1M6XC

Flpe-holliday junction complex
Total Genus 125
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
125
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNSDITDIVSSLQLQFESNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKRASAVARTTTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Symmetrized FRT site
publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
total genus 125
structure length 399
sequence length 421
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF03930 Flp_N Recombinase Flp protein N-terminus
C PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xC02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xC01
4A8EA 1XNSA 1M6XC 3CRXA 3NKHA 1XO0A 1KBUA 1DRGA 1AIHA 2A3VA 5DORA 1M6XA 1Q3VA 1AE9A 3VCFA 4DKSA 1Z19A 1PVPA 1NZBA 5C6KA 1P4EC 1A0PA 2CRXA 1CRXA 1Z1BA 5DCFA 1PVQA 1P4EA 3UXUA 1F44A 4CRXA 2HOFA 3C29A 5CRXA 3MGVA 2HOIA 1P7DA 1FLOA 1OUQA 1MA7A 3C28A 1Q3UA 1PVRA
chains in the Genus database with same CATH superfamily
4DR4C 1T5HX 1N2FA 1V60A 3SO4A 5BUQA 2F4VC 2E7GA 4GKKC 4B3MC 1L2FA 3B7WA 2ZM6C 1WH9A 1LQLA 3A25A 3PROC 2ZZNA 2HHHC 1K0RA 3R9WA 4B3SC 1FLOA 4ODJA 2MM9A 4IR7A 1RY2A 3UX2A 5FLXD 2OBVA 3GR0A 1AIHA 5LCIA 1V26A 2UXDC 3CW9A 3K6RA 4K0BA 3I07A 2JMPA 1J5EC 4DCTA 1PG3A 4G36A 3TR3A 4F43A 2OPLA 5BURA 1WCJA 3C28A 2BJOA 2E5LC 2ATWA 4JYAC 2A3VA 5DORA 1O9TA 4GS5A 2E8FA 2D1QA 4DV1C 4F41A 5CZXA 5DCFA 5LMNC 4DR5C 4I9FA 5GTDA 4OXIA 2BH1X 3J80D 2HOFA 4BC9A 5BSMA 1XNQC 1FUGA 2KZFA 3CW8X 3VNRA 3CQ3A 3PBKA 4LFAC 2YWCA 5ADZA 4JI3C 2P2QA 3SQIA 1IB8A 5DV9A 3H2TA 1O92A 2CY1A 2VQFC 2MCQA 5AE1A 2UUAC 4WV3A 4D4IA 4DV6C 3UOWA 1WF3A 4DV7C 1N36C 4BC7A 5K8FA 4DUZC 5BSRA 1USPA 4IZ6A 2CXCA 4KTTA 4AQYC 3S82A 5KYVA 5A1IA 4NXNC 4X66C 2UUBC 1P4EC 4LF6C 3CQ2A 3R9XA 1Z1BA 2OPLB 1VEHA 3AF5A 2Y4OA 2QW0X 4GXRA 1XMQC 1EGAA 4GXQA 5IT9D 4LFBC 2E0GA 3DHVA 4PUGA 3JAMD 1V25A 2P20A 5T8SA 2QVZX 1XRBA 1PU1A 5BSWA 5BSTA 4DR7C 4LF8C 4BSZA 1HH2P 1MXCA 4NXMC 3FCCA 5T8TA 4D56A 4X62C 2CRXA 1CRXA 1XMOC 3LGXA 2PT7G 3GKUA 3PESA 4DCUA 4B3TC 4LE5A 1HR0C 4R1MA 1O90A 2D1TA 1P7DA 2D7VA 5AE2A 2VQEC 4JI7C 1XS3A 4DCVA 2D27A 1NZBA 4LF7C 4JI4C 1IBLC 3C5EA 1ULTA 1PA4A 2UU9C 3C29A 3IEUA 1USPB 2QVYX 1IBKC 4RVOA 2HJGA 1BA3A 4L7IA 4PUIA 2VSQA 1KBUA 2V6EA 1AMUA 1UKKA 3AF6A 3J81D 4L4QA 1Z19A 2UXBC 3FCEA 4U5YD 4DWPA 3ETCA 4E10A 3RV2A 1GPMA 4JI2C 4DV0C 1NYEA 1MXBA 3N2QA 4EATA 4WS9A 4NDNA 2V7BA 5K85A 1YJ7A 3A26A 5BR8C 