1FLOA

Flp recombinase-holliday junction complex i
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
422
structure length
405
Chain Sequence
PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYSDITDIVSSLQLQFESKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SYMMETRIZED FRT DNA SITES
publication title Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
total genus 121
structure length 405
sequence length 422
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2000-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1floA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1floA01
2HOIA 1M6XC 3VCFA 5DCFA 1AE9A 5DORA 1P4EA 1PVRA 1KBUA 1CRXA 1A0PA 3C29A 1F44A 1NZBA 1M6XA 1XNSA 1AIHA 4DKSA 2A3VA 1Q3UA 1P7DA 1Z19A 5C6KA 2HOFA 1PVPA 3CRXA 1Z1BA 1MA7A 1DRGA 3MGVA 1OUQA 4A8EA 1FLOA 1XO0A 3UXUA 4CRXA 1PVQA 2CRXA 1Q3VA 3NKHA 5CRXA 1P4EC 3C28A
chains in the Genus database with same CATH superfamily
2E8EA 3AF5A 2EGTA 4LFBC 3OTOC 3A9UA 4FUQA 4JI2C 3IEVA 3SQIA 2HOFA 5BSTA 4PROC 4FUTA 2CRXA 4DV1C 4ISBA 3TQIA 4KTVA 5DCFA 2YWCA 4NOZA 1HNZC 5A1IA 3ETCA 4BC7A 2Y4OA 4DR5C 1XRAA 1HH2P 4B3TC 5AE1A 3GPCA 3L8CA 2OBVA 5BUSA 4K0KC 1V26A 2P2JA 2DHMA 1XMOC 4D56A 4EATA 2V6EA 5CRXA 2MM9A 4GXRA 1UWDA 5ADZA 2JMPA 5DV9A 2ZZNA 4JI4C 4B3MC 4L2ZA 4LFCC 3C5EA 3IPLA 1AMUA 3EQ6A 4RLFA 4X64C 1MD9A 2QL8A 3ETOA 4ZJZA 4R1LA 2E8CA 4LF5C 2XR1A 2VSQA 1UKKA 4DR7C 2M5HA 1USPA 1MA7A 1XRBA 1LCIA 4NXMC 4I9FA 4R1MA 1PVQA 4PUGA 1N36C 1O92A 4ODJA 2VQFC 2V7BA 1M6XC 3CJEA 5IWAC 1CRXA 4LFAC 3B7WA 3VNQA 3E7XA 4D57A 2KZ0A 3UOWA 4D4GA 5BSRA 1P7DA 5H9UA 2BH1X 2YX1A 4OXIA 4DV2C 2OPLA 2ASBA 3R44A 3A4IA 1XHJA 4KTTA 2UXBC 3NI2A 4DR4C 1PU1A 4LF7C 4OX9C 4X62C 5LMUC 5JRHA 2UU9C 2QVZX 4WV3A 4PUIA 1O9TA 2YCBA 3A26A 2P2MA 4E0ZA 2UUBC 2D1SA 2DYJA 4E10A 1MKYA 1MDBA 4PHTA 4R0MA 4CRXA 1N33C 1FJGC 1ZB8A 3TR3A 4OYCA 3UEBA 3LUSA 1HNXC 4IZ6A 4BSZA 4IR7A 1AE9A 3NPDA 4JI5C 4ZLPA 2ONFA 4JV5C 1TH5A 4LE5A 3TUFA 3NYRA 2UUCC 1XNRC 4DCTA 3AY0A 1HR0C 4MTNA 3N2QA 2CXCA 5IFIA 3T1HC 4RM3A 2P20A 3A9VA 4X65C 4F43A 3C28A 4U5YD 2P2FA 3PROC 1QM4A 4X66C 1J5EC 1WH9A 3VNRA 4RLQA 4PUHA 1MXCA 1M6XA 1XS3A 4G37A 3UX3A 3EERA 3RV2A 3R9XA 1IBLC 1V25A 4BC9A 4B3RC 3GKUA 3N54B 4JI6C 1XO0A 2VQEC 1Q3VA 5KYTA 3NKHA 2D28C 3LNOA 4NDNA 4GXQA 3I07A 2P2BA 3IMLA 1FUGA 4GS5A 5KYVA 5E7QA 1A0PA 4RM2A 4JI8C 5T8TA 1AIHA 4MH4A 4RMNA 4E0PA 5C6KA 1IBKC 2E7GA 3CW8X 3G7SA 3LGXA 3TDEA 