A;  4RLQ A;  3SQI A;  1GPM A;  3FCC A;  3KXW A;  3OTO C;  1XO0 A;  2D1T A;  4NDN A;  2PT7 G;  1OUQ A;  5A19 A;  4DV4 C;  4X66 C;  3R44 A;  2JMP A;  4MTN A;  4DG9 A;  4K0K C;  2D1R A;  2D28 C;  4E0Z A;  1MXC A;  1CRX A;  4IR7 A;  2AYA A;  4DR6 C;  5CZV A;  1P7D A;  4ZJZ A;  3NYR A;  4DV1 C;  2D27 A;  3IML A;  5FLX D;  1VEH A;  1JOS A;  2HHH C;  4DUY C;  1HNW C;  4LF4 C;  4DR2 C;  1V60 A;  2QL8 A;  4U5Y D;  1MKY A;  4JI7 C;  1PVQ A;  5JRH A;  2E7G A;  3VNQ A;  3UOW A;  2YWC A;  3E7X A;  3GR1 A;  4DCV A;  1ULT A;  2QVX X;  1AMU A;  4E10 A;  1XMO C;  1HNX C;  3NI2 A;  4EAT A;  5A2Q D;  3PES A;  2XR1 A;  5A1I A;  4DWP A;  2P02 A;  2HOI A;  3GKU A;  4FTF A;  2M5H A;  4MH4 A;  4KHP C;  4GS5 A;  3C28 A;  2HJG A;  4LF7 C;  5IFI A;  4JI5 C;  3O2E A;  3A9V A;  1HH2 P;  4D4G A;  5K85 A;  4JI8 C;  4JI2 C;  2UXB C;  4PHT A;  4E0J A;  2E5L C;  4RVO A;  4LF6 C;  3T1H C;  4CRX A;  2M5O A;  3L95 X;  1BA3 A;  4JYA C;  3AY0 A;  4TPS B;  3RV2 A;  2D1S A;  4OXI A;  4PRO C;  3T1Y C;  4GKK C;  4DV6 C;  4DCU A;  3VNR A;  3ETO A;  4BC9 A;  4JV5 C;  5ADZ A;  5BR8 C;  3LGX A;  2CY1 A;  3I07 A;  5K8F A;  3CQ3 A;  1V26 A;  3EQ6 A;  1RG9 A;  4KTV A;  1I94 C;  5AE3 A;  1MDF A;  1N2F A;  4DV5 C;  4F41 A;  2KZF A;  1MA7 A;  3DAY A;  3UX2 A;  3IEV A;  1XRA A;  4GXQ A;  3LAX A;  4HPV A;  3DLP X;  2A3V A;  2CRX A;  1MXB A;  5LMN C;  2VSQ A;  4DV7 C;  3N2Q A;  2V6E A;  5E7Q A;  1WH9 A;  3FCE A;  4JI6 C;  4B3R C;  4RMN A;  5C6K A;  4B3S C;  2Y4O A;  2DPL A;  2OO4 A;  5BUR A;  4A8E A;  2YX1 A;  4AQY C;  5KEI A;  1N36 C;  1WF3 A;  2DHM A;  1NY8 A;  1N34 C;  5DCF A;  3VCF A;  4DR7 C;  2E0G A;  1KKG A;  4PZP A;  4DCS A;  4ZLP A;  3R9W A;  1P7L A;  1PU1 A;  5IT9 D;  4DUZ C;  1HNZ C;  2UUB C;  3CW9 A;  1N32 C;  4DV2 C;  4LF5 C;  4LF8 C;  4PUH A;  3B7W A;  2Y4N A;  1EGA A;  3J80 D;  2D1Q A;  3JAM D;  5LCI A;  4B3M C;  4L2Z A;  4L7I A;  3EER A;  1TH5 A;  2UU9 C;  1Q3U A;  1M6X C;  1QM4 A;  5BSR A;  1XNR C;  4JI1 C;  3CRX A;  4RVN A;  5BSM A;  2ZZM A;  1ZB8 A;  3I08 A;  3GPC A;  3IEU A;  1Z19 A;  3T79 A;  4GXR A;  1O9T A;  2BH1 X;  4NXM C;  5T8S A;  2KZ0 A;  4G37 A;  5DV9 A;  3UX3 A;  2F4V C;  4NXN C;  4YY3 C;  1F44 A;  4D57 A;  4D56 A;  3TDE A;  3CW8 X;  3A9U A;  2Z51 A;  4BC7 A;  1ZB9 A;  1FUG A;  2YCB A;  3NYQ A;  1QWI A;  1J5E C;  1M6X A;  4JI3 C;  2UXC C;  2OBV A;  4E0Y A;  1T5H X;  3IPL A;  3H2T A; 
#chains in the Genus database with same CATH homology
 3C29 A;  3NKH A;  1P7D A;  5DOR A;  1P4E A;  5DCF A;  3VCF A;  3UXU A;  4DKS A;  1Q3V A;  1Z1B A;  3MGV A;  1XO0 A;  2A3V A;  1F44 A;  2CRX A;  1OUQ A;  1Q3U A;  1XNS A;  1M6X C;  2HOI A;  1DRG A;  1AE9 A;  1AIH A;  3CRX A;  4CRX A;  2HOF A;  1PVP A;  1FLO A;  5C6K A;  1PVR A;  1M6X A;  1KBU A;  1A0P A;  3C28 A;  1Z19 A;  1PVQ A;  1NZB A;  1CRX A;  1P4E C;  5CRX A;  4A8E A;  1MA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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