2P2MA 1MA7A 4E0GA 2CU6A 4GKJC 4DG9A 4E0YA 2M5OA 3NPDA 1P7LA 1IBMC 1PG4A 3EERA 4FUTA 5H9UA 4K0KC 2M5HA 3RG2A 2DHMA 4X65C 4JM1A 4DV4C 2Z51A 2NCLA 1QM4A 4LF4C 1P4EA 4FTFA 4I9GA 3IPLA 3TDEA 3EQ6A 4E0ZA 3I08A 4D4GA 1OUQA 1XNRC 2YWBA 1I94C 1XNSA 3NKHA 2QVXX 2D1SA 5BUSA 2OO4A 2PROA 3GR1A 4JI1C 4YHHC 3R44A 1Q3VA 4PHTA 4DKSA 4DCSA 5KEIA 3VNQA 4R0MA 3IMLA 2P2JA 4RMNA 4BCAA 4DV3C 1N34C 5IWAC 2DPLA 5A2QD 1F44A 4RLQA 2JNVA 3L95X 2UUCC 1XRAA 2D28C 3MGVA 3A9VA 1XHJA 1QWIA 3UEBA 4TPSB 4LFCC 4NOZA 2WP0C 1M6XC 1MKYA 4DR1C 4JV5C 4ZJZA 4G37A 3A4IA 1JOSA 4RM2A 3IEVA 1PVQA 1MD9A 2P02A 2KDNA 4KTVA 1KKGA 4LF9C 2MMAB 3E7XA 4RLFA 1Q3UA 2KZ0A 5JRHA 2DYJA 1XO0A 2AYAA 1TH5A 1MXAA 2D1RA 4PROC 3GPCA 5KYTA 3LUSA 4OX9C 1UWDA 3VNSA 5BSUA 3TQIA 4ZLPA 2Y27A 2VZEA 4DG8A 4DV5C 3UX3A 1PVRA 4ISBA 2YCBA 4L2ZA 4X64C 1N32C 3NI2A 4KHPC 3DAYA 1PVPA 1MDFA 4JI6C 4E0PA 1ML8A 4DR3C 1ZB8A 3LAXA 3T1HC 5E7QA 5IFIA 4MTNA 1VLAA 4B3RC 3T79A 3TUFA 5A19A 1HNZC 4DUYC 3OTOC 3NYQA 3UZ0A 1XRCA 2E8EA 2YX1A 4JI0C 2UXCC 3N54B 5BSVA 3LNVA 4BBYA 3VCFA 1NY8A 5C6KA 4JI8C 2ONFA 4LF5C 4DV2C 3CJEA 3G7SA 5AE3A 2QL8A 1HNXC 3KXWA 2E8CA 2PN2A 3A9UA 3NYRA 1DRGA 1N33C 1M6XA 2ASBA 2EGTA 2XR1A 1RG9A 4PZPA 4PUHA 4YY3C 1FJGC 1O93A 1HNWC 3AY0A 4CRXA 5A1GA 5CRXA 4HPVA 1LCIA 2WD9A 3LNOA 5LMUC 3DLPX 5CZVA 4OYCA 2HOIA 4A8EA 4E0JA 4XX2A 3CQ1A 3L8CA 4D57A 3CRXA 2Y4NA 4RM3A 4DR2C 2P2FA 4R1LA 2ZZMA 1AE9A 4ACOA 3ETOA 1A0PA 4RVNA 3T1YC 4MH4A 3UXUA 3O2EA 4G1IA 1ZB9A 1T5DX 4JI5C 2P2BA 4DR6C 3E7WA 1MDBA 4FUQA
chains in the Genus database with same CATH topology
4A8EA 1XNSA 1M6XC 3CRXA 3NKHA 1XO0A 1KBUA 1DRGA 1AIHA 2A3VA 5DORA 1M6XA 1Q3VA 1AE9A 3VCFA 4DKSA 1Z19A 1PVPA 1NZBA 5C6KA 1P4EC 1A0PA 2CRXA 1CRXA 1Z1BA 5DCFA 1PVQA 1P4EA 3UXUA 1F44A 4CRXA 2HOFA 3C29A 5CRXA 3MGVA 2HOIA 1P7DA 1FLOA 1OUQA 1MA7A 3C28A 1Q3UA 1PVRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A8E A;  1XNS A;  1M6X C;  3CRX A;  3NKH A;  1XO0 A;  1KBU A;  1DRG A;  1AIH A;  2A3V A;  5DOR A;  1M6X A;  1Q3V A;  1AE9 A;  3VCF A;  4DKS A;  1Z19 A;  1PVP A;  1NZB A;  5C6K A;  1P4E C;  1A0P A;  2CRX A;  1CRX A;  1Z1B A;  5DCF A;  1PVQ A;  1P4E A;  3UXU A;  1F44 A;  4CRX A;  2HOF A;  3C29 A;  5CRX A;  3MGV A;  2HOI A;  1P7D A;  1FLO A;  1OUQ A;  1MA7 A;  3C28 A;  1Q3U A;  1PVR A; 
#chains in the Genus database with same CATH topology