5AE3A 1VLAA 4GKJC 1NYEA 3UXUA 1PG3A 4DCUA 5AE2A 3KXWA 4TPSB 3GR0A 2KDNA 3UX2A 3DLPX 1ZB9A 2CU6A 4E0GA 4DV4C 4B3SC 4BCAA 5IT9D 2ZM6C 4E0YA 4L4QA 1N34C 2D1TA 2UUAC 1NZBA 2ATWA 3DAYA 4AQYC 3DHVA 2E8FA 5K8FA 2M5OA 1MXBA 1WCJA 2DPLA 1PG4A 1K0RA 3H2TA 3CW9A 1NY8A 1V60A 4JI7C 4DG8A 4LF8C 2NCLA 5A19A 4GKKC 1BA3A 3UZ0A 1F44A 2QVXX 3CQ1A 3I08A 2A3VA 1N2FA 4BBYA 4G36A 1PVPA 4K0BA 1Z1BA 2MCQA 5BURA 3MGVA 1I94C 4E0JA 4RVOA 1XRCA 3S82A 1PA4A 2AYAA 3VCFA 3FCCA 4YHHC 4KHPC 4DCVA 3CQ3A 4DG9A 5BSWA 4LF4C 3T79A 2KZFA 4HPVA 1WF3A 3J81D 3J80D 4DUZC 4LF9C 2VZEA 2D27A 2Y27A 2WP0C 1FLOA 4F41A 4JI3C 3FCEA 2MMAB 4RVNA 4DR3C 1EGAA 4D4IA 1N32C 3JAMD 2QVYX 4FTFA 2WD9A 3E7WA 3T1YC 2D1RA 4JM1A 4WS9A 1XNQC 1GPMA 4DKSA 4DWPA 3L95X 1Z19A 1P7LA 1DRGA 1OUQA 4DV0C 4DV5C 4DV6C 4LF6C 1LQLA 3GR1A 3CQ2A 1ML8A 2PN2A 3A25A 5A1GA 5FLXD 2QW0X 3LAXA 1VEHA 4XX2A 5A2QD 1P4EA 1PVRA 1RY2A 5BR8C 3C29A 2E0GA 1RG9A 5BSVA 2ZZMA 1T5HX 2D7VA 3CRXA 4JI1C 5BSUA 4A8EA 4PZPA 2HHHC 3K6RA 2E5LC 4ACOA 1IB8A 1JOSA 3VNSA 1KBUA 5CZVA 4DR1C 3LNVA 4JYAC 2UXCC 1Q3UA 5BSMA 5K85A 4DUYC 5T8SA 2Y4NA 3SO4A 3PESA 1HNWC 4G1IA 1MXAA 1P4EC 4DV3C 5BUQA 1O90A 2HOIA 4DV7C 4DCSA 1USPB 4NXNC 3O2EA 3RG2A 3NYQA 1KKGA 2P2QA 5KEIA 2F4VC 1XMQC 1ULTA 2UXDC 2PROA 2Z51A 2D1QA 4L7IA 2CY1A 2JNVA 1YJ7A 2YWBA 4I9GA 1IBMC 5GTDA 4DR2C 3IEUA 2PT7G 4YY3C 2HJGA 5DORA 2P02A 1L2FA 4DR6C 1XNSA 2OPLB 1T5DX 2BJOA 5LMNC 1MDFA 1QWIA 2OO4A 4JI0C 5CZXA 3R9WA 1O93A 3PBKA 5LCIA 3AF6A
chains in the Genus database with same CATH topology
2HOIA 1M6XC 3VCFA 5DCFA 1AE9A 5DORA 1P4EA 1PVRA 1KBUA 1CRXA 1A0PA 3C29A 1F44A 1NZBA 1M6XA 1XNSA 1AIHA 4DKSA 2A3VA 1Q3UA 1P7DA 1Z19A 5C6KA 2HOFA 1PVPA 3CRXA 1Z1BA 1MA7A 1DRGA 3MGVA 1OUQA 4A8EA 1FLOA 1XO0A 3UXUA 4CRXA 1PVQA 2CRXA 1Q3VA 3NKHA 5CRXA 1P4EC 3C28A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HOI A;  1M6X C;  3VCF A;  5DCF A;  1AE9 A;  5DOR A;  1P4E A;  1PVR A;  1KBU A;  1CRX A;  1A0P A;  3C29 A;  1F44 A;  1NZB A;  1M6X A;  1XNS A;  1AIH A;  4DKS A;  2A3V A;  1Q3U A;  1P7D A;  1Z19 A;  5C6K A;  2HOF A;  1PVP A;  3CRX A;  1Z1B A;  1MA7 A;  1DRG A;  3MGV A;  1OUQ A;  4A8E A;  1FLO A;  1XO0 A;  3UXU A;  4CRX A;  1PVQ A;  2CRX A;  1Q3V A;  3NKH A;  5CRX A;  1P4E C;  3C28 A; 
#chains in the Genus database with same CATH topology
