1M6XA

Flpe-holliday junction complex
Total Genus 123
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
123
sequence length
421
structure length
399
Chain Sequence
SQFDILCKTPPKVLVRQFVERFERPSGEKIASCAAELTYLCWMITHNGTAIKRATFMSYNTIISNSLSFDIVNKSLQFKYKTQKATILEASLKKLIPAWEFTIIPYNGSDITDIVSSLQLQFESGNSHSKKMLKALLSEGESIWEITEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIKNVDPKSFKLVQNKYLGVIIQCLVTETKTSVSRHIYFFSARGRIDPLVYLDEFLRNSEPVLKRVNRTGNSSSNKQEYQLLKDNLVRSYNKALKKNAPYPIFAIKNGPKSHIGRHLMTSFLSMKGLTELTNVVGNWSDKQITAIPDHYFALVSRYYAYDPISKEMIALKDETNPIEEWQHIEQLKGSAEGSIRYPAWNGIISQEVLDYLSSYINRR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Plasticity of the Flp-Holliday Junction Complex
pubmed doi rcsb
source organism Saccharomyces cerevisiae
molecule tags Ligase, lyase/dna
molecule keywords Symmetrized FRT site
total genus 123
structure length 399
sequence length 421
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-07-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03930 Flp_N Recombinase Flp protein N-terminus
A PF05202 Flp_C Recombinase Flp protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 1m6xA02
3.30.300.80 Alpha Beta 2-Layer Sandwich GMP Synthetase; Chain A, domain 3 FLP Recombinase, lambda integrase-like, N-terminal domain (domain 1) 1m6xA01
3C29A 1M6XC 4CRXA 1KBUA 1AIHA 1AE9A 5DORA 1F44A 2A3VA 3VCFA 1Z19A 1A0PA 2CRXA 1XO0A 1P4EC 3NKHA 2HOFA 2HOIA 1PVQA 3MGVA 1Q3VA 3CRXA 1Z1BA 1XNSA 5DCFA 1DRGA 3UXUA 1PVRA 5CRXA 1OUQA 1P4EA 1FLOA 1P7DA 5C6KA 1CRXA 1MA7A 3C28A 1M6XA 1Q3UA 1NZBA 4A8EA 1PVPA 4DKSA
chains in the Genus database with same CATH superfamily
1V60A 4WV3A 1AE9A 1XRCA 5JRHA 4JM1A 2D1SA 5GTDA 3NYRA 1O92A 1UWDA 4LE5A 4DWPA 2D1QA 4D57A 4WS9A 1PVRA 4BBYA 1P4EA 3TQIA 1MA7A 4X66C 4DUZC 2PN2A 4DV5C 5LCIA 1PVPA 1ZB9A 4FTFA 3C5EA 5BSWA 3CQ3A 3CQ1A 4NDNA 4PROC 2CXCA 4E10A 4XX2A 4E0ZA 2UUAC 4OX9C 4DV7C 1YJ7A 3O2EA 3IEVA 1HNWC 1XNQC 4RLFA 3PESA 3TR3A 