1FLOA

Flp recombinase-holliday junction complex i
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
422
structure length
405
Chain Sequence
PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYSDITDIVSSLQLQFESKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords SYMMETRIZED FRT DNA SITES
publication title Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
total genus 121
structure length 405
sequence length 422
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2000-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1floA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1floA01
5DCFA 2CRXA 1KBUA 3NKHA 1PVQA 1F44A 5DORA 1NZBA 2A3VA 1MA7A 5C6KA 1M6XA 2HOFA 1P4EC 1Z1BA 1OUQA 1DRGA 1CRXA 1XO0A 1Q3VA 1AE9A 5CRXA 3MGVA 3C28A 1PVPA 4A8EA 4DKSA 2HOIA 1XNSA 1M6XC 3VCFA 4CRXA 3CRXA 1A0PA 1PVRA 3C29A 1FLOA 1AIHA 3UXUA 1P4EA 1Z19A 1P7DA 1Q3UA
chains in the Genus database with same CATH superfamily
3E7WA 3A25A 3LUSA 3NKHA 3GR0A 2QVZX 3RG2A 2JNVA 4L4QA 4ISBA 4DV5C 4JM1A 5CZVA 1Z1BA 1DRGA 2HHHC 4LE5A 3E7XA 5CRXA 3B7WA 1PVPA 4KTTA 4B3SC 2YX1A 3L95X 4DCUA 2DPLA 3NI2A 3CRXA 4LF5C 4JI0C 1IBMC 2BH1X 1WF3A 3IPLA 4DWPA 3T1HC 2M5HA 4R0MA 4D56A 3TDEA 3VNSA 4FTFA 2D1RA 4JI6C 1NYEA 2Z51A 5A2QD 2Y4NA 3NYRA 1XNSA 5BSVA 1A0PA 3SO4A 1K0RA 4YY3C 1XRAA 3CW8X 1I94C 4RM2A 3LGXA 4GS5A 2Y27A 4E0JA 2UXDC 5KEIA 2ZM6C 2ZZNA 3TUFA 3GR1A 3RV2A 5DV9A 2PN2A 1HR0C 2UUAC 1HNWC 4DR5C 3L8CA 2E0GA 3VCFA 4PHTA 4JI2C 3R9WA 2P2BA 4D4GA 4PUIA 3CW9A 1MXCA 2D1SA 5A19A 1VLAA 3O2EA 5AE2A 3J81D 4DV7C 3ETCA 4TPSB 4DCSA 1PVQA 3TR3A 3PROC 3R44A 4HPVA 3C5EA 1TH5A 3CQ3A 2UUBC 1XHJA 2P2MA 2P2JA 3A9UA 3A9VA 5BSWA 5LMNC 4DV4C 4BC7A 2WP0C 4DG9A 2MCQA 3I08A 2P02A 3LNOA 1N32C 3UZ0A 4FUTA 1XRBA 1ML8A 4R1LA 5DORA 1V25A 1MKYA 5BSRA 2F4VC 1M6XA 4DV6C 4NDNA 1CRXA 4GXRA 4D57A 1UWDA 4YHHC 4LF9C 1MDBA 4MH4A 4ZJZA 3IEVA 3EQ6A 3DHVA 1JOSA 2ASBA 3FCCA 4E0PA 4NXNC 3UX3A 2AYAA 2E8FA 4DR6C 1XO0A 2E8CA 4ACOA 3LAXA 1ZB9A 3CQ2A 4LFBC 3A26A 1P7LA 2OPLA 1IBLC 4RMNA 3PBKA 4LF8C 3NPDA 2DYJA 2OO4A 1P7DA 1FUGA 4DUYC 5DCFA 3IEUA 1KBUA 4LF6C 4X65C 3T1YC 4ODJA 2V7BA 4JV5C 5GTDA 4F43A 4AQYC 2YWCA 4X62C 2DHMA 3AF6A 4PROC 2ATWA 3TQIA 1FLOA 3UOWA 2QW0X 4JYAC 5A1IA 2Y4OA 3H2TA 4L2ZA 4OX9C 3VNQA 3OTOC 4OYCA 1O93A 2UXBC 2V6EA 3LNVA 5BSMA 1WCJA 1Q3VA 1UKKA 2MM9A 4IZ6A 2ONFA 4BBYA 4D4IA 4R1MA 4RLFA 4LFCC 3R9XA 4WS9A 4RM3A 3C29A 3GKUA 4F41A 1EGAA 5AE3A 