1FLOA

Flp recombinase-holliday junction complex i
Total Genus 121
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
121
sequence length
422
structure length
405
Chain Sequence
PQFDILCKTPPKVLVRQFVERFERPSGEKIALCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYYSDITDIVSSLQLQFESKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYSIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKTTYTHQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRRI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a Flp recombinase-Holliday junction complex: assembly of an active oligomer by helix swapping.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
molecule keywords SYMMETRIZED FRT DNA SITES
total genus 121
structure length 405
sequence length 422
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2000-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1floA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1floA01
3UXUA 2CRXA 4A8EA 1DRGA 3CRXA 3C28A 4CRXA 1CRXA 3C29A 1XNSA 1M6XA 1Z19A 1F44A 1AIHA 1P7DA 5DCFA 1PVQA 1Q3UA 5CRXA 1AE9A 1NZBA 2A3VA 2HOFA 4DKSA 5C6KA 1MA7A 2HOIA 1A0PA 3MGVA 3NKHA 1M6XC 1Z1BA 1Q3VA 1P4EA 3VCFA 1FLOA 1OUQA 1P4EC 1KBUA 1PVPA 1PVRA 5DORA 1XO0A
chains in the Genus database with same CATH superfamily
2YWBA 1V60A 2CRXA 3A9UA 5DV9A 3C28A 2CY1A 2UXCC 2F4VC 3IPLA 4DR3C 4B3SC 4G37A 2ASBA 4DV2C 1J5EC 5BSRA 2QVZX 5ADZA 1MA7A 1XS3A 5FLXD 4DUYC 1FLOA 5BURA 2DPLA 4JYAC 2Y27A 4NDNA 1XMQC 4IZ6A 1O90A 4B3RC 5A1IA 3TUFA 2EGTA 4DG8A 1K0RA 4PZPA 3DHVA 4OXIA 4GS5A 1RG9A 1XNSA 2P2BA 3LAXA 2VQFC 4KHPC 5BR8C 5T8TA 4EATA 5AE3A 3L8CA 4K0BA 5H9UA 1L2FA 1M6XC 2MM9A 1Z1BA 3RV2A 1I94C 1V25A 4JI2C 2OPLA 2BH1X 3FCCA 1MDBA 1HR0C 4D4GA 2QW0X 1VEHA 4DV4C 4DCUA 4GXQA 4K0KC 4OYCA 1F44A 4JI5C 4ZLPA 4GKJC 1XRBA 1P7LA 1MXCA 1T5HX 2KZFA 3NKHA 4X62C 5AE2A 1XRAA 4DV0C 4RM3A 5DORA 4E0PA 4PUHA 3LGXA 4B3TC 2XR1A 5IT9D 2AYAA 1QM4A 1LCIA 2D1TA 2ONFA 4U5YD 2A3VA 5AE1A 5CZVA 1XMOC 1WCJA 3O2EA 2E0GA 4YHHC 3TQIA 5A19A 2MCQA 4I9FA 4TPSB 5E7QA 2OBVA 3ETOA 4WV3A 3IEUA 1N33C 1WF3A 2VZEA 4PROC 1AIHA 2PN2A 2Z51A 2VSQA 3CQ2A 3LUSA 3ETCA 4XX2A 3UX2A 2KZ0A 1UKKA 2QL8A 4D57A 1Q3VA 3IMLA 5KYVA 4BC9A 2CXCA 4E0GA 1KBUA 4ACOA 4RLFA 2UU9C 4HPVA 2P2FA 2WP0C 2YWCA 2UXBC 1PG4A 4BC7A 3CJEA 3GKUA 3CW9A 1O9TA 1PU1A 3N2QA 2D1QA 3TDEA 4JI6C 1AE9A 4DCVA 1IBLC 4KTVA 4I9GA 1GPMA 4WS9A 2PT7G 3J80D 3J81D 3KXWA 1XHJA 2HJGA 3IEVA 2KDNA 3SO4A 2ZM6C 2P02A 1PA4A 1N2FA 4ISBA 4MTNA 5IWAC 2D1SA 4RVOA 5BUSA 