2PROA 3K6RA 2DYJA 1AMUA 5ADZA 3I08A 4D56A 3AF5A 1KBUA 2E8FA 1F44A 1V26A 2CRXA 2UU9C 4LF7C 1O93A 2ZM6C 3A9UA 2VQFC 1MXCA 3RG2A 4RMNA 4LFCC 3A9VA 1ML8A 4L4QA 4GXQA 5H9UA 1K0RA 1NZBA 4R1MA 4OYCA 1P7LA 4LF9C 3AF6A 1T5DX 3T79A 4CRXA 1USPB 4DG8A 1GPMA 1FJGC 5DORA 5KEIA 3LUSA 4L2ZA 1A0PA 3B7WA 1NYEA 4ISBA 1XNSA 4F43A 3S82A 3A26A 2CY1A 1VEHA 4D4IA 5AE1A 2ZZNA 4DV1C 1IBMC 4L7IA 4K0BA 4G36A 4JI5C 1XO0A 2YCBA 4HPVA 2MCQA 2HOIA 3A25A 2OPLB 4KTTA 1DRGA 2BJOA 5IWAC 1PG4A 2QVXX 2P20A 5IT9D 2ASBA 5LMNC 4AQYC 1HH2P 2NCLA 3N54B 4KTVA 4BCAA 2UXBC 1LQLA 4E0PA 3PROC 1MDBA 1IB8A 2VZEA 4B3SC 4JI6C 2HJGA 1BA3A 4K0KC 1T5HX 4JI2C 4RVOA 3N2QA 1FLOA 2ZZMA 3KXWA 4JV5C 4RM2A 4LF6C 3ETOA 1HNZC 3UX3A 2PT7G 2V7BA 2VSQA 3IMLA 1MD9A 1XHJA 1QWIA 1XRBA 5BSVA 2WP0C 3L95X 2KZ0A 3IPLA 4GS5A 1MXBA 4NOZA 2ONFA 2UUCC 1WF3A 2OBVA 4PUHA 1Q3VA 3G7SA 2KZFA 4RLQA 3TUFA 3ETCA 3GPCA 2F4VC 1N2FA 2MMAB 2E8CA 2YWBA 4DCSA 4MTNA 3NI2A 5FLXD 4DKSA 4F41A 3C29A 1AIHA 2P2MA 3GR1A 4JI7C 1L2FA 2D28C 5KYVA 4ACOA 4BSZA 2Y27A 4RM3A 2UXCC 4G37A 1LCIA 5DV9A 4NXMC 1XMQC 3LAXA 1UKKA 3DLPX 4A8EA 4DR3C 2E5LC 4DV2C 4FUQA 4LF5C 4U5YD 4DR5C 2YWCA 1PVQA 4D4GA 4NXNC 3J80D 4PHTA 2V6EA 5CRXA 3NYQA 4OXIA 3SO4A 5BURA 1MDFA 1P7DA 4DR7C 4PUGA 1CRXA 4FUTA 3R9XA 2HHHC 3E7XA 3I07A 3UOWA 5LMUC 3UZ0A 4DV3C 4DCTA 1M6XC 2M5OA 2DPLA 2E0GA 4X64C 3IEUA 3LNVA 2ATWA 4LF4C 3UXUA 4BC7A 1XMOC 2KDNA 4X62C 4IZ6A 1M6XA 4DG9A 2BH1X 1NY8A 4EATA 4E0YA 4DCVA 2AYAA 2MM9A 4DR6C 3NPDA 3DAYA 4YHHC 3NKHA 5T8TA 5IFIA 3CW8X 4R0MA 1N34C 2E7GA 3J81D 1OUQA 3GKUA 3GR0A 5C6KA 1WH9A 5BUQA 4I9FA 4DCUA 3LGXA 5CZVA 3FCEA 4B3MC 3LNOA 3E7WA 5A19A 3R44A 3FCCA 2Y4NA 4DR1C 1V25A 5A2QD 1JOSA 2JNVA 2QVZX 1Z1BA 1J5EC 4E0JA 3L8CA 5BUSA 2D27A 1ULTA 2JMPA 5BSTA 4LFAC 5A1GA 4GKKC 1TH5A 3C28A 4X65C 1Q3UA 2D7VA 2P2BA 4LFBC 4PZPA 3H2TA 1N33C 4GKJC 2A3VA 1N36C 1WCJA 4JI8C 4DUYC 2P2QA 1N32C 5AE2A 3DHVA 3SQIA 2VQEC 4JI4C 5BSUA 2QW0X 4DV4C 1HNXC 4JI3C 1O9TA 2M5HA 4RVNA 1O90A 5KYTA 3UX2A 4GXRA 