2XR1A 1P4EA 1Q3UA 2CRXA 4GXQA 1IBKC 1PU1A 3PESA 2P20A 4DV0C 1L2FA 2HOFA 1OUQA 2KDNA 5KYVA 1V60A 1XS3A 5CZXA 3UEBA 3FCEA 4LF4C 4DR1C 2UU9C 4G36A 1J5EC 2D27A 4PUHA 4DR4C 3UXUA 3GPCA 4DR3C 4B3TC 1USPB 2CY1A 3N2QA 1ZB8A 4OXIA 1PA4A 2VZEA 2E5LC 3N54B 4E0ZA 4G1IA 4EATA 2QVYX 3IMLA 4BCAA 5LMUC 1N2FA 5K8FA 1MXBA 2VQFC 2KZFA 1LCIA 1PVRA 2UUCC 4JI7C 4K0KC 5IT9D 5BURA 1KKGA 4IR7A 5BUSA 4JI3C 2OPLB 2EGTA 4U5YD 2QVXX 3EERA 2E8EA 1VEHA 1MD9A 5IFIA 2P2QA 2OBVA 1ULTA 4DUZC 4RLQA 3MGVA 2D28C 2D1QA 1QWIA 4X66C 2HOIA 5BUQA 3AF5A 1V26A 2BJOA 1T5DX 2M5OA 5K85A 4BSZA 4LF7C 1PG4A 4PUGA 1N36C 2UXCC 2A3VA 5C6KA 4BC9A 5KYTA 5H9UA 1IB8A 3C28A 2KZ0A 5BR8C 1MDFA 1M6XC 5ADZA 3AY0A 2CU6A 3JAMD 1XMQC 2VSQA 2WD9A 4JI4C 5E7QA 2JMPA 5BSTA 2CXCA 1O9TA 5FLXD 1AMUA 4E0GA 3I07A 2YWBA 4DV3C 1MA7A 1RY2A 1HNXC 2VQEC 3DAYA 4I9FA 4DG8A 4NOZA 4GKJC 4CRXA 4NXMC 4JI5C 1XNRC 1QM4A 2P2FA 4DR2C 3UX2A 1MXAA 1XMOC 2ZZMA 2NCLA 4MTNA 1HH2P 4E10A 1F44A 1T5HX 3K6RA 4B3RC 3CQ1A 5T8TA 3DLPX 2HJGA 4DV1C 3CJEA 4RVOA 4KTVA 4A8EA 3J80D 3SQIA 2PT7G 2D7VA 2QL8A 1LQLA 2D1TA 5JRHA 4WV3A 4B3MC 4X64C 4DR7C 1Z19A 1RG9A 1FJGC 2MMAB 5IWAC 5AE1A 4DCTA 1BA3A 2E7GA 1O92A 1XNQC 3ETOA 1HNZC 2YCBA 3A4IA 4JI1C 4JI8C 2PROA 1NY8A 1WH9A 4FUQA 4GKKC 4RVNA 4LFAC 1YJ7A 1AIHA 1PG3A 1O90A 5LCIA 1N33C 3G7SA 4KHPC 5A1GA 4I9GA 4E0YA 5BSUA 1NZBA 4K0BA 1P4EC 4XX2A 3VNRA 4PZPA 1AE9A 4G37A 1GPMA 4ZLPA 4L7IA 4DKSA 3KXWA 1USPA 1N34C 3NYQA 4DV2C 1XRCA 3S82A 4DCVA 5T8SA 3T79A
chains in the Genus database with same CATH topology
5DCFA 2CRXA 1KBUA 3NKHA 1PVQA 1F44A 5DORA 1NZBA 2A3VA 1MA7A 5C6KA 1M6XA 2HOFA 1P4EC 1Z1BA 1OUQA 1DRGA 1CRXA 1XO0A 1Q3VA 1AE9A 5CRXA 3MGVA 3C28A 1PVPA 4A8EA 4DKSA 2HOIA 1XNSA 1M6XC 3VCFA 4CRXA 3CRXA 1A0PA 1PVRA 3C29A 1FLOA 1AIHA 3UXUA 1P4EA 1Z19A 1P7DA 1Q3UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DCF A;  2CRX A;  1KBU A;  3NKH A;  1PVQ A;  1F44 A;  5DOR A;  1NZB A;  2A3V A;  1MA7 A;  5C6K A;  1M6X A;  2HOF A;  1P4E C;  1Z1B A;  1OUQ A;  1DRG A;  1CRX A;  1XO0 A;  1Q3V A;  1AE9 A;  5CRX A;  3MGV A;  3C28 A;  1PVP A;  4A8E A;  4DKS A;  2HOI A;  1XNS A;  1M6X C;  3VCF A;  4CRX A;  3CRX A;  1A0P A;  1PVR A;  3C29 A;  1FLO A;  1AIH A;  3UXU A;  1P4E A;  1Z19 A;  1P7D A;  1Q3U A; 
#chains in the Genus database with same CATH topology
