1FLOA

Flp recombinase-holliday junction complex i
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
422
structure length
405
Chain Sequence
PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYSDITDIVSSLQLQFESKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping.
pubmed doi rcsb
molecule keywords SYMMETRIZED FRT DNA SITES
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
total genus 121
structure length 405
sequence length 422
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2000-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1floA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1floA01
1PVPA 3UXUA 1PVRA 1P4EC 2CRXA 1P7DA 2A3VA 3C29A 1MA7A 3MGVA 1M6XC 1A0PA 2HOIA 4A8EA 1PVQA 3NKHA 5C6KA 3C28A 1KBUA 1Z1BA 1F44A 3CRXA 1XNSA 1XO0A 1FLOA 3VCFA 1OUQA 1P4EA 4DKSA 5DCFA 1AE9A 1Z19A 1CRXA 1Q3VA 1NZBA 1M6XA 1AIHA 1Q3UA 1DRGA 4CRXA 2HOFA 5DORA 5CRXA
chains in the Genus database with same CATH superfamily
2UUCC 2D1SA 2YCBA 4XX2A 3A9UA 5CZVA 2YWCA 3MGVA 2OPLB 3T1YC 1N36C 4BC7A 1IBMC 2ZM6C 5A19A 2DYJA 2YX1A 1HNZC 3VNQA 4B3RC 1V26A 1XRCA 1XNSA 3L8CA 2E8EA 3VNRA 2QVYX 5DCFA 1N33C 2E5LC 2MCQA 1IB8A 2JMPA 4PUIA 2HOFA 1IBKC 4LF9C 4I9FA 4DCTA 4DG8A 4DV6C 3UX2A 4X65C 3DLPX 2BJOA 5BSUA 3A25A 5BSMA 2ZZNA 1F44A 3NYQA 3VNSA 1XMQC 3FCEA 1QWIA 1ZB9A 4BBYA 4E0PA 2QVZX 4D4GA 4X64C 4ZJZA 1PG3A 4F41A 3UOWA 1CRXA 1Q3VA 2YWBA 1USPA 3EQ6A 3CW8X 3A9VA 1I94C 4DR5C 1P4EC 4JV5C 5BURA 3R9XA 2EGTA 3IEVA 4TPSB 2DHMA 1XMOC 4D4IA 1GPMA 3OTOC 4JI1C 3NYRA 4HPVA 3JAMD 1DRGA 3T79A 4E0YA 4JI0C 2V7BA 3AF6A 4JI7C 2UXCC 5A1IA 4PROC 5AE2A 3GR0A 4DR2C 3E7WA 3GKUA 3J80D 3C28A 4E10A 1N34C 2P02A 5LMNC 4R1MA 4ISBA 1PA4A 4WS9A 1MKYA 3LNVA 1MXAA 4FUQA 3IMLA 2E7GA 1QM4A 3UZ0A 4MTNA 1PVPA 3CQ3A 4JI5C 5IT9D 3CJEA 1PVQA 1XRAA 1XRBA 2OBVA 1KBUA 2P2MA 3UX3A 1NY8A 2HHHC 5BR8C 4DV7C 1AMUA 1Q3UA 4CRXA 3GPCA 5AE3A 2P2BA 4GXRA 1V25A 3TQIA 1VEHA 4MH4A 1PU1A 2NCLA 1T5DX 4LFBC 4KTTA 2ONFA 4DCVA 3RV2A 4DV0C 2VQFC 1MXBA 1O9TA 4OYCA 4X66C 3VCFA 3IEUA 3DAYA 5E7QA 4PUHA 4DV2C 4KHPC 2MM9A 4NDNA 2E8FA 5BSWA 1NYEA 5KYTA 2A3VA 3CQ2A 1RG9A 1XNRC 4RLFA 2UUAC 5IWAC 4DV5C 4DUYC 4YHHC 5BSVA 1P4EA 1WH9A 2UUBC 1LQLA 1AE9A 1WCJA 1AIHA 2Y27A 2AYAA 1YJ7A 1HH2P 3KXWA 1MA7A 4A8EA 3L95X 4DR6C 3TR3A 1JOSA 2UXBC 1K0RA 3NPDA 2OPLA 4PZPA 1FLOA 1O92A 2KZFA 5ADZA 2VSQA 1NZBA 2M5HA 3I08A 5DV9A 1HR0C 2M5OA 3G7SA 1O93A 4DCSA 1MDFA 4RVNA 4KTVA 1XS3A 