2UUBC 3T1HC 2D1TA 4R1LA 1PU1A 4B3RC 5E7QA 3CJEA 4B3TC 3VCFA 2Z51A 1IBLC 4JI1C 4ODJA 1PA4A 3EERA 3AY0A 4ZLPA 2OPLA 3T1YC 3MGVA 2P2FA 3CRXA 1ZB8A 2D1RA 1HR0C 4IR7A 4BC9A 2DHMA 1RY2A 3UEBA 4E0GA 5BSRA 2OO4A 1RG9A 2EGTA 5BSMA 3CQ2A 4I9GA 2XR1A 4TPSB 4ZJZA 3R9WA 4YY3C 3JAMD 1XRAA 1P4EC 2CU6A 4JI0C 3OTOC 5AE3A 2YX1A 3VNSA 3EQ6A 4LF8C 4DR4C 5BR8C 1XNRC 4G1IA 5K8FA 5DCFA 4MH4A 4KHPC 1XS3A 5CZXA 1I94C 2P02A 2E8EA 2Y4OA 1MKYA 2P2JA 4DV6C 3RV2A 1VLAA 3PBKA 3TDEA 4DR2C 1Z19A 1FUGA 3VNRA 1USPA 5K85A 2HOFA 3CW9A 4JYAC 2QVYX 1MXAA 5T8SA 1EGAA 2QL8A 4DV0C 1IBKC 3VNQA 2UXDC 1PG3A 1QM4A 2WD9A 4PUIA 5A1IA 3A4IA 1KKGA
chains in the Genus database with same CATH topology
3C29A 1M6XC 4CRXA 1KBUA 1AIHA 1AE9A 5DORA 1F44A 2A3VA 3VCFA 1Z19A 1A0PA 2CRXA 1XO0A 1P4EC 3NKHA 2HOFA 2HOIA 1PVQA 3MGVA 1Q3VA 3CRXA 1Z1BA 1XNSA 5DCFA 1DRGA 3UXUA 1PVRA 5CRXA 1OUQA 1P4EA 1FLOA 1P7DA 5C6KA 1CRXA 1MA7A 3C28A 1M6XA 1Q3UA 1NZBA 4A8EA 1PVPA 4DKSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C29 A;  1M6X C;  4CRX A;  1KBU A;  1AIH A;  1AE9 A;  5DOR A;  1F44 A;  2A3V A;  3VCF A;  1Z19 A;  1A0P A;  2CRX A;  1XO0 A;  1P4E C;  3NKH A;  2HOF A;  2HOI A;  1PVQ A;  3MGV A;  1Q3V A;  3CRX A;  1Z1B A;  1XNS A;  5DCF A;  1DRG A;  3UXU A;  1PVR A;  5CRX A;  1OUQ A;  1P4E A;  1FLO A;  1P7D A;  5C6K A;  1CRX A;  1MA7 A;  3C28 A;  1M6X A;  1Q3U A;  1NZB A;  4A8E A;  1PVP A;  4DKS A; 
#chains in the Genus database with same CATH topology
 1V60 A;  4WV3 A;  1AE9 A;  1XRC A;  5JRH A;  4JM1 A;  2D1S A;  5GTD A;  3NYR A;  1O92 A;  1UWD A;  4LE5 A;  4DWP A;  2D1Q A;  4D57 A;  4WS9 A;  1PVR A;  4BBY A;  1P4E A;  3TQI A;  1MA7 A;  4X66 C;  4DUZ C;  2PN2 A;  4DV5 C;  5LCI A;  1PVP A;  1ZB9 A;  4FTF A;  3C5E A;  5BSW A;  3CQ3 A;  3CQ1 A;  4NDN A;  4PRO C;  2CXC A;  4E10 A;  4XX2 A;  4E0Z A;  2UUA C;  4OX9 C;  4DV7 C;  1YJ7 A;  3O2E A;  3IEV A;  1HNW C;  1XNQ C;  4RLF A;  3PES A;  3TR3 A;  2PRO A;  3K6R A;  2DYJ A;  1AMU