 3E7W A;  3A25 A;  3LUS A;  3NKH A;  3GR0 A;  2QVZ X;  3RG2 A;  2JNV A;  4L4Q A;  4ISB A;  4DV5 C;  4JM1 A;  5CZV A;  1Z1B A;  1DRG A;  2HHH C;  4LE5 A;  3E7X A;  5CRX A;  3B7W A;  1PVP A;  4KTT A;  4B3S C;  2YX1 A;  3L95 X;  4DCU A;  2DPL A;  3NI2 A;  3CRX A;  4LF5 C;  4JI0 C;  1IBM C;  2BH1 X;  1WF3 A;  3IPL A;  4DWP A;  3T1H C;  2M5H A;  4R0M A;  4D56 A;  3TDE A;  3VNS A;  4FTF A;  2D1R A;  4JI6 C;  1NYE A;  2Z51 A;  5A2Q D;  2Y4N A;  3NYR A;  1XNS A;  5BSV A;  1A0P A;  3SO4 A;  1K0R A;  4YY3 C;  1XRA A;  3CW8 X;  1I94 C;  4RM2 A;  3LGX A;  4GS5 A;  2Y27 A;  4E0J A;  2UXD C;  5KEI A;  2ZM6 C;  2ZZN A;  3TUF A;  3GR1 A;  3RV2 A;  5DV9 A;  2PN2 A;  1HR0 C;  2UUA C;  1HNW C;  4DR5 C;  3L8C A;  2E0G A;  3VCF A;  4PHT A;  4JI2 C;  3R9W A;  2P2B A;  4D4G A;  4PUI A;  3CW9 A;  1MXC A;  2D1S A;  5A19 A;  1VLA A;  3O2E A;  5AE2 A;  3J81 D;  4DV7 C;  3ETC A;  4TPS B;  4DCS A;  1PVQ A;  3TR3 A;  3PRO C;  3R44 A;  4HPV A;  3C5E A;  1TH5 A;  3CQ3 A;  2UUB C;  1XHJ A;  2P2M A;  2P2J A;  3A9U A;  3A9V A;  5BSW A;  5LMN C;  4DV4 C;  4BC7 A;  2WP0 C;  4DG9 A;  2MCQ A;  3I08 A;  2P02 A;  3LNO A;  1N32 C;  3UZ0 A;  4FUT A;  1XRB A;  1ML8 A;  4R1L A;  5DOR A;  1V25 A;  1MKY A;  5BSR A;  2F4V C;  1M6X A;  4DV6 C;  4NDN A;  1CRX A;  4GXR A;  4D57 A;  1UWD A;  4YHH C;  4LF9 C;  1MDB A;  4MH4 A;  4ZJZ A;  3IEV A;  3EQ6 A;  3DHV A;  1JOS A;  2ASB A;  3FCC A;  4E0P A;  4NXN C;  3UX3 A;  2AYA A;  2E8F A;  4DR6 C;  1XO0 A;  2E8C A;  4ACO A;  3LAX A;  1ZB9 A;  3CQ2 A;  4LFB C;  3A26 A;  1P7L A;  2OPL A;  1IBL C;  4RMN A;  3PBK A;  4LF8 C;  3NPD A;  2DYJ A;  2OO4 A;  1P7D A;  1FUG A;  4DUY C;  5DCF A;  3IEU A;  1KBU A;  4LF6 C;  4X65 C;  3T1Y C;  4ODJ A;  2V7B A;  4JV5 C;  5GTD A;  4F43 A;  4AQY C;  2YWC A;  4X62 C;  2DHM A;  3AF6 A;  4PRO C;  2ATW A;  3TQI A;  1FLO A;  3UOW A;  2QW0 X;  4JYA C;  5A1I A;  2Y4O A;  3H2T A;  4L2Z A;  4OX9 C;  3VNQ A;  3OTO C;  4OYC A;  1O93 A;  2UXB C;  2V6E A;  3LNV A;  5BSM A;  1WCJ A;  1Q3V A;  1UKK A;  2MM9 A;  4IZ6 A;  2ONF A;  4BBY A;  4D4I A;  4R1M A;  4RLF A;  4LFC C;  3R9X A;  4WS9 A;  4RM3 A;  3C29 A;  3GKU A;  4F41 A;  1EGA A;  5AE3 A;  2XR1 A;  1P4E A;  1Q3U A;  2CRX A;  4GXQ A;  1IBK C;  1PU1 A;  3PES A;  2P20 A;  4DV0 C;  1L2F A;  2HOF A;  1OUQ A;  2KDN A;  5KYV A;  1V60 A;  1XS3 A;  5CZX A;  3UEB A;  3FCE A;  4LF4 C;  4DR1 C;  2UU9 C;  4G36 A;  1J5E C;  2D27 A;  4PUH A;  4DR4 C;  3UXU A;  3GPC A;  4DR3 C;  4B3T C;  1USP B;  2CY1 A;  3N2Q A;  1ZB8 A;  4OXI A;  