1M6XA

Flpe-holliday junction complex
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
molecule keywords Symmetrized FRT site
total genus 123
structure length 399
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xA01
1Z1BA 5DORA 3C28A 1PVPA 1PVRA 1CRXA 2A3VA 3NKHA 5CRXA 1Q3UA 4CRXA 2HOFA 5DCFA 1AIHA 3MGVA 1Q3VA 1P4EA 1FLOA 1KBUA 3VCFA 2CRXA 1XNSA 1P4EC 1M6XA 1MA7A 1M6XC 1OUQA 1DRGA 3CRXA 3C29A 2HOIA 3UXUA 1A0PA 1F44A 1NZBA 1AE9A 4A8EA 1P7DA 1PVQA 1XO0A 4DKSA 1Z19A 5C6KA
chains in the Genus database with same CATH superfamily
4F41A 3I08A 2QVYX 1PVRA 3AF6A 1L2FA 4F43A 3IEUA 5DV9A 1IBLC 4LF5C 5KYTA 1P4EA 4NOZA 2D28C 1T5HX 1XMOC 2Y27A 4BC9A 4DV2C 3K6RA 3VNQA 3T1YC 4G37A 2VQFC 3UXUA 3S82A 4DCTA 5H9UA 5AE3A 1WCJA 1IBKC 5BR8C 4B3RC 3A4IA 4DKSA 4OXIA 4E0PA 5K8FA 4DV1C 1T5DX 3FCEA 3A26A 4DR4C 2VSQA 1QM4A 5CRXA 4DV5C 4R1MA 1Q3VA 3TDEA 5BSMA 3E7XA 4PROC 4GXRA 2MM9A 2ATWA 4HPVA 3C29A 1JOSA 3VNSA 1I94C 1V25A 2E8FA 5C6KA 4IR7A 4GXQA 3R9XA 4PHTA 5DORA 1PVPA 3I07A 3IPLA 4JYAC 2WD9A 1FLOA 4D4GA 4ISBA 2KZ0A 2UUBC 2F4VC 3CRXA 2HOIA 4JI5C 3GKUA 1XNRC 2PT7G 1K0RA 4ZJZA 2D27A 3L8CA 2ONFA 3PBKA 2Z51A 4DV4C 3G7SA 3CQ3A 1XRAA 5CZXA 1O90A 1J5EC 3SQIA 1MXBA 1FUGA 5AE1A 1XS3A 4DG9A 4E10A 1MKYA 3PESA 1MD9A 5BSTA 3EQ6A 3LUSA 5T8SA 3A9VA 2BJOA 5KYVA 3NI2A 4B3TC 4JI1C 4DR3C 3R9WA 4R0MA 4RLFA 2PROA 4OYCA 1MXAA 4E0ZA 5A1GA 1XHJA 2VQEC 3NYRA 2HJGA 4DWPA 4E0JA 1M6XA 2CU6A 1PG3A 4JI0C 2UUCC 3KXWA 2ASBA 3GPCA 4PUGA 1NZBA 5A19A 4LFBC 1V60A 4E0YA 4ZLPA 1ZB8A 1XNQC 3UEBA 1TH5A 5CZVA 5BURA 2P02A 1HH2P 3NYQA 4RMNA 4BCAA 4BC7A 4DV7C 3FCCA 2E7GA 3B7WA 5IT9D 2UXDC 2V6EA 4JI8C 4KHPC 4JI3C 4DCVA 3MGVA 3IMLA 1LCIA 3J80D 1FJGC 3GR0A 3CQ1A 4WV3A 1M6XC 4ODJA 4DR7C 4LF8C 3UX3A 1AE9A 5IWAC 3CW8X 5K85A 1P7DA 3EERA 3SO4A 3H2TA 4NXMC 2CY1A 1Z1BA 3VNRA 4B3MC 2ZZNA 3PROC 4D57A 5LMNC 1HR0C 4JM1A 5BUQA 4JI6C 3R44A 2AYAA 4RVNA 3IEVA 4DUYC 1O93A 5BSUA 4JI4C 1P4EC 2UUAC 2Y4OA 3TR3A 4PZPA 1NYEA 3UX2A 1HNWC 2P2JA 4RVOA 4AQYC 4KTVA 2QL8A 5A1IA 4DR2C 2OPLB 4LE5A 1MDBA 3UOWA 5E7QA 1HNZC 4FTFA 1AIHA 2M5HA 4LF7C 4GKJC 4D56A 4DV3C 4FUTA 2E0GA 4GKKC 1N2FA 5LMUC 1XNSA 5AE2A 1OUQA 4IZ6A 3ETCA 2E5LC 2UU9C 4B3SC 2YCBA 3AY0A 4FUQA 1XO0A 2NCLA 2P2BA 4X64C 4PUIA 1VLAA 4DG8A 3LAXA 4L4QA 4U5YD 1ML8A 1USPB 2E8EA 3VCFA 4JI7C 4K0KC 4DV0C 3JAMD 1YJ7A 2KZFA 