A;  5ADZ A;  3I08 A;  4D56 A;  3AF5 A;  1KBU A;  2E8F A;  1F44 A;  1V26 A;  2CRX A;  2UU9 C;  4LF7 C;  1O93 A;  2ZM6 C;  3A9U A;  2VQF C;  1MXC A;  3RG2 A;  4RMN A;  4LFC C;  3A9V A;  1ML8 A;  4L4Q A;  4GXQ A;  5H9U A;  1K0R A;  1NZB A;  4R1M A;  4OYC A;  1P7L A;  4LF9 C;  3AF6 A;  1T5D X;  3T79 A;  4CRX A;  1USP B;  4DG8 A;  1GPM A;  1FJG C;  5DOR A;  5KEI A;  3LUS A;  4L2Z A;  1A0P A;  3B7W A;  1NYE A;  4ISB A;  1XNS A;  4F43 A;  3S82 A;  3A26 A;  2CY1 A;  1VEH A;  4D4I A;  5AE1 A;  2ZZN A;  4DV1 C;  1IBM C;  4L7I A;  4K0B A;  4G36 A;  4JI5 C;  1XO0 A;  2YCB A;  4HPV A;  2MCQ A;  2HOI A;  3A25 A;  2OPL B;  4KTT A;  1DRG A;  2BJO A;  5IWA C;  1PG4 A;  2QVX X;  2P20 A;  5IT9 D;  2ASB A;  5LMN C;  4AQY C;  1HH2 P;  2NCL A;  3N54 B;  4KTV A;  4BCA A;  2UXB C;  1LQL A;  4E0P A;  3PRO C;  1MDB A;  1IB8 A;  2VZE A;  4B3S C;  4JI6 C;  2HJG A;  1BA3 A;  4K0K C;  1T5H X;  4JI2 C;  4RVO A;  3N2Q A;  1FLO A;  2ZZM A;  3KXW A;  4JV5 C;  4RM2 A;  4LF6 C;  3ETO A;  1HNZ C;  3UX3 A;  2PT7 G;  2V7B A;  2VSQ A;  3IML A;  1MD9 A;  1XHJ A;  1QWI A;  1XRB A;  5BSV A;  2WP0 C;  3L95 X;  2KZ0 A;  3IPL A;  4GS5 A;  1MXB A;  4NOZ A;  2ONF A;  2UUC C;  1WF3 A;  2OBV A;  4PUH A;  1Q3V A;  3G7S A;  2KZF A;  4RLQ A;  3TUF A;  3ETC A;  3GPC A;  2F4V C;  1N2F A;  2MMA B;  2E8C A;  2YWB A;  4DCS A;  4MTN A;  3NI2 A;  5FLX D;  4DKS A;  4F41 A;  3C29 A;  1AIH A;  2P2M A;  3GR1 A;  4JI7 C;  1L2F A;  2D28 C;  5KYV A;  4ACO A;  4BSZ A;  2Y27 A;  4RM3 A;  2UXC C;  4G37 A;  1LCI A;  5DV9 A;  4NXM C;  1XMQ C;  3LAX A;  1UKK A;  3DLP X;  4A8E A;  4DR3 C;  2E5L C;  4DV2 C;  4FUQ A;  4LF5 C;  4U5Y D;  4DR5 C;  2YWC A;  1PVQ A;  4D4G A;  4NXN C;  3J80 D;  4PHT A;  2V6E A;  5CRX A;  3NYQ A;  4OXI A;  3SO4 A;  5BUR A;  1MDF A;  1P7D A;  4DR7 C;  4PUG A;  1CRX A;  4FUT A;  3R9X A;  2HHH C;  3E7X A;  3I07 A;  3UOW A;  5LMU C;  3UZ0 A;  4DV3 C;  4DCT A;  1M6X C;  2M5O A;  2DPL A;  2E0G A;  4X64 C;  3IEU