1M6XA

Flpe-holliday junction complex
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Symmetrized FRT site
publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
total genus 123
structure length 399
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xA01
5CRXA 1AE9A 1A0PA 1P4EA 1P4EC 2HOFA 3C29A 5C6KA 1PVPA 1FLOA 1F44A 1NZBA 1AIHA 1KBUA 1CRXA 3UXUA 1Q3VA 1P7DA 1Z1BA 3NKHA 3MGVA 2HOIA 5DORA 1XO0A 1DRGA 1Z19A 1M6XA 1MA7A 4A8EA 1PVRA 1M6XC 3VCFA 4CRXA 5DCFA 3CRXA 1PVQA 1OUQA 1Q3UA 3C28A 1XNSA 4DKSA 2A3VA 2CRXA
chains in the Genus database with same CATH superfamily
5T8TA 2XR1A 4WS9A 3A9VA 3TR3A 4JI7C 4JI2C 1YJ7A 4E10A 4DCUA 4F41A 2CXCA 5BSTA 1LCIA 1XRAA 2EGTA 2HHHC 1PU1A 3E7XA 5ADZA 3LAXA 1Q3VA 3AF5A 2D7VA 2YWCA 3AY0A 2HJGA 2M5OA 2Z51A 4X64C 3R9WA 4LF6C 2E0GA 3CW8X 4E0JA 3C28A 4LF5C 2A3VA 4L7IA 4KTTA 2UXDC 4X66C 2ATWA 1PA4A 4FTFA 1P4EC 1N2FA 3CJEA 1FLOA 1WCJA 4D56A 4E0ZA 4NOZA 3C5EA 1Z1BA 2ZM6C 3NYRA 5DORA 4KHPC 5CZVA 3L8CA 1FUGA 3DAYA 4R1LA 4WV3A 1MD9A 2PT7G 3VNQA 3UX3A 1J5EC 1N36C 2YX1A 2VZEA 4GKKC 4JI1C 4B3TC 4A8EA 4DCVA 4D57A 3UOWA 5BURA 2ONFA 1VEHA 4LF8C 1V26A 3LUSA 2D28C 3G7SA 3TQIA 2QL8A 3RG2A 2OPLA 3LNVA 2D1QA 1KBUA 2UU9C 3IMLA 4DUYC 4GS5A 4JI4C 1PVRA 5BUSA 2E8CA 3A25A 4DV3C 1OUQA 1RG9A 4I9FA 4BSZA 4DR4C 3VNRA 3CW9A 2QVYX 3N54B 4LFBC 1UKKA 3N2QA 1XHJA 5A2QD 4JI6C 4PROC 1USPA 4DR3C 4RVOA 1XMQC 4PHTA 1HR0C 2UXBC 1NY8A 5JRHA 2Y27A 3MGVA 2HOIA 4PUIA 4LFAC 1Z19A 4G36A 4HPVA 3NI2A 4ODJA 1M6XA 3LNOA 4DV1C 5A19A 1IBLC 5LMNC 5CRXA 3J81D 3B7WA 4BC7A 2BH1X 4DUZC 2P2MA 1TH5A 3IEUA 4L4QA 3EERA 5IFIA 3CQ2A 2E8EA 3UEBA 1ZB9A 1PG3A 5BUQA 3OTOC 4FUTA 3UZ0A 1NYEA 5H9UA 1IBKC 1DRGA 1XO0A 2VSQA 3T1HC 1MA7A 1MDFA 3T1YC 5KYVA 1WH9A 4IZ6A 4JI8C 4B3RC 2CRXA 4G37A 1AE9A 2Y4OA 1P4EA 4R0MA 3GPCA 5K8FA 2KZFA 2ZZMA 3NPDA 2CU6A 5IWAC 1O92A 3I08A 3KXWA 4JI5C 2MMAB 1N32C 4DV0C 1O93A 4EATA 4D4GA 1N34C 2JNVA 1MXBA 4B3MC 4JM1A 4IR7A 2NCLA 4DR2C 3GKUA 1MDBA 2E7GA 1HH2P 2ASBA 1N33C 1JOSA 4K0BA 4B3SC 1XRBA 1LQLA 2F4VC 2OBVA 3PESA 5A1GA 2QVZX 1XMOC 4LF7C 4FUQA 4MTNA 4AQYC 3R44A 1AIHA 1AMUA 4DR7C 4I9GA 1ULTA 4OXIA 5GTDA 4E0GA 2MCQA 1HNXC 4DV6C 3PBKA 3S82A 1I94C 3E7WA 2WD9A 2UUBC 4DWPA 4RLFA 1BA3A 4LF9C 2P02A 4DG9A 2Y4NA 4OYCA 3I07A 2VQEC 5BSRA 5DCFA 4JI0C 1RY2A 3EQ6A 1A0PA 4JYAC 1MKYA 1XNRC 4DV5C 5LMUC 4E0PA 4MH4A 