 2E8E A;  3AF5 A;  2EGT A;  4LFB C;  3OTO C;  3A9U A;  4FUQ A;  4JI2 C;  3IEV A;  3SQI A;  2HOF A;  5BST A;  4PRO C;  4FUT A;  2CRX A;  4DV1 C;  4ISB A;  3TQI A;  4KTV A;  5DCF A;  2YWC A;  4NOZ A;  1HNZ C;  5A1I A;  3ETC A;  4BC7 A;  2Y4O A;  4DR5 C;  1XRA A;  1HH2 P;  4B3T C;  5AE1 A;  3GPC A;  3L8C A;  2OBV A;  5BUS A;  4K0K C;  1V26 A;  2P2J A;  2DHM A;  1XMO C;  4D56 A;  4EAT A;  2V6E A;  5CRX A;  2MM9 A;  4GXR A;  1UWD A;  5ADZ A;  2JMP A;  5DV9 A;  2ZZN A;  4JI4 C;  4B3M C;  4L2Z A;  4LFC C;  3C5E A;  3IPL A;  1AMU A;  3EQ6 A;  4RLF A;  4X64 C;  1MD9 A;  2QL8 A;  3ETO A;  4ZJZ A;  4R1L A;  2E8C A;  4LF5 C;  2XR1 A;  2VSQ A;  1UKK A;  4DR7 C;  2M5H A;  1USP A;  1MA7 A;  1XRB A;  1LCI A;  4NXM C;  4I9F A;  4R1M A;  1PVQ A;  4PUG A;  1N36 C;  1O92 A;  4ODJ A;  2VQF C;  2V7B A;  1M6X C;  3CJE A;  5IWA C;  1CRX A;  4LFA C;  3B7W A;  3VNQ A;  3E7X A;  4D57 A;  2KZ0 A;  3UOW A;  4D4G A;  5BSR A;  1P7D A;  5H9U A;  2BH1 X;  2YX1 A;  4OXI A;  4DV2 C;  2OPL A;  2ASB A;  3R44 A;  3A4I A;  1XHJ A;  4KTT A;  2UXB C;  3NI2 A;  4DR4 C;  1PU1 A;  4LF7 C;  4OX9 C;  4X62 C;  5LMU C;  5JRH A;  2UU9 C;  2QVZ X;  4WV3 A;  4PUI A;  1O9T A;  2YCB A;  3A26 A;  2P2M A;  4E0Z A;  2UUB C;  2D1S A;  2DYJ A;  4E10 A;  1MKY A;  1MDB A;  4PHT A;  4R0M A;  4CRX A;  1N33 C;  1FJG C;  1ZB8 A;  3TR3 A;  4OYC A;  3UEB A;  3LUS A;  1HNX C;  4IZ6 A;  4BSZ A;  4IR7 A;  1AE9 A;  3NPD A;  4JI5 C;  4ZLP A;  2ONF A;  4JV5 C;  1TH5 A;  4LE5 A;  3TUF A;  3NYR A;  2UUC C;  1XNR C;  4DCT A;  3AY0 A;  1HR0 C;  4MTN A;  3N2Q A;  2CXC A;  5IFI A;  3T1H C;  4RM3 A;  2P20 A;  3A9V A;  4X65 C;  4F43 A;  3C28 A;  4U5Y D;  2P2F A;  3PRO C;  1QM4 A;  4X66 C;  1J5E C;  1WH9 A;  3VNR A;  4RLQ A;  4PUH A;  1MXC A;  1M6X A;  1XS3 A;  4G37 A;  3UX3 A;  3EER A;  3RV2 A;  3R9X A;  1IBL C;  1V25 A;  4BC9 A;  4B3R C;  3GKU A;  3N54 B;  4JI6 C;  1XO0 A;  2VQE C;  1Q3V A;  5KYT A;  3NKH A;  2D28 C;  3LNO A;  4NDN A;  4GXQ A;  3I07 A;  2P2B A;  3IML A;  1FUG A;  4GS5 A;  5KYV A;  5E7Q A;  1A0P A;  4RM2 A;  4JI8 C;  5T8T A;  1AIH A;  4MH4 A;  4RMN A;  4E0P A;  5C6K A;  1IBK C;  2E7G A;  3CW8 X;  3G7S A;  3LGX A;  3TDE A;  5AE3 A;  1VLA A;  4GKJ C;  1NYE A;  3UXU A;  1PG3 A;  4DCU A;  5AE2 A;  3KXW A;  4TPS B;  3GR0 A;  2KDN A;  3UX2 A;  3DLP X;  1ZB9 A;  2CU6 A;  4E0G A;  4DV4 C;  4B3S C;  4BCA A;  5IT9 D;  2ZM6 C;  4E0Y A;  4L4Q A;  1N34 C;  2D1T A;  2UUA C;  1NZB A;  2ATW A;  3DAY A;  4AQY C;  3DHV A;  2E8F A;  5K8F A;  2M5O A;  1MXB A;  1WCJ A;  2DPL A;  1PG4 A;  1K0R A;  3H2T A;  3CW9 A;  1NY8 A;  1V60 A;  4JI7 C;  4DG8 A;  4LF8 C;  2NCL A;  5A19 A;  4GKK C;  1BA3 A;  3UZ0 A;  1F44 A;  2QVX X;  3CQ1 A;  3I08 A;  2A3V A;  1N2F A;  4BBY A;  4G36 A;  1PVP A;  4K0B A;  1Z1B A;  2MCQ A;  5BUR A;  3MGV A;  1I94 C;  4E0J A;  4RVO A;  1XRC A;  3S82 A;  1PA4 A;  2AYA A;  3VCF A;  3FCC A;  4YHH C;  4KHP C;  4DCV A;  3CQ3 A;  4DG9 A;  5BSW A;  4LF4 C;  3T79 A;  2KZF A;  4HPV A;  1WF3 A;  3J81 D;  3J80 D;  4DUZ C;  4LF9 C;  2VZE A;  2D27 A;  2Y27 A;  2WP0 C;  1FLO A;  4F41 A;  4JI3 C;  3FCE A;  2MMA B;  4RVN A;  4DR3 C;  1EGA A;  4D4I A;  1N32 C;  3JAM D;  2QVY X;  4FTF A;  2WD9 A;  3E7W A;  3T1Y C;  2D1R A;  4JM1 A;  4WS9 A;  1XNQ C;  1GPM A;  4DKS A;  4DWP A;  3L95 X;  1Z19 A;  1P7L A;  1DRG A;  1OUQ A;  4DV0 C;  4DV5 C;  4DV6 C;  4LF6 C;  1LQL A;  3GR1 A;  3CQ2 A;  1ML8 A;  2PN2 A;  3A25 A;  5A1G A;  5FLX D;  2QW0 X;  3LAX A;  1VEH A;  4XX2 A;  5A2Q D;  1P4E A;  1PVR A;  1RY2 A;  5BR8 C;  3C29 A;  2E0G A;  1RG9 A;  5BSV A;  2ZZM A;  1T5H X;  2D7V A;  3CRX A;  4JI1 C;  5BSU A;  4A8E A;  4PZP A;  2HHH C;  3K6R A;  2E5L C;  4ACO A;  1IB8 A;  1JOS A;  3VNS A;  1KBU A;  5CZV A;  4DR1 C;  3LNV A;  4JYA C;  2UXC C;  1Q3U A;  5BSM A;  5K85 A;  4DUY C;  5T8S A;  2Y4N A;  3SO4 A;  3PES A;  1HNW C;  4G1I A;  1MXA A;  1P4E C;  4DV3 C;  5BUQ A;  1O90 A;  2HOI A;  4DV7 C;  4DCS A;  1USP B;  4NXN C;  3O2E A;  3RG2 A;  3NYQ A;  1KKG A;  2P2Q A;  5KEI A;  2F4V C;  1XMQ C;  1ULT A;  2UXD C;  2PRO A;  2Z51 A;  2D1Q A;  4L7I A;  2CY1 A;  2JNV A;  1YJ7 A;  2YWB A;  4I9G A;  1IBM C;  5GTD A;  4DR2 C;  3IEU A;  2PT7 G;  4YY3 C;  2HJG A;  5DOR A;  2P02 A;  1L2F A;  4DR6 C;  1XNS A;  2OPL B;  1T5D X;  2BJO A;  5LMN C;  1MDF A;  1QWI A;  2OO4 A;  4JI0 C;  5CZX A;  3R9W A;  1O93 A;  3PBK A;  5LCI A;  3AF6 A; 
#chains in the Genus database with same CATH homology
 2HOI A;  1M6X C;  3VCF A;  5DCF A;  1AE9 A;  5DOR A;  1P4E A;  1PVR A;  1KBU A;  1CRX A;  1A0P A;  3C29 A;  1F44 A;  1NZB A;  1M6X A;  1XNS A;  1AIH A;  4DKS A;  2A3V A;  1Q3U A;  1P7D A;  1Z19 A;  5C6K A;  2HOF A;  1PVP A;  3CRX A;  1Z1B A;  1MA7 A;  1DRG A;  3MGV A;  1OUQ A;  4A8E A;  1FLO A;  1XO0 A;  3UXU A;  4CRX A;  1PVQ A;  2CRX A;  1Q3V A;  3NKH A;  5CRX A;  1P4E C;  3C28 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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