4F43A

Protelomerase tela mutant r255a complexed with caag hairpin dna
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
320
structure length
320
Chain Sequence
DYPKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRAPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSYMTYTLPEDRDNALARL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Linear Chromosome-generating System of Agrobacterium tumefaciens C58: PROTELOMERASE GENERATES AND PROTECTS HAIRPIN ENDS.
pubmed doi rcsb
molecule tags Recombination/dna
source organism Agrobacterium tumefaciens
molecule keywords Protelomerase
total genus 95
structure length 320
sequence length 320
ec nomenclature
pdb deposition date 2012-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16684 Telomere_res Telomere resolvase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.30 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A hpI Integrase; Chain A 4f43A02
4F43A 4E0ZA 4E0YA 4DWPA 2V6EA 4E0JA 4E0GA 4E0PA 4E10A 4F41A
chains in the Genus database with same CATH superfamily
3SQIA 4E0YA 1PVPA 1Q3VA 3C29A 5CRXA 1AE9A 4E0JA 3CRXA 3VCFA 4A8EA 4E0PA 5DORA 4ACOA 1Z1BA 3UXUA 1P4EC 5DCFA 4E0ZA 1M6XC 4CRXA 1MA7A 1FLOA 3MGVA 1XO0A 2HOFA 1A0PA 4F43A 1CRXA 1OUQA 1P7DA 1DRGA 3NKHA 1KBUA 2V6EA 1F44A 3C28A 1AIHA 4E10A 4F41A 1XNSA 2A3VA 3T79A 1Q3UA 1NZBA 4DKSA 4DWPA 1M6XA 2HOIA 1P4EA 1PVRA 1PVQA 4E0GA 1Z19A 5C6KA 2CRXA
chains in the Genus database with same CATH topology
4F43A 3T79A 3SQIA 4E0ZA 4E0YA 4DWPA 2V6EA 4E0JA 4E0GA 4E0PA 4ACOA 4E10A 4F41A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F43 A;  4E0Z A;  4E0Y A;  4DWP A;  2V6E A;  4E0J A;  4E0G A;  4E0P A;  4E10 A;  4F41 A; 
#chains in the Genus database with same CATH topology
 3SQI A;  4E0Y A;  1PVP A;  1Q3V A;  3C29 A;  5CRX A;  1AE9 A;  4E0J A;  3CRX A;  3VCF A;  4A8E A;  4E0P A;  5DOR A;  4ACO A;  1Z1B A;  3UXU A;  1P4E C;  5DCF A;  4E0Z A;  1M6X C;  4CRX A;  1MA7 A;  1FLO A;  3MGV A;  1XO0 A;  2HOF A;  1A0P A;  4F43 A;  1CRX A;  1OUQ A;  1P7D A;  1DRG A;  3NKH A;  1KBU A;  2V6E A;  1F44 A;  3C28 A;  1AIH A;  4E10 A;  4F41 A;  1XNS A;  2A3V A;  3T79 A;  1Q3U A;  1NZB A;  4DKS A;  4DWP A;  1M6X A;  2HOI A;  1P4E A;  1PVR A;  1PVQ A;  4E0G A;  1Z19 A;  5C6K A;  2CRX A; 
#chains in the Genus database with same CATH homology
 4F43 A;  3T79 A;  3SQI A;  4E0Z A;  4E0Y A;  4DWP A;  2V6E A;  4E0J A;  4E0G A;  4E0P A;  4ACO A;  4E10 A;  4F41 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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