4JI1C 2ZZNA 4FUQA 3CW8X 3NYQA 4BCAA 4LFBC 5BSUA 5KEIA 2QVXX 1ML8A 4LF4C 4LF6C 4R1LA 5BUQA 1XNQC 4LF5C 2V6EA 2P2QA 3UX3A 3R9WA 3GR1A 2D7VA 1IB8A 1MD9A 3E7WA 3S82A 3CRXA 1RY2A 2NCLA 2V7BA 2UXDC 4LFAC 4RM2A 2DHMA 2ATWA 2HOFA 4L2ZA 4DKSA 4DR6C 2HOIA 1V26A 2Y4NA 5JRHA 3I08A 1KKGA 1OUQA 3OTOC 2VQEC 3T79A 4E0JA 3VNQA 4DV1C 4DR2C 5BSVA 3LNVA 1AMUA 4JI7C 3JAMD 4DG9A 4E10A 2UUCC 1N36C 1BA3A 4IR7A 3VNSA 1N32C 3A25A 3L95X 4MH4A 4DR7C 4JV5C 2QVYX 4X66C 3VCFA 4LFCC 1UWDA 3DAYA 5A1GA 2E8EA 4BBYA 2P2MA 1ZB8A 1HNWC 1PVRA 2Y4OA 4NOZA 2UUAC 4GKKC 3TR3A 3A26A 2M5HA 4CRXA 4D56A 3C29A 1QWIA 3A9VA 4JM1A 4RMNA 4DR1C 3LNOA 4BSZA 2YCBA 1MXBA 5K8FA 1XNRC 3AF5A 5IFIA 5LMNC 1FJGC 4DV3C 1WH9A 4DUZC 3E7XA 1P4EC 4DV7C 2D28C 1IBKC 3PROC 2P20A 3R9XA 4X65C 1MKYA 3H2TA 1DRGA 2PROA 1NYEA 1CRXA 4DR4C 2JNVA 1Z19A 4LF7C 1P7DA 4F41A 1PVQA 3CQ3A 1Q3UA 4JI4C 3CQ1A 1N34C 2HHHC 1NZBA 4DR5C 5C6KA 4OX9C 4PHTA 1P4EA 5BSTA 4NXNC 2OPLB 3NI2A 1ULTA 4A8EA 2M5OA 2OO4A 4AQYC 3EQ6A 2ZZMA 3GPCA 1T5DX 3UEBA 1ZB9A 5BSMA 3FCEA 3N54B 4ODJA 4B3MC 4D4IA 2UUBC 4DCSA 3VNRA 2D27A 1XO0A 4R1MA 2E8CA 5LMUC 3UXUA 4KTTA 4ZJZA 1HH2P 3AF6A 3AY0A 3T1YC 5CRXA 4L4QA 3R44A 1O93A 1HNZC 2DYJA 2E5LC 3MGVA 3SQIA 1MXAA 4LF9C 3A4IA 2JMPA 5LCIA 3PBKA 4GXRA 4LF8C 2MMAB 4RVNA 3GR0A 5A2QD 2E8FA 3DLPX 2D1RA 3UZ0A 4DCTA 5BSWA 3EERA 4L7IA 4DV5C 1O92A 5DCFA 1XRCA 4NXMC 4G1IA 2P2JA 1MDFA 4G36A 2WD9A 3RG2A 2CU6A 1A0PA 3I07A 3PESA 4RLQA 1USPB 5T8SA 4R0MA 1JOSA 4PUIA 1NY8A 1PVPA 4JI0C 4FUTA 4E0YA 4JI3C 3UOWA 1VLAA 4YY3C 4JI8C 3B7WA 5K85A 4LE5A 1USPA 5GTDA 2E7GA 1PG3A 1YJ7A 1TH5A 4E0ZA 4FTFA 5KYTA 1HNXC 3K6RA 3C5EA 1M6XA 3NPDA 4F43A 3G7SA 1LQLA 1FUGA 1EGAA 4DWPA 5CZXA 3T1HC 4PUGA 2YX1A 4DV6C 2BJOA 3NYRA 1IBMC 4X64C
chains in the Genus database with same CATH topology
3UXUA 2CRXA 4A8EA 1DRGA 3CRXA 3C28A 4CRXA 1CRXA 3C29A 1XNSA 1M6XA 1Z19A 1F44A 1AIHA 1P7DA 5DCFA 1PVQA 1Q3UA 5CRXA 1AE9A 1NZBA 2A3VA 2HOFA 4DKSA 5C6KA 1MA7A 2HOIA 1A0PA 3MGVA 3NKHA 1M6XC 1Z1BA 1Q3VA 1P4EA 3VCFA 1FLOA 1OUQA 1P4EC 1KBUA 1PVPA 1PVRA 5DORA 1XO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UXU A;  2CRX A;  4A8E A;  1DRG A;  3CRX A;  3C28 A;  4CRX A;  1CRX A;  3C29 A;  1XNS A;  1M6X A;  1Z19 A;  1F44 A;  1AIH A;  1P7D A;  5DCF A;  1PVQ A;  1Q3U A;  5CRX A;  1AE9 A;  1NZB A;  2A3V A;  2HOF A;  4DKS A;  5C6K A;  1MA7 A;  2HOI A;  1A0P A;  3MGV A;  3NKH A;  1M6X C;  1Z1B A;  1Q3V A;  1P4E A;  3VCF A;  1FLO A;  1OUQ A;  1P4E C;  1KBU A;  1PVP A;  1PVR A;  5DOR A;  1XO0 A; 
#chains in the Genus database with same CATH topology
 2YWB A;  1V60 A;  2CRX A;  3A9U A;  5DV9 A;  3C28 A;  2CY1 A;  2UXC C;  2F4V C;  3IPL A;  4DR3 C;  4B3S C;  4G37 A;  2ASB A;  4DV2 C;  1J5E C;  5BSR A;  2QVZ X;  5ADZ A;  1MA7 A;  1XS3 A;  5FLX D;  4DUY C;  1FLO A;  5BUR A;  2DPL A;  4JYA C;  2Y27 A;  4NDN A;  1XMQ C;  4IZ6 A;  1O90 A;  4B3R C;  5A1I A;  3TUF A;  2EGT A;  4DG8 A;  1K0R A;  4PZP A;  3DHV A;  4OXI A;  4GS5 A;  1RG9 A;  1XNS A;  2P2B A;  3LAX A;  2VQF C;  4KHP C;  5BR8 C;  5T8T A;  4EAT A;  5AE3 A;  3L8C A;  4K0B A;  5H9U A;  1L2F A;  1M6X C;  2MM9 A;  1Z1B A;  3RV2 A;  1I94 C;  1V25 A;  4JI2 C;  2OPL A;  2BH1 X;  3FCC A;  1MDB A;  1HR0 C;  4D4G A;  2QW0 X;  1VEH A;  4DV4 C;  4DCU A;  4GXQ A;  4K0K C;  4OYC A;  1F44 A;  4JI5 C;  4ZLP A;  4GKJ C;  1XRB A;  1P7L A;  1MXC A;  1T5H X;  2KZF A;  3NKH A;  4X62 C;  5AE2 A;  1XRA A;  4DV0 C;  4RM3 A;  5DOR A;  4E0P A;  4PUH A;  3LGX A;  4B3T C;  2XR1 A;  5IT9 D;  2AYA A;  1QM4 A;  1LCI A;  2D1T A;  2ONF A;  4U5Y D;  2A3V A;  5AE1 A;  5CZV A;  1XMO C;  1WCJ A;  3O2E A;  2E0G A;  4YHH C;  3TQI A;  5A19 A;  2MCQ A;  4I9F A;  4TPS B;  5E7Q A;  2OBV A;  3ETO A;  4WV3 A;  3IEU A;  1N33 C;  1WF3 A;  2VZE A;  4PRO C;  1AIH A;  2PN2 A;  2Z51 A;  2VSQ A;  3CQ2 A;  3LUS A;  3ETC A;  4XX2 A;  3UX2 A;  2KZ0 A;  1UKK A;  2QL8 A;  4D57 A;  1Q3V A;  3IML A;  5KYV A;  4BC9 A;  2CXC A;  4E0G A;  1KBU A;  4ACO A;  4RLF A;  2UU9 C;  4HPV A;  2P2F A;  2WP0 C;  2YWC A;  2UXB C;  1PG4 A;  4BC7 A;  3CJE A;  3GKU A;  3CW9 A;  1O9T A;  1PU1 A;  3N2Q A;  2D1Q A;  3TDE A;  4JI6 C;  1AE9 A;  4DCV A;  1IBL C;  4KTV A;  4I9G A;  1GPM A;  4WS9 A;  2PT7 G;  3J80 D;  3J81 D;  3KXW A;  1XHJ A;  2HJG A;  3IEV A;  2KDN A;  3SO4 A;  2ZM6 C;  2P02 A;  1PA4 A;  1N2F A;  4ISB A;  4MTN A;  5IWA C;  2D1S A;  4RVO A;  5BUS A;  4JI1 C;  2ZZN A;  4FUQ A;  3CW8 X;  3NYQ A;  4BCA A;  4LFB C;  5BSU A;  5KEI A;  2QVX X;  1ML8 A;  4LF4 C;  4LF6 C;  4R1L A;  5BUQ A;  1XNQ C;  4LF5 C;  2V6E A;  2P2Q A;  3UX3 A;  3R9W A;  3GR1 A;  2D7V A;  1IB8 A;  1MD9 A;  3E7W A;  3S82 A;  3CRX A;  1RY2 A;  2NCL A;  2V7B A;  2UXD C;  4LFA C;  4RM2 A;  2DHM A;  2ATW A;  2HOF A;  4L2Z A;  4DKS A;  4DR6 C;  2HOI A;  1V26 A;  2Y4N A;  5JRH A;  3I08 A;  1KKG A;  1OUQ A;  3OTO C;  2VQE C;  3T79 A;  4E0J A;  3VNQ A;  4DV1 C;  4DR2 C;  5BSV A;  3LNV A;  1AMU A;  4JI7 C;  3JAM D;  4DG9 A;  4E10 A;  2UUC C;  1N36 C;  1BA3 A;  4IR7 A;  3VNS A;  1N32 C;  3A25 A;  3L95 X;  