2PROA 3NKHA 4RLQA 5K8FA 5BSTA 4L2ZA 2VQEC 1Z1BA 3I07A 5GTDA 3TDEA 3SO4A 4DV1C 3AF5A 1UWDA 2JNVA 3N54B 1HNXC 4GS5A 3A26A 1XHJA 4ODJA 4ACOA 4LF4C 4E0GA 4JM1A 3DHVA 2ATWA 2PN2A 1M6XC 2HOIA 2E0GA 5FLXD 4FUTA 3IPLA 4R0MA 3E7XA 2Z51A 1IBLC 4EATA 3PESA 4OXIA 1N2FA 2HJGA 4L4QA 4DWPA 4E0ZA 3C5EA 4NOZA 1Z19A 5BUQA 3R9WA 2ASBA 4YY3C 2Y4OA 3LNOA 2CY1A 4LF7C 2ZZMA 5DORA 1EGAA 2XR1A 5CRXA 3UXUA 2CRXA 4PHTA 4R1LA 2P2JA 2UU9C 2P2QA 4DG9A 1L2FA 4DV3C 3GR1A 4B3MC 3B7WA 4L7IA 4DR3C 3CRXA 1USPB 5KYVA 3LGXA 4GKJC 4E0JA 1OUQA 1FJGC 4DKSA 3H2TA 1BA3A 3RG2A 4RM3A 2DPLA 3FCCA 3SQIA 2F4VC 4IR7A 2QW0X 2D27A 4BC9A 2KZ0A 4DV4C 3C29A 4JI2C 1N32C 1PG4A 3R44A 4LF8C 5T8SA 2VZEA 1MDBA 3ETOA 1MD9A 1V60A 2PT7G 5JRHA 4LE5A 4DUZC 3PBKA 3T1HC 1J5EC 3K6RA 4RMNA 4DR7C 1WF3A 4AQYC 1RY2A 2P2FA 3J81D 1HNWC 4JYAC 4G1IA 4DCUA 3AY0A 2MMAB 4K0KC 3EERA 3ETCA 1ZB8A 2D1RA 2QL8A 4U5YD 1O90A 2QVXX 4GKKC 4F43A 1A0PA 2V6EA 4JI6C 2D28C 3CQ1A 2CXCA 4I9GA 2WD9A 1LCIA 1ML8A 1P7LA 4G37A 3N2QA 3S82A 5BUSA 2KDNA 4JI4C 2D1TA 1M6XA 2Y4NA 4NXMC 3A4IA 2OO4A 4LF6C 4LFCC 4B3TC 4BCAA 4DR4C 4FTFA 1P7DA 1VLAA 1ULTA 1T5HX 3NI2A 2WP0C 1XNQC 4B3SC 5KEIA 4D57A 5A1GA 1TH5A 5C6KA 5LMUC 2CU6A 1MXCA 5CZXA 5BSRA 5IFIA 3TUFA 4RM2A 4GXQA 1KKGA 2D1QA 5AE1A 4JI3C 4IZ6A 4ZLPA 4DR1C 5A2QD 1PVRA 3UEBA 3LUSA 4BSZA 4LFAC 3LAXA 4LF5C 4WV3A 5LCIA 4D56A 4G36A 4RVOA 5H9UA 2UXDC 2BH1X 3PROC 4K0BA 3CW9A 1XO0A 2E8CA 5K85A 4X62C 4OX9C 4PUGA 1FUGA 2D7VA 4NXNC 3O2EA 2P20A 1UKKA 4JI8C 5T8TA
chains in the Genus database with same CATH topology
1PVPA 3UXUA 1PVRA 1P4EC 2CRXA 1P7DA 2A3VA 3C29A 1MA7A 3MGVA 1M6XC 1A0PA 2HOIA 4A8EA 1PVQA 3NKHA 5C6KA 3C28A 1KBUA 1Z1BA 1F44A 3CRXA 1XNSA 1XO0A 1FLOA 3VCFA 1OUQA 1P4EA 4DKSA 5DCFA 1AE9A 1Z19A 1CRXA 1Q3VA 1NZBA 1M6XA 1AIHA 1Q3UA 1DRGA 4CRXA 2HOFA 5DORA 5CRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PVP A;  3UXU A;  1PVR A;  1P4E C;  2CRX A;  1P7D A;  2A3V A;  3C29 A;  1MA7 A;  3MGV A;  1M6X C;  1A0P A;  2HOI A;  4A8E A;  1PVQ A;  3NKH A;  5C6K A;  3C28 A;  1KBU A;  1Z1B A;  1F44 A;  3CRX A;  1XNS A;  1XO0 A;  1FLO A;  3VCF A;  1OUQ A;  1P4E A;  4DKS A;  5DCF A;  1AE9 A;  1Z19 A;  1CRX A;  1Q3V A;  1NZB A;  1M6X A;  1AIH A;  1Q3U A;  1DRG A;  4CRX A;  2HOF A;  5DOR A;  5CRX A; 
#chains in the Genus database with same CATH topology