2DPLA 3T79A 2P2QA 3NPDA 1KKGA 4DR5C 2YWBA 1P7LA 3J81D 4LF6C 2A3VA 4DCUA 2D7VA 1O9TA 5IFIA 4NXNC 2HHHC 4MH4A 1MXCA 1MDFA 4RM3A 1V26A 5GTDA 1XRBA 2OO4A 1UKKA 2P20A 3GR1A 4L2ZA 1XMQC 2JNVA 2MMAB 4RM2A 1IB8A 4DR6C 5A2QD 5JRHA 1N33C 4WS9A 3A9UA 4DUZC 5BUSA 2EGTA 3C5EA 4PUHA 3TQIA 4LFCC 4BSZA 1PG4A 1HNXC 3C28A 4JI2C 4DV6C 1CRXA 4I9GA 3NKHA 5LCIA 2E8CA 3N2QA 5BSVA 3O2EA 3DAYA 3OTOC 5BSRA 2ZM6C 1O92A 2QVZX 2V7BA 4XX2A 1ULTA 4BBYA 3RG2A 5T8TA 4A8EA 1XRCA 3CJEA 3N54B 5KEIA 4LFAC 2JMPA 4CRXA 4TPSB 2YX1A 5FLXD 4LF9C 3DHVA 2CRXA 4RLQA 3T1HC 4NDNA 3LNVA 3CQ2A 2PN2A 3CW9A 1F44A 1A0PA 2WP0C 4ACOA 4X62C 1PA4A 1PVQA 2OPLA 4DCSA 4X65C 2D1QA 1Z19A 3TUFA 3ETOA 2KDNA 2DHMA 1EGAA 4X66C 5BSWA 4OX9C 5ADZA 2D1SA 2QW0X 3AF5A 3DLPX 4YY3C 1IBMC 2UXCC 2ZZMA 4D4IA 4I9FA 2Y4NA 3A25A 3E7WA 3L95X 1RY2A 4EATA 1N32C 4GS5A 4KTTA 1USPA 2HOFA 5DCFA 2XR1A 4R1LA 1WF3A 2BH1X 1AMUA 4G36A 1MA7A 1BA3A 4L7IA 4MTNA 1DRGA 4LF4C 1ZB9A 2P2FA 2OBVA 2P2MA 4G1IA 2QVXX 3LNOA 2DYJA 4E0GA 1Q3UA 1N34C 2VZEA 3UZ0A 4JV5C 4DR1C 4K0BA 1QWIA 1NY8A 1PU1A 4YHHC 1KBUA 3RV2A 1GPMA 1RG9A 1UWDA 1WH9A 1N36C 2CXCA 2MCQA 1LQLA 2D1TA 2UXBC 1VEHA 2D1RA 2YWCA 3LGXA 2M5OA
chains in the Genus database with same CATH topology
1Z1BA 5DORA 3C28A 1PVPA 1PVRA 1CRXA 2A3VA 3NKHA 5CRXA 1Q3UA 4CRXA 2HOFA 5DCFA 1AIHA 3MGVA 1Q3VA 1P4EA 1FLOA 1KBUA 3VCFA 2CRXA 1XNSA 1P4EC 1M6XA 1MA7A 1M6XC 1OUQA 1DRGA 3CRXA 3C29A 2HOIA 3UXUA 1A0PA 1F44A 1NZBA 1AE9A 4A8EA 1P7DA 1PVQA 1XO0A 4DKSA 1Z19A 5C6KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z1B A;  5DOR A;  3C28 A;  1PVP A;  1PVR A;  1CRX A;  2A3V A;  3NKH A;  5CRX A;  1Q3U A;  4CRX A;  2HOF A;  5DCF A;  1AIH A;  3MGV A;  1Q3V A;  1P4E A;  1FLO A;  1KBU A;  3VCF A;  2CRX A;  1XNS A;  1P4E C;  1M6X A;  1MA7 A;  1M6X C;  1OUQ A;  1DRG A;  3CRX A;  3C29 A;  2HOI A;  3UXU A;  1A0P A;  1F44 A;  1NZB A;  1AE9 A;  4A8E A;  1P7D A;  1PVQ A;  1XO0 A;  4DKS A;  1Z19 A;  5C6K A; 
#chains in the Genus database with same CATH topology