4X65C 2UXCC 3K6RA 2QVXX 3IPLA 2UUCC 3DLPX 4JV5C 5IT9D 3NKHA 4U5YD 3LGXA 3H2TA 5K85A 4BBYA 4D4IA 3SO4A 4YHHC 2D1SA 3C29A 2P2FA 1NZBA 4DV7C 2M5HA 1V60A 3T79A 1V25A 5BSUA 3FCEA 3NYQA 2DPLA 4DR1C 5E7QA 1EGAA 3AF6A 1HNZC 3CQ3A 4RM2A 1KKGA 4K0KC 2V6EA 2YWBA 3FCCA 1ZB8A 1K0RA 4DR6C 2P2QA 5CZXA 5AE3A 3R9XA 2WP0C 4YY3C 1O90A 2E8FA 4DV4C 1F44A 4DCSA 4LFCC 1WF3A 2DYJA 2JMPA 5BR8C 1IBMC 1T5DX 2P20A 4X62C 4KTVA 1P7DA 5DV9A 2ZZNA 3GR0A 3IEVA 4E0YA 2D1RA 2BJOA 2AYAA 4OX9C 4G1IA 4PUHA 1T5HX 5AE1A 3VNSA 4R1MA 4JI3C 3SQIA 4ZJZA 1XNQC 2MM9A 5AE2A 1CRXA 1MXCA 3JAMD 4RVNA 1XRCA 4GKJC 4NDNA 4NXMC 1PVQA 4PZPA 4NXNC 1XNSA 1XS3A 2D27A 2E5LC 1PVPA 2QW0X 1MXAA 4LE5A 4TPSB 4L2ZA 5BSWA 1IB8A 4F43A 1ML8A 3DHVA 5FLXD 4XX2A 1L2FA 4RLQA 2KDNA 1FJGC 1HNWC 4GXRA 4BC9A 2YCBA 3L95X 3PROC 2P2JA 2DHMA 3O2EA 4DV2C 4CRXA 5LCIA 2OPLB 3GR1A 5BSMA 2UUAC 3A26A 2VQFC 4LF4C 5KYTA 2PN2A 2PROA 1PG4A 3UX2A 4GXQA 3A9UA 1P7LA 3VCFA 3TUFA 2OO4A 3CRXA 1USPB 1Q3UA 5A1IA 5BSVA 2P2BA 4BCAA 1GPMA 4DG8A 4PUGA 2HOFA 2D1TA 3CQ1A 1O9TA 5C6KA 3ETOA 4RM3A 3A4IA 4DCTA 5KEIA 3UXUA 1VLAA 4ACOA 3RV2A 3J80D 3TDEA 2KZ0A 2CY1A 1M6XC 4DR5C 2V7BA 3ETCA 4RMNA 1QWIA 5T8SA 1UWDA 4ZLPA 1QM4A 4DKSA 4ISBA
chains in the Genus database with same CATH topology
5CRXA 1AE9A 1A0PA 1P4EA 1P4EC 2HOFA 3C29A 5C6KA 1PVPA 1FLOA 1F44A 1NZBA 1AIHA 1KBUA 1CRXA 3UXUA 1Q3VA 1P7DA 1Z1BA 3NKHA 3MGVA 2HOIA 5DORA 1XO0A 1DRGA 1Z19A 1M6XA 1MA7A 4A8EA 1PVRA 1M6XC 3VCFA 4CRXA 5DCFA 3CRXA 1PVQA 1OUQA 1Q3UA 3C28A 1XNSA 4DKSA 2A3VA 2CRXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CRX A;  1AE9 A;  1A0P A;  1P4E A;  1P4E C;  2HOF A;  3C29 A;  5C6K A;  1PVP A;  1FLO A;  1F44 A;  1NZB A;  1AIH A;  1KBU A;  1CRX A;  3UXU A;  1Q3V A;  1P7D A;  1Z1B A;  3NKH A;  3MGV A;  2HOI A;  5DOR A;  1XO0 A;  1DRG A;  1Z19 A;  1M6X A;  1MA7 A;  4A8E A;  1PVR A;  1M6X C;  3VCF A;  4CRX A;  5DCF A;  3CRX A;  1PVQ A;  1OUQ A;  1Q3U A;  3C28 A;  1XNS A;  4DKS A;  2A3V A;  2CRX A; 
#chains in the Genus database with same CATH topology