 2UUC C;  2D1S A;  2YCB A;  4XX2 A;  3A9U A;  5CZV A;  2YWC A;  3MGV A;  2OPL B;  3T1Y C;  1N36 C;  4BC7 A;  1IBM C;  2ZM6 C;  5A19 A;  2DYJ A;  2YX1 A;  1HNZ C;  3VNQ A;  4B3R C;  1V26 A;  1XRC A;  1XNS A;  3L8C A;  2E8E A;  3VNR A;  2QVY X;  5DCF A;  1N33 C;  2E5L C;  2MCQ A;  1IB8 A;  2JMP A;  4PUI A;  2HOF A;  1IBK C;  4LF9 C;  4I9F A;  4DCT A;  4DG8 A;  4DV6 C;  3UX2 A;  4X65 C;  3DLP X;  2BJO A;  5BSU A;  3A25 A;  5BSM A;  2ZZN A;  1F44 A;  3NYQ A;  3VNS A;  1XMQ C;  3FCE A;  1QWI A;  1ZB9 A;  4BBY A;  4E0P A;  2QVZ X;  4D4G A;  4X64 C;  4ZJZ A;  1PG3 A;  4F41 A;  3UOW A;  1CRX A;  1Q3V A;  2YWB A;  1USP A;  3EQ6 A;  3CW8 X;  3A9V A;  1I94 C;  4DR5 C;  1P4E C;  4JV5 C;  5BUR A;  3R9X A;  2EGT A;  3IEV A;  4TPS B;  2DHM A;  1XMO C;  4D4I A;  1GPM A;  3OTO C;  4JI1 C;  3NYR A;  4HPV A;  3JAM D;  1DRG A;  3T79 A;  4E0Y A;  4JI0 C;  2V7B A;  3AF6 A;  4JI7 C;  2UXC C;  5A1I A;  4PRO C;  5AE2 A;  3GR0 A;  4DR2 C;  3E7W A;  3GKU A;  3J80 D;  3C28 A;  4E10 A;  1N34 C;  2P02 A;  5LMN C;  4R1M A;  4ISB A;  1PA4 A;  4WS9 A;  1MKY A;  3LNV A;  1MXA A;  4FUQ A;  3IML A;  2E7G A;  1QM4 A;  3UZ0 A;  4MTN A;  1PVP A;  3CQ3 A;  4JI5 C;  5IT9 D;  3CJE A;  1PVQ A;  1XRA A;  1XRB A;  2OBV A;  1KBU A;  2P2M A;  3UX3 A;  1NY8 A;  2HHH C;  5BR8 C;  4DV7 C;  1AMU A;  1Q3U A;  4CRX A;  3GPC A;  5AE3 A;  2P2B A;  4GXR A;  1V25 A;  3TQI A;  1VEH A;  4MH4 A;  1PU1 A;  2NCL A;  1T5D X;  4LFB C;  4KTT A;  2ONF A;  4DCV A;  3RV2 A;  4DV0 C;  2VQF C;  1MXB A;  1O9T A;  4OYC A;  4X66 C;  3VCF A;  3IEU A;  3DAY A;  5E7Q A;  4PUH A;  4DV2 C;  4KHP C;  2MM9 A;  4NDN A;  2E8F A;  5BSW A;  1NYE A;  5KYT A;  2A3V A;  3CQ2 A;  1RG9 A;  1XNR C;  4RLF A;  2UUA C;  5IWA C;  4DV5 C;  4DUY C;  4YHH C;  5BSV A;  1P4E A;  1WH9 A;  2UUB C;  1LQL A;  1AE9 A;  1WCJ A;  1AIH A;  2Y27 A;  2AYA A;  1YJ7 A;  1HH2 P;  3KXW A;  1MA7 A;  4A8E A;  3L95 X;  4DR6 C;  3TR3 A;  1JOS A;  2UXB C;  1K0R A;  3NPD A;  2OPL A;  4PZP A;  1FLO A;  1O92 A;  2KZF A;  5ADZ A;  2VSQ A;  1NZB A;  2M5H A;  3I08 A;  5DV9 A;  1HR0 C;  2M5O A;  3G7S A;  1O93 A;  4DCS A;  1MDF A;  4RVN A;  4KTV A;  1XS3 A;  2PRO A;  3NKH A;  4RLQ A;  5K8F A;  5BST A;  4L2Z A;  2VQE C;  1Z1B A;  3I07 A;  5GTD A;  3TDE A;  3SO4 A;  4DV1 C;  3AF5 A;  1UWD A;  2JNV A;  3N54 B;  1HNX C;  4GS5 A;  3A26 A;  1XHJ A;  4ODJ A;  4ACO A;  4LF4 C;  4E0G A;  4JM1 A;  3DHV A;  2ATW A;  2PN2 A;  1M6X C;  2HOI A;  2E0G A;  5FLX D;  4FUT A;  3IPL A;  4R0M A;  3E7X A;  2Z51 A;  1IBL