1PA4 A;  2VZE A;  2E5L C;  3N54 B;  4E0Z A;  4G1I A;  4EAT A;  2QVY X;  3IML A;  4BCA A;  5LMU C;  1N2F A;  5K8F A;  1MXB A;  2VQF C;  2KZF A;  1LCI A;  1PVR A;  2UUC C;  4JI7 C;  4K0K C;  5IT9 D;  5BUR A;  1KKG A;  4IR7 A;  5BUS A;  4JI3 C;  2OPL B;  2EGT A;  4U5Y D;  2QVX X;  3EER A;  2E8E A;  1VEH A;  1MD9 A;  5IFI A;  2P2Q A;  2OBV A;  1ULT A;  4DUZ C;  4RLQ A;  3MGV A;  2D28 C;  2D1Q A;  1QWI A;  4X66 C;  2HOI A;  5BUQ A;  3AF5 A;  1V26 A;  2BJO A;  1T5D X;  2M5O A;  5K85 A;  4BSZ A;  4LF7 C;  1PG4 A;  4PUG A;  1N36 C;  2UXC C;  2A3V A;  5C6K A;  4BC9 A;  5KYT A;  5H9U A;  1IB8 A;  3C28 A;  2KZ0 A;  5BR8 C;  1MDF A;  1M6X C;  5ADZ A;  3AY0 A;  2CU6 A;  3JAM D;  1XMQ C;  2VSQ A;  2WD9 A;  4JI4 C;  5E7Q A;  2JMP A;  5BST A;  2CXC A;  1O9T A;  5FLX D;  1AMU A;  4E0G A;  3I07 A;  2YWB A;  4DV3 C;  1MA7 A;  1RY2 A;  1HNX C;  2VQE C;  3DAY A;  4I9F A;  4DG8 A;  4NOZ A;  4GKJ C;  4CRX A;  4NXM C;  4JI5 C;  1XNR C;  1QM4 A;  2P2F A;  4DR2 C;  3UX2 A;  1MXA A;  1XMO C;  2ZZM A;  2NCL A;  4MTN A;  1HH2 P;  4E10 A;  1F44 A;  1T5H X;  3K6R A;  4B3R C;  3CQ1 A;  5T8T A;  3DLP X;  2HJG A;  4DV1 C;  3CJE A;  4RVO A;  4KTV A;  4A8E A;  3J80 D;  3SQI A;  2PT7 G;  2D7V A;  2QL8 A;  1LQL A;  2D1T A;  5JRH A;  4WV3 A;  4B3M C;  4X64 C;  4DR7 C;  1Z19 A;  1RG9 A;  1FJG C;  2MMA B;  5IWA C;  5AE1 A;  4DCT A;  1BA3 A;  2E7G A;  1O92 A;  1XNQ C;  3ETO A;  1HNZ C;  2YCB A;  3A4I A;  4JI1 C;  4JI8 C;  2PRO A;  1NY8 A;  1WH9 A;  4FUQ A;  4GKK C;  4RVN A;  4LFA C;  1YJ7 A;  1AIH A;  1PG3 A;  1O90 A;  5LCI A;  1N33 C;  3G7S A;  4KHP C;  5A1G A;  4I9G A;  4E0Y A;  5BSU A;  1NZB A;  4K0B A;  1P4E C;  4XX2 A;  3VNR A;  4PZP A;  1AE9 A;  4G37 A;  1GPM A;  4ZLP A;  4L7I A;  4DKS A;  3KXW A;  1USP A;  1N34 C;  3NYQ A;  4DV2 C;  1XRC A;  3S82 A;  4DCV A;  5T8S A;  3T79 A; 
#chains in the Genus database with same CATH homology
 5DCF A;  2CRX A;  1KBU A;  3NKH A;  1PVQ A;  1F44 A;  5DOR A;  1NZB A;  2A3V A;  1MA7 A;  5C6K A;  1M6X A;  2HOF A;  1P4E C;  1Z1B A;  1OUQ A;  1DRG A;  1CRX A;  1XO0 A;  1Q3V A;  1AE9 A;  5CRX A;  3MGV A;  3C28 A;  1PVP A;  4A8E A;  4DKS A;  2HOI A;  1XNS A;  1M6X C;  3VCF A;  4CRX A;  3CRX A;  1A0P A;  1PVR A;  3C29 A;  1FLO A;  1AIH A;  3UXU A;  1P4E A;  1Z19 A;  1P7D A;  1Q3U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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