 4DR4 C;  1T5H X;  1N2F A;  1V60 A;  3SO4 A;  5BUQ A;  2F4V C;  2E7G A;  4GKK C;  4B3M C;  1L2F A;  3B7W A;  2ZM6 C;  1WH9 A;  1LQL A;  3A25 A;  3PRO C;  2ZZN A;  2HHH C;  1K0R A;  3R9W A;  4B3S C;  1FLO A;  4ODJ A;  2MM9 A;  4IR7 A;  1RY2 A;  3UX2 A;  5FLX D;  2OBV A;  3GR0 A;  1AIH A;  5LCI A;  1V26 A;  2UXD C;  3CW9 A;  3K6R A;  4K0B A;  3I07 A;  2JMP A;  1J5E C;  4DCT A;  1PG3 A;  4G36 A;  3TR3 A;  4F43 A;  2OPL A;  5BUR A;  1WCJ A;  3C28 A;  2BJO A;  2E5L C;  2ATW A;  4JYA C;  2A3V A;  5DOR A;  1O9T A;  4GS5 A;  2E8F A;  2D1Q A;  4DV1 C;  4F41 A;  5CZX A;  5DCF A;  5LMN C;  4DR5 C;  4I9F A;  5GTD A;  4OXI A;  2BH1 X;  3J80 D;  2HOF A;  4BC9 A;  5BSM A;  1XNQ C;  1FUG A;  2KZF A;  3CW8 X;  3VNR A;  3CQ3 A;  3PBK A;  4LFA C;  2YWC A;  5ADZ A;  4JI3 C;  2P2Q A;  3SQI A;  1IB8 A;  5DV9 A;  3H2T A;  1O92 A;  2CY1 A;  2VQF C;  2MCQ A;  5AE1 A;  2UUA C;  4WV3 A;  4D4I A;  4DV6 C;  3UOW A;  1WF3 A;  4DV7 C;  1N36 C;  4BC7 A;  5K8F A;  4DUZ C;  5BSR A;  1USP A;  4IZ6 A;  2CXC A;  4KTT A;  4AQY C;  3S82 A;  5KYV A;  5A1I A;  4NXN C;  4X66 C;  2UUB C;  1P4E C;  4LF6 C;  3CQ2 A;  3R9X A;  1Z1B A;  2OPL B;  1VEH A;  3AF5 A;  2Y4O A;  2QW0 X;  4GXR A;  1XMQ C;  1EGA A;  4GXQ A;  5IT9 D;  4LFB C;  2E0G A;  3DHV A;  4PUG A;  3JAM D;  1V25 A;  2P20 A;  5T8S A;  2QVZ X;  1XRB A;  1PU1 A;  5BSW A;  5BST A;  4DR7 C;  4LF8 C;  4BSZ A;  1HH2 P;  1MXC A;  4NXM C;  3FCC A;  5T8T A;  4D56 A;  4X62 C;  2CRX A;  1CRX A;  1XMO C;  3LGX A;  2PT7 G;  3GKU A;  3PES A;  4DCU A;  4B3T C;  4LE5 A;  1HR0 C;  4R1M A;  1O90 A;  2D1T A;  1P7D A;  2D7V A;  5AE2 A;  2VQE C;  4JI7 C;  1XS3 A;  4DCV A;  2D27 A;  1NZB A;  4LF7 C;  4JI4 C;  1IBL C;  3C5E A;  1ULT A;  1PA4 A;  2UU9 C;  3C29 A;  3IEU A;  1USP B;  2QVY X;  1IBK C;  4RVO A;  2HJG A;  1BA3 A;  4L7I A;  4PUI A;  2VSQ A;  1KBU A;  2V6E A;  1AMU A;  1UKK A;  3AF6 A;  3J81 D;  4L4Q A;  1Z19 A;  2UXB C;  3FCE A;  4U5Y D;  4DWP A;  3ETC A;  4E10 A;  3RV2 A;  1GPM A;  4JI2 C;  4DV0 C;  1NYE A;  1MXB A;  3N2Q A;  4EAT A;  4WS9 A;  4NDN A;  2V7B A;  5K85 A;  1YJ7 A;  3A26 A;  5BR8 C;  2P2M A;  1MA7 A;  4E0G A;  2CU6 A;  4GKJ C;  4DG9 A;  4E0Y A;  2M5O A;  3NPD A;  1P7L A;  1IBM C;  1PG4 A;  3EER A;  4FUT A;  5H9U A;  4K0K C;  2M5H A;  3RG2 A;  2DHM A;  4X65 C;  4JM1 A;  4DV4 C;  2Z51 A;  2NCL A;  1QM4 A;  4LF4 C;  1P4E A;  4FTF A;  4I9G A;  3IPL A;  3TDE A;  3EQ6 A;  4E0Z A;  3I08 A;  4D4G A;  1OUQ A;  1XNR C;  2YWB A;  1I94 C;  1XNS A;  3NKH A;  2QVX X;  