C;  4EAT A;  3PES A;  4OXI A;  1N2F A;  2HJG A;  4L4Q A;  4DWP A;  4E0Z A;  3C5E A;  4NOZ A;  1Z19 A;  5BUQ A;  3R9W A;  2ASB A;  4YY3 C;  2Y4O A;  3LNO A;  2CY1 A;  4LF7 C;  2ZZM A;  5DOR A;  1EGA A;  2XR1 A;  5CRX A;  3UXU A;  2CRX A;  4PHT A;  4R1L A;  2P2J A;  2UU9 C;  2P2Q A;  4DG9 A;  1L2F A;  4DV3 C;  3GR1 A;  4B3M C;  3B7W A;  4L7I A;  4DR3 C;  3CRX A;  1USP B;  5KYV A;  3LGX A;  4GKJ C;  4E0J A;  1OUQ A;  1FJG C;  4DKS A;  3H2T A;  1BA3 A;  3RG2 A;  4RM3 A;  2DPL A;  3FCC A;  3SQI A;  2F4V C;  4IR7 A;  2QW0 X;  2D27 A;  4BC9 A;  2KZ0 A;  4DV4 C;  3C29 A;  4JI2 C;  1N32 C;  1PG4 A;  3R44 A;  4LF8 C;  5T8S A;  2VZE A;  1MDB A;  3ETO A;  1MD9 A;  1V60 A;  2PT7 G;  5JRH A;  4LE5 A;  4DUZ C;  3PBK A;  3T1H C;  1J5E C;  3K6R A;  4RMN A;  4DR7 C;  1WF3 A;  4AQY C;  1RY2 A;  2P2F A;  3J81 D;  1HNW C;  4JYA C;  4G1I A;  4DCU A;  3AY0 A;  2MMA B;  4K0K C;  3EER A;  3ETC A;  1ZB8 A;  2D1R A;  2QL8 A;  4U5Y D;  1O90 A;  2QVX X;  4GKK C;  4F43 A;  1A0P A;  2V6E A;  4JI6 C;  2D28 C;  3CQ1 A;  2CXC A;  4I9G A;  2WD9 A;  1LCI A;  1ML8 A;  1P7L A;  4G37 A;  3N2Q A;  3S82 A;  5BUS A;  2KDN A;  4JI4 C;  2D1T A;  1M6X A;  2Y4N A;  4NXM C;  3A4I A;  2OO4 A;  4LF6 C;  4LFC C;  4B3T C;  4BCA A;  4DR4 C;  4FTF A;  1P7D A;  1VLA A;  1ULT A;  1T5H X;  3NI2 A;  2WP0 C;  1XNQ C;  4B3S C;  5KEI A;  4D57 A;  5A1G A;  1TH5 A;  5C6K A;  5LMU C;  2CU6 A;  1MXC A;  5CZX A;  5BSR A;  5IFI A;  3TUF A;  4RM2 A;  4GXQ A;  1KKG A;  2D1Q A;  5AE1 A;  4JI3 C;  4IZ6 A;  4ZLP A;  4DR1 C;  5A2Q D;  1PVR A;  3UEB A;  3LUS A;  4BSZ A;  4LFA C;  3LAX A;  4LF5 C;  4WV3 A;  5LCI A;  4D56 A;  4G36 A;  4RVO A;  5H9U A;  2UXD C;  2BH1 X;  3PRO C;  4K0B A;  3CW9 A;  1XO0 A;  2E8C A;  5K85 A;  4X62 C;  4OX9 C;  4PUG A;  1FUG A;  2D7V A;  4NXN C;  3O2E A;  2P20 A;  1UKK A;  4JI8 C;  5T8T A; 
#chains in the Genus database with same CATH homology
 1PVP A;  3UXU A;  1PVR A;  1P4E C;  2CRX A;  1P7D A;  2A3V A;  3C29 A;  1MA7 A;  3MGV A;  1M6X C;  1A0P A;  2HOI A;  4A8E A;  1PVQ A;  3NKH A;  5C6K A;  3C28 A;  1KBU A;  1Z1B A;  1F44 A;  3CRX A;  1XNS A;  1XO0 A;  1FLO A;  3VCF A;  1OUQ A;  1P4E A;  4DKS A;  5DCF A;  1AE9 A;  1Z19 A;  1CRX A;  1Q3V A;  1NZB A;  1M6X A;  1AIH A;  1Q3U A;  1DRG A;  4CRX A;  2HOF A;  5DOR A;  5CRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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