 5T8T A;  2XR1 A;  4WS9 A;  3A9V A;  3TR3 A;  4JI7 C;  4JI2 C;  1YJ7 A;  4E10 A;  4DCU A;  4F41 A;  2CXC A;  5BST A;  1LCI A;  1XRA A;  2EGT A;  2HHH C;  1PU1 A;  3E7X A;  5ADZ A;  3LAX A;  1Q3V A;  3AF5 A;  2D7V A;  2YWC A;  3AY0 A;  2HJG A;  2M5O A;  2Z51 A;  4X64 C;  3R9W A;  4LF6 C;  2E0G A;  3CW8 X;  4E0J A;  3C28 A;  4LF5 C;  2A3V A;  4L7I A;  4KTT A;  2UXD C;  4X66 C;  2ATW A;  1PA4 A;  4FTF A;  1P4E C;  1N2F A;  3CJE A;  1FLO A;  1WCJ A;  4D56 A;  4E0Z A;  4NOZ A;  3C5E A;  1Z1B A;  2ZM6 C;  3NYR A;  5DOR A;  4KHP C;  5CZV A;  3L8C A;  1FUG A;  3DAY A;  4R1L A;  4WV3 A;  1MD9 A;  2PT7 G;  3VNQ A;  3UX3 A;  1J5E C;  1N36 C;  2YX1 A;  2VZE A;  4GKK C;  4JI1 C;  4B3T C;  4A8E A;  4DCV A;  4D57 A;  3UOW A;  5BUR A;  2ONF A;  1VEH A;  4LF8 C;  1V26 A;  3LUS A;  2D28 C;  3G7S A;  3TQI A;  2QL8 A;  3RG2 A;  2OPL A;  3LNV A;  2D1Q A;  1KBU A;  2UU9 C;  3IML A;  4DUY C;  4GS5 A;  4JI4 C;  1PVR A;  5BUS A;  2E8C A;  3A25 A;  4DV3 C;  1OUQ A;  1RG9 A;  4I9F A;  4BSZ A;  4DR4 C;  3VNR A;  3CW9 A;  2QVY X;  3N54 B;  4LFB C;  1UKK A;  3N2Q A;  1XHJ A;  5A2Q D;  4JI6 C;  4PRO C;  1USP A;  4DR3 C;  4RVO A;  1XMQ C;  4PHT A;  1HR0 C;  2UXB C;  1NY8 A;  5JRH A;  2Y27 A;  3MGV A;  2HOI A;  4PUI A;  4LFA C;  1Z19 A;  4G36 A;  4HPV A;  3NI2 A;  4ODJ A;  1M6X A;  3LNO A;  4DV1 C;  5A19 A;  1IBL C;  5LMN C;  5CRX A;  3J81 D;  3B7W A;  4BC7 A;  2BH1 X;  4DUZ C;  2P2M A;  1TH5 A;  3IEU A;  4L4Q A;  3EER A;  5IFI A;  3CQ2 A;  2E8E A;  3UEB A;  1ZB9 A;  1PG3 A;  5BUQ A;  3OTO C;  4FUT A;  3UZ0 A;  1NYE A;  5H9U A;  1IBK C;  1DRG A;  1XO0 A;  2VSQ A;  3T1H C;  1MA7 A;  1MDF A;  3T1Y C;  5KYV A;  1WH9 A;  4IZ6 A;  4JI8 C;  4B3R C;  2CRX A;  4G37 A;  1AE9 A;  2Y4O A;  1P4E A;  4R0M A;  3GPC A;  5K8F A;  2KZF A;  2ZZM A;  3NPD A;  2CU6 A;  5IWA C;  1O92 A;  3I08 A;  3KXW A;  4JI5 C;  2MMA B;  1N32 C;  4DV0 C;  1O93 A;  4EAT A;  4D4G A;  1N34 C;  2JNV A;  1MXB A;  4B3M C;  4JM1 A;  4IR7 A;  2NCL A;  4DR2 C;  3GKU A;  1MDB A;  2E7G A;  1HH2 P;  2ASB A;  1N33 C;  1JOS A;  4K0B A;  4B3S C;  1XRB A;  1LQL A;  2F4V C;  2OBV A;  3PES A;  5A1G A;  2QVZ X;  1XMO C;  4LF7 C;  4FUQ A;  4MTN A;  4AQY C;  3R44 A;  1AIH A;  1AMU A;  4DR7 C;  4I9G A;  1ULT A;  4OXI A;  5GTD A;  4E0G A;  2MCQ A;  1HNX C;  4DV6 C;  3PBK A;  3S82 A;  1I94 C;  3E7W A;  2WD9 A;  2UUB C;  4DWP A;  4RLF A;  1BA3 A;  4LF9 C;  2P02 A;  4DG9 A;  2Y4N A;  4OYC A;  3I07 A;  2VQE C;  5BSR A;  5DCF A;  4JI0 C;  1RY2 A;  3EQ6 A;  1A0P A;  4JYA C;  1MKY A;  1XNR C;  4DV5 C;  5LMU C;  4E0P A;  4MH4 A;  4X65 C;  2UXC C;  3K6R A;  2QVX