 4F41 A;  3I08 A;  2QVY X;  1PVR A;  3AF6 A;  1L2F A;  4F43 A;  3IEU A;  5DV9 A;  1IBL C;  4LF5 C;  5KYT A;  1P4E A;  4NOZ A;  2D28 C;  1T5H X;  1XMO C;  2Y27 A;  4BC9 A;  4DV2 C;  3K6R A;  3VNQ A;  3T1Y C;  4G37 A;  2VQF C;  3UXU A;  3S82 A;  4DCT A;  5H9U A;  5AE3 A;  1WCJ A;  1IBK C;  5BR8 C;  4B3R C;  3A4I A;  4DKS A;  4OXI A;  4E0P A;  5K8F A;  4DV1 C;  1T5D X;  3FCE A;  3A26 A;  4DR4 C;  2VSQ A;  1QM4 A;  5CRX A;  4DV5 C;  4R1M A;  1Q3V A;  3TDE A;  5BSM A;  3E7X A;  4PRO C;  4GXR A;  2MM9 A;  2ATW A;  4HPV A;  3C29 A;  1JOS A;  3VNS A;  1I94 C;  1V25 A;  2E8F A;  5C6K A;  4IR7 A;  4GXQ A;  3R9X A;  4PHT A;  5DOR A;  1PVP A;  3I07 A;  3IPL A;  4JYA C;  2WD9 A;  1FLO A;  4D4G A;  4ISB A;  2KZ0 A;  2UUB C;  2F4V C;  3CRX A;  2HOI A;  4JI5 C;  3GKU A;  1XNR C;  2PT7 G;  1K0R A;  4ZJZ A;  2D27 A;  3L8C A;  2ONF A;  3PBK A;  2Z51 A;  4DV4 C;  3G7S A;  3CQ3 A;  1XRA A;  5CZX A;  1O90 A;  1J5E C;  3SQI A;  1MXB A;  1FUG A;  5AE1 A;  1XS3 A;  4DG9 A;  4E10 A;  1MKY A;  3PES A;  1MD9 A;  5BST A;  3EQ6 A;  3LUS A;  5T8S A;  3A9V A;  2BJO A;  5KYV A;  3NI2 A;  4B3T C;  4JI1 C;  4DR3 C;  3R9W A;  4R0M A;  4RLF A;  2PRO A;  4OYC A;  1MXA A;  4E0Z A;  5A1G A;  1XHJ A;  2VQE C;  3NYR A;  2HJG A;  4DWP A;  4E0J A;  1M6X A;  2CU6 A;  1PG3 A;  4JI0 C;  2UUC C;  3KXW A;  2ASB A;  3GPC A;  4PUG A;  1NZB A;  5A19 A;  4LFB C;  1V60 A;  4E0Y A;  4ZLP A;  1ZB8 A;  1XNQ C;  3UEB A;  1TH5 A;  5CZV A;  5BUR A;  2P02 A;  1HH2 P;  3NYQ A;  4RMN A;  4BCA A;  4BC7 A;  4DV7 C;  3FCC A;  2E7G A;  3B7W A;  5IT9 D;  2UXD C;  2V6E A;  4JI8 C;  4KHP C;  4JI3 C;  4DCV A;  3MGV A;  3IML A;  1LCI A;  3J80 D;  1FJG C;  3GR0 A;  3CQ1 A;  4WV3 A;  1M6X C;  4ODJ A;  4DR7 C;  4LF8 C;  3UX3 A;  1AE9 A;  5IWA C;  3CW8 X;  5K85 A;  1P7D A;  3EER A;  3SO4 A;  3H2T A;  4NXM C;  2CY1 A;  1Z1B A;  3VNR A;  4B3M C;  2ZZN A;  3PRO C;  4D57 A;  5LMN C;  1HR0 C;  4JM1 A;  5BUQ A;  4JI6 C;  3R44 A;  2AYA A;  4RVN A;  3IEV A;  4DUY C;  1O93 A;  5BSU A;  4JI4 C;  1P4E C;  2UUA C;  2Y4O A;  3TR3 A;  4PZP A;  1NYE A;  3UX2 A;  1HNW C;  2P2J A;  4RVO A;  4AQY C;  4KTV A;  2QL8 A;  5A1I A;  4DR2 C;  2OPL B;  4LE5 A;  1MDB A;  3UOW A;  5E7Q A;  1HNZ C;  4FTF A;  1AIH A;  2M5H A;  4LF7 C;  4GKJ C;  4D56 A;  4DV3 C;  4FUT A;  2E0G A;  4GKK C;  1N2F A;  5LMU C;  1XNS A;  5AE2 A;  1OUQ A;  4IZ6 A;  3ETC A;  2E5L C;  2UU9 C;  4B3S C;  2YCB A;  3AY0 A;  4FUQ A;  1XO0 A;  2NCL A;  2P2B A;  4X64 C;  4PUI A;  1VLA A;  4DG8 A;  3LAX A;  4L4Q A;  4U5Y D;  1ML8 A;  1USP B;  2E8E A;  3VCF A;  4JI7 C;  4K0K C;  4DV0 C;  3JAM D;  1YJ7 A;  2KZF A;  