2D1S A;  5BUS A;  2OO4 A;  2PRO A;  3GR1 A;  4JI1 C;  4YHH C;  3R44 A;  1Q3V A;  4PHT A;  4DKS A;  4DCS A;  5KEI A;  3VNQ A;  4R0M A;  3IML A;  2P2J A;  4RMN A;  4BCA A;  4DV3 C;  1N34 C;  5IWA C;  2DPL A;  5A2Q D;  1F44 A;  4RLQ A;  2JNV A;  3L95 X;  2UUC C;  1XRA A;  2D28 C;  3MGV A;  3A9V A;  1XHJ A;  1QWI A;  3UEB A;  4TPS B;  4LFC C;  4NOZ A;  2WP0 C;  1M6X C;  1MKY A;  4DR1 C;  4JV5 C;  4ZJZ A;  4G37 A;  3A4I A;  1JOS A;  4RM2 A;  3IEV A;  1PVQ A;  1MD9 A;  2P02 A;  2KDN A;  4KTV A;  1KKG A;  4LF9 C;  2MMA B;  3E7X A;  4RLF A;  1Q3U A;  2KZ0 A;  5JRH A;  2DYJ A;  1XO0 A;  2AYA A;  1TH5 A;  1MXA A;  2D1R A;  4PRO C;  3GPC A;  5KYT A;  3LUS A;  4OX9 C;  1UWD A;  3VNS A;  5BSU A;  3TQI A;  4ZLP A;  2Y27 A;  2VZE A;  4DG8 A;  4DV5 C;  3UX3 A;  1PVR A;  4ISB A;  2YCB A;  4L2Z A;  4X64 C;  1N32 C;  3NI2 A;  4KHP C;  3DAY A;  1PVP A;  1MDF A;  4JI6 C;  4E0P A;  1ML8 A;  4DR3 C;  1ZB8 A;  3LAX A;  3T1H C;  5E7Q A;  5IFI A;  4MTN A;  1VLA A;  4B3R C;  3T79 A;  3TUF A;  5A19 A;  1HNZ C;  4DUY C;  3OTO C;  3NYQ A;  3UZ0 A;  1XRC A;  2E8E A;  2YX1 A;  4JI0 C;  2UXC C;  3N54 B;  5BSV A;  3LNV A;  4BBY A;  3VCF A;  1NY8 A;  5C6K A;  4JI8 C;  2ONF A;  4LF5 C;  4DV2 C;  3CJE A;  3G7S A;  5AE3 A;  2QL8 A;  1HNX C;  3KXW A;  2E8C A;  2PN2 A;  3A9U A;  3NYR A;  1DRG A;  1N33 C;  1M6X A;  2ASB A;  2EGT A;  2XR1 A;  1RG9 A;  4PZP A;  4PUH A;  4YY3 C;  1FJG C;  1O93 A;  1HNW C;  3AY0 A;  4CRX A;  5A1G A;  5CRX A;  4HPV A;  1LCI A;  2WD9 A;  3LNO A;  5LMU C;  3DLP X;  5CZV A;  4OYC A;  2HOI A;  4A8E A;  4E0J A;  4XX2 A;  3CQ1 A;  3L8C A;  4D57 A;  3CRX A;  2Y4N A;  4RM3 A;  4DR2 C;  2P2F A;  4R1L A;  2ZZM A;  1AE9 A;  4ACO A;  3ETO A;  1A0P A;  4RVN A;  3T1Y C;  4MH4 A;  3UXU A;  3O2E A;  4G1I A;  1ZB9 A;  1T5D X;  4JI5 C;  2P2B A;  4DR6 C;  3E7W A;  1MDB A;  4FUQ A; 
#chains in the Genus database with same CATH homology
 4A8E A;  1XNS A;  1M6X C;  3CRX A;  3NKH A;  1XO0 A;  1KBU A;  1DRG A;  1AIH A;  2A3V A;  5DOR A;  1M6X A;  1Q3V A;  1AE9 A;  3VCF A;  4DKS A;  1Z19 A;  1PVP A;  1NZB A;  5C6K A;  1P4E C;  1A0P A;  2CRX A;  1CRX A;  1Z1B A;  5DCF A;  1PVQ A;  1P4E A;  3UXU A;  1F44 A;  4CRX A;  2HOF A;  3C29 A;  5CRX A;  3MGV A;  2HOI A;  1P7D A;  1FLO A;  1OUQ A;  1MA7 A;  3C28 A;  1Q3U A;  1PVR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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