4MH4 A;  4DR7 C;  4JV5 C;  2QVY X;  4X66 C;  3VCF A;  4LFC C;  1UWD A;  3DAY A;  5A1G A;  2E8E A;  4BBY A;  2P2M A;  1ZB8 A;  1HNW C;  1PVR A;  2Y4O A;  4NOZ A;  2UUA C;  4GKK C;  3TR3 A;  3A26 A;  2M5H A;  4CRX A;  4D56 A;  3C29 A;  1QWI A;  3A9V A;  4JM1 A;  4RMN A;  4DR1 C;  3LNO A;  4BSZ A;  2YCB A;  1MXB A;  5K8F A;  1XNR C;  3AF5 A;  5IFI A;  5LMN C;  1FJG C;  4DV3 C;  1WH9 A;  4DUZ C;  3E7X A;  1P4E C;  4DV7 C;  2D28 C;  1IBK C;  3PRO C;  2P20 A;  3R9X A;  4X65 C;  1MKY A;  3H2T A;  1DRG A;  2PRO A;  1NYE A;  1CRX A;  4DR4 C;  2JNV A;  1Z19 A;  4LF7 C;  1P7D A;  4F41 A;  1PVQ A;  3CQ3 A;  1Q3U A;  4JI4 C;  3CQ1 A;  1N34 C;  2HHH C;  1NZB A;  4DR5 C;  5C6K A;  4OX9 C;  4PHT A;  1P4E A;  5BST A;  4NXN C;  2OPL B;  3NI2 A;  1ULT A;  4A8E A;  2M5O A;  2OO4 A;  4AQY C;  3EQ6 A;  2ZZM A;  3GPC A;  1T5D X;  3UEB A;  1ZB9 A;  5BSM A;  3FCE A;  3N54 B;  4ODJ A;  4B3M C;  4D4I A;  2UUB C;  4DCS A;  3VNR A;  2D27 A;  1XO0 A;  4R1M A;  2E8C A;  5LMU C;  3UXU A;  4KTT A;  4ZJZ A;  1HH2 P;  3AF6 A;  3AY0 A;  3T1Y C;  5CRX A;  4L4Q A;  3R44 A;  1O93 A;  1HNZ C;  2DYJ A;  2E5L C;  3MGV A;  3SQI A;  1MXA A;  4LF9 C;  3A4I A;  2JMP A;  5LCI A;  3PBK A;  4GXR A;  4LF8 C;  2MMA B;  4RVN A;  3GR0 A;  5A2Q D;  2E8F A;  3DLP X;  2D1R A;  3UZ0 A;  4DCT A;  5BSW A;  3EER A;  4L7I A;  4DV5 C;  1O92 A;  5DCF A;  1XRC A;  4NXM C;  4G1I A;  2P2J A;  1MDF A;  4G36 A;  2WD9 A;  3RG2 A;  2CU6 A;  1A0P A;  3I07 A;  3PES A;  4RLQ A;  1USP B;  5T8S A;  4R0M A;  1JOS A;  4PUI A;  1NY8 A;  1PVP A;  4JI0 C;  4FUT A;  4E0Y A;  4JI3 C;  3UOW A;  1VLA A;  4YY3 C;  4JI8 C;  3B7W A;  5K85 A;  4LE5 A;  1USP A;  5GTD A;  2E7G A;  1PG3 A;  1YJ7 A;  1TH5 A;  4E0Z A;  4FTF A;  5KYT A;  1HNX C;  3K6R A;  3C5E A;  1M6X A;  3NPD A;  4F43 A;  3G7S A;  1LQL A;  1FUG A;  1EGA A;  4DWP A;  5CZX A;  3T1H C;  4PUG A;  2YX1 A;  4DV6 C;  2BJO A;  3NYR A;  1IBM C;  4X64 C; 
#chains in the Genus database with same CATH homology
 3UXU A;  2CRX A;  4A8E A;  1DRG A;  3CRX A;  3C28 A;  4CRX A;  1CRX A;  3C29 A;  1XNS A;  1M6X A;  1Z19 A;  1F44 A;  1AIH A;  1P7D A;  5DCF A;  1PVQ A;  1Q3U A;  5CRX A;  1AE9 A;  1NZB A;  2A3V A;  2HOF A;  4DKS A;  5C6K A;  1MA7 A;  2HOI A;  1A0P A;  3MGV A;  3NKH A;  1M6X C;  1Z1B A;  1Q3V A;  1P4E A;  3VCF A;  1FLO A;  1OUQ A;  1P4E C;  1KBU A;  1PVP A;  1PVR A;  5DOR A;  1XO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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