2DPL A;  3T79 A;  2P2Q A;  3NPD A;  1KKG A;  4DR5 C;  2YWB A;  1P7L A;  3J81 D;  4LF6 C;  2A3V A;  4DCU A;  2D7V A;  1O9T A;  5IFI A;  4NXN C;  2HHH C;  4MH4 A;  1MXC A;  1MDF A;  4RM3 A;  1V26 A;  5GTD A;  1XRB A;  2OO4 A;  1UKK A;  2P20 A;  3GR1 A;  4L2Z A;  1XMQ C;  2JNV A;  2MMA B;  4RM2 A;  1IB8 A;  4DR6 C;  5A2Q D;  5JRH A;  1N33 C;  4WS9 A;  3A9U A;  4DUZ C;  5BUS A;  2EGT A;  3C5E A;  4PUH A;  3TQI A;  4LFC C;  4BSZ A;  1PG4 A;  1HNX C;  3C28 A;  4JI2 C;  4DV6 C;  1CRX A;  4I9G A;  3NKH A;  5LCI A;  2E8C A;  3N2Q A;  5BSV A;  3O2E A;  3DAY A;  3OTO C;  5BSR A;  2ZM6 C;  1O92 A;  2QVZ X;  2V7B A;  4XX2 A;  1ULT A;  4BBY A;  3RG2 A;  5T8T A;  4A8E A;  1XRC A;  3CJE A;  3N54 B;  5KEI A;  4LFA C;  2JMP A;  4CRX A;  4TPS B;  2YX1 A;  5FLX D;  4LF9 C;  3DHV A;  2CRX A;  4RLQ A;  3T1H C;  4NDN A;  3LNV A;  3CQ2 A;  2PN2 A;  3CW9 A;  1F44 A;  1A0P A;  2WP0 C;  4ACO A;  4X62 C;  1PA4 A;  1PVQ A;  2OPL A;  4DCS A;  4X65 C;  2D1Q A;  1Z19 A;  3TUF A;  3ETO A;  2KDN A;  2DHM A;  1EGA A;  4X66 C;  5BSW A;  4OX9 C;  5ADZ A;  2D1S A;  2QW0 X;  3AF5 A;  3DLP X;  4YY3 C;  1IBM C;  2UXC C;  2ZZM A;  4D4I A;  4I9F A;  2Y4N A;  3A25 A;  3E7W A;  3L95 X;  1RY2 A;  4EAT A;  1N32 C;  4GS5 A;  4KTT A;  1USP A;  2HOF A;  5DCF A;  2XR1 A;  4R1L A;  1WF3 A;  2BH1 X;  1AMU A;  4G36 A;  1MA7 A;  1BA3 A;  4L7I A;  4MTN A;  1DRG A;  4LF4 C;  1ZB9 A;  2P2F A;  2OBV A;  2P2M A;  4G1I A;  2QVX X;  3LNO A;  2DYJ A;  4E0G A;  1Q3U A;  1N34 C;  2VZE A;  3UZ0 A;  4JV5 C;  4DR1 C;  4K0B A;  1QWI A;  1NY8 A;  1PU1 A;  4YHH C;  1KBU A;  3RV2 A;  1GPM A;  1RG9 A;  1UWD A;  1WH9 A;  1N36 C;  2CXC A;  2MCQ A;  1LQL A;  2D1T A;  2UXB C;  1VEH A;  2D1R A;  2YWC A;  3LGX A;  2M5O A; 
#chains in the Genus database with same CATH homology
 1Z1B A;  5DOR A;  3C28 A;  1PVP A;  1PVR A;  1CRX A;  2A3V A;  3NKH A;  5CRX A;  1Q3U A;  4CRX A;  2HOF A;  5DCF A;  1AIH A;  3MGV A;  1Q3V A;  1P4E A;  1FLO A;  1KBU A;  3VCF A;  2CRX A;  1XNS A;  1P4E C;  1M6X A;  1MA7 A;  1M6X C;  1OUQ A;  1DRG A;  3CRX A;  3C29 A;  2HOI A;  3UXU A;  1A0P A;  1F44 A;  1NZB A;  1AE9 A;  4A8E A;  1P7D A;  1PVQ A;  1XO0 A;  4DKS A;  1Z19 A;  5C6K A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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