X;  3IPL A;  2UUC C;  3DLP X;  4JV5 C;  5IT9 D;  3NKH A;  4U5Y D;  3LGX A;  3H2T A;  5K85 A;  4BBY A;  4D4I A;  3SO4 A;  4YHH C;  2D1S A;  3C29 A;  2P2F A;  1NZB A;  4DV7 C;  2M5H A;  1V60 A;  3T79 A;  1V25 A;  5BSU A;  3FCE A;  3NYQ A;  2DPL A;  4DR1 C;  5E7Q A;  1EGA A;  3AF6 A;  1HNZ C;  3CQ3 A;  4RM2 A;  1KKG A;  4K0K C;  2V6E A;  2YWB A;  3FCC A;  1ZB8 A;  1K0R A;  4DR6 C;  2P2Q A;  5CZX A;  5AE3 A;  3R9X A;  2WP0 C;  4YY3 C;  1O90 A;  2E8F A;  4DV4 C;  1F44 A;  4DCS A;  4LFC C;  1WF3 A;  2DYJ A;  2JMP A;  5BR8 C;  1IBM C;  1T5D X;  2P20 A;  4X62 C;  4KTV A;  1P7D A;  5DV9 A;  2ZZN A;  3GR0 A;  3IEV A;  4E0Y A;  2D1R A;  2BJO A;  2AYA A;  4OX9 C;  4G1I A;  4PUH A;  1T5H X;  5AE1 A;  3VNS A;  4R1M A;  4JI3 C;  3SQI A;  4ZJZ A;  1XNQ C;  2MM9 A;  5AE2 A;  1CRX A;  1MXC A;  3JAM D;  4RVN A;  1XRC A;  4GKJ C;  4NDN A;  4NXM C;  1PVQ A;  4PZP A;  4NXN C;  1XNS A;  1XS3 A;  2D27 A;  2E5L C;  1PVP A;  2QW0 X;  1MXA A;  4LE5 A;  4TPS B;  4L2Z A;  5BSW A;  1IB8 A;  4F43 A;  1ML8 A;  3DHV A;  5FLX D;  4XX2 A;  1L2F A;  4RLQ A;  2KDN A;  1FJG C;  1HNW C;  4GXR A;  4BC9 A;  2YCB A;  3L95 X;  3PRO C;  2P2J A;  2DHM A;  3O2E A;  4DV2 C;  4CRX A;  5LCI A;  2OPL B;  3GR1 A;  5BSM A;  2UUA C;  3A26 A;  2VQF C;  4LF4 C;  5KYT A;  2PN2 A;  2PRO A;  1PG4 A;  3UX2 A;  4GXQ A;  3A9U A;  1P7L A;  3VCF A;  3TUF A;  2OO4 A;  3CRX A;  1USP B;  1Q3U A;  5A1I A;  5BSV A;  2P2B A;  4BCA A;  1GPM A;  4DG8 A;  4PUG A;  2HOF A;  2D1T A;  3CQ1 A;  1O9T A;  5C6K A;  3ETO A;  4RM3 A;  3A4I A;  4DCT A;  5KEI A;  3UXU A;  1VLA A;  4ACO A;  3RV2 A;  3J80 D;  3TDE A;  2KZ0 A;  2CY1 A;  1M6X C;  4DR5 C;  2V7B A;  3ETC A;  4RMN A;  1QWI A;  5T8S A;  1UWD A;  4ZLP A;  1QM4 A;  4DKS A;  4ISB A; 
#chains in the Genus database with same CATH homology
 5CRX A;  1AE9 A;  1A0P A;  1P4E A;  1P4E C;  2HOF A;  3C29 A;  5C6K A;  1PVP A;  1FLO A;  1F44 A;  1NZB A;  1AIH A;  1KBU A;  1CRX A;  3UXU A;  1Q3V A;  1P7D A;  1Z1B A;  3NKH A;  3MGV A;  2HOI A;  5DOR A;  1XO0 A;  1DRG A;  1Z19 A;  1M6X A;  1MA7 A;  4A8E A;  1PVR A;  1M6X C;  3VCF A;  4CRX A;  5DCF A;  3CRX A;  1PVQ A;  1OUQ A;  1Q3U A;  3C28 A;  1XNS A;  4DKS A;  2A3V A;  2CRX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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