4F43A

Protelomerase tela mutant r255a complexed with caag hairpin dna
Total Genus 95
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
95
sequence length
320
structure length
320
Chain Sequence
DYPKTGVATSIVEKIERAEFNTAGRKPTVLLRIADFIAAMNGMDAKQDMQALWDAEIAIMNGRAQTTIISYITKYRNAIREAFGDDHPMLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLIGMTGRAPYEVFTQAEFSPAPYGKGVSKWSILFNGQAKTKQGEGTKFGITYEIPVLTRSETVLAAYKRLRESGQGKLWHGMSIDDFSSETRLLLRDTVFNLFEDVWPKEELPKPYGLRHLYAEVAYHNFAPPHVTKNSYFAAILGHNNNDLETSLSYMTYTLPEDRDNALARL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Protelomerase
publication title Linear Chromosome-generating System of Agrobacterium tumefaciens C58: PROTELOMERASE GENERATES AND PROTECTS HAIRPIN ENDS.
pubmed doi rcsb
source organism Agrobacterium tumefaciens
molecule tags Recombination/dna
total genus 95
structure length 320
sequence length 320
ec nomenclature
pdb deposition date 2012-05-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16684 Telomere_res Telomere resolvase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.30 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A hpI Integrase; Chain A 4f43A02
4E10A 4E0PA 4F41A 4E0ZA 4DWPA 2V6EA 4E0YA 4F43A 4E0GA 4E0JA
chains in the Genus database with same CATH superfamily
3C29A 3VCFA 5CRXA 4E0PA 4ACOA 1KBUA 1CRXA 4DKSA 4E0ZA 1PVQA 4E0YA 3NKHA 3SQIA 1AIHA 4E0JA 1XNSA 1MA7A 1OUQA 1Q3UA 5DCFA 4E10A 1P4EA 1Z1BA 3CRXA 3C28A 1NZBA 4F41A 1P4EC 4DWPA 2V6EA 2HOFA 4F43A 1Z19A 1PVRA 2HOIA 4A8EA 1AE9A 1Q3VA 1M6XA 4CRXA 4E0GA 1M6XC 1PVPA 1DRGA 1F44A 2A3VA 3T79A 3UXUA 5C6KA 1P7DA 5DORA 2CRXA 1A0PA 1XO0A 3MGVA 1FLOA
chains in the Genus database with same CATH topology
4E10A 4E0PA 4ACOA 4F41A 4E0ZA 4DWPA 2V6EA 4E0YA 4F43A 4E0GA 3SQIA 4E0JA 3T79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4E10 A;  4E0P A;  4F41 A;  4E0Z A;  4DWP A;  2V6E A;  4E0Y A;  4F43 A;  4E0G A;  4E0J A; 
#chains in the Genus database with same CATH topology
 3C29 A;  3VCF A;  5CRX A;  4E0P A;  4ACO A;  1KBU A;  1CRX A;  4DKS A;  4E0Z A;  1PVQ A;  4E0Y A;  3NKH A;  3SQI A;  1AIH A;  4E0J A;  1XNS A;  1MA7 A;  1OUQ A;  1Q3U A;  5DCF A;  4E10 A;  1P4E A;  1Z1B A;  3CRX A;  3C28 A;  1NZB A;  4F41 A;  1P4E C;  4DWP A;  2V6E A;  2HOF A;  4F43 A;  1Z19 A;  1PVR A;  2HOI A;  4A8E A;  1AE9 A;  1Q3V A;  1M6X A;  4CRX A;  4E0G A;  1M6X C;  1PVP A;  1DRG A;  1F44 A;  2A3V A;  3T79 A;  3UXU A;  5C6K A;  1P7D A;  5DOR A;  2CRX A;  1A0P A;  1XO0 A;  3MGV A;  1FLO A; 
#chains in the Genus database with same CATH homology
 4E10 A;  4E0P A;  4ACO A;  4F41 A;  4E0Z A;  4DWP A;  2V6E A;  4E0Y A;  4F43 A;  4E0G A;  3SQI A;  4E0J A;  3T79 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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