A;  3LNV A;  2ATW A;  4LF4 C;  3UXU A;  4BC7 A;  1XMO C;  2KDN A;  4X62 C;  4IZ6 A;  1M6X A;  4DG9 A;  2BH1 X;  1NY8 A;  4EAT A;  4E0Y A;  4DCV A;  2AYA A;  2MM9 A;  4DR6 C;  3NPD A;  3DAY A;  4YHH C;  3NKH A;  5T8T A;  5IFI A;  3CW8 X;  4R0M A;  1N34 C;  2E7G A;  3J81 D;  1OUQ A;  3GKU A;  3GR0 A;  5C6K A;  1WH9 A;  5BUQ A;  4I9F A;  4DCU A;  3LGX A;  5CZV A;  3FCE A;  4B3M C;  3LNO A;  3E7W A;  5A19 A;  3R44 A;  3FCC A;  2Y4N A;  4DR1 C;  1V25 A;  5A2Q D;  1JOS A;  2JNV A;  2QVZ X;  1Z1B A;  1J5E C;  4E0J A;  3L8C A;  5BUS A;  2D27 A;  1ULT A;  2JMP A;  5BST A;  4LFA C;  5A1G A;  4GKK C;  1TH5 A;  3C28 A;  4X65 C;  1Q3U A;  2D7V A;  2P2B A;  4LFB C;  4PZP A;  3H2T A;  1N33 C;  4GKJ C;  2A3V A;  1N36 C;  1WCJ A;  4JI8 C;  4DUY C;  2P2Q A;  1N32 C;  5AE2 A;  3DHV A;  3SQI A;  2VQE C;  4JI4 C;  5BSU A;  2QW0 X;  4DV4 C;  1HNX C;  4JI3 C;  1O9T A;  2M5H A;  4RVN A;  1O90 A;  5KYT A;  3UX2 A;  4GXR A;  2UUB C;  3T1H C;  2D1T A;  4R1L A;  1PU1 A;  4B3R C;  5E7Q A;  3CJE A;  4B3T C;  3VCF A;  2Z51 A;  1IBL C;  4JI1 C;  4ODJ A;  1PA4 A;  3EER A;  3AY0 A;  4ZLP A;  2OPL A;  3T1Y C;  3MGV A;  2P2F A;  3CRX A;  1ZB8 A;  2D1R A;  1HR0 C;  4IR7 A;  4BC9 A;  2DHM A;  1RY2 A;  3UEB A;  4E0G A;  5BSR A;  2OO4 A;  1RG9 A;  2EGT A;  5BSM A;  3CQ2 A;  4I9G A;  2XR1 A;  4TPS B;  4ZJZ A;  3R9W A;  4YY3 C;  3JAM D;  1XRA A;  1P4E C;  2CU6 A;  4JI0 C;  3OTO C;  5AE3 A;  2YX1 A;  3VNS A;  3EQ6 A;  4LF8 C;  4DR4 C;  5BR8 C;  1XNR C;  4G1I A;  5K8F A;  5DCF A;  4MH4 A;  4KHP C;  1XS3 A;  5CZX A;  1I94 C;  2P02 A;  2E8E A;  2Y4O A;  1MKY A;  2P2J A;  4DV6 C;  3RV2 A;  1VLA A;  3PBK A;  3TDE A;  4DR2 C;  1Z19 A;  1FUG A;  3VNR A;  1USP A;  5K85 A;  2HOF A;  3CW9 A;  4JYA C;  2QVY X;  1MXA A;  5T8S A;  1EGA A;  2QL8 A;  4DV0 C;  1IBK C;  3VNQ A;  2UXD C;  1PG3 A;  1QM4 A;  2WD9 A;  4PUI A;  5A1I A;  3A4I A;  1KKG A; 
#chains in the Genus database with same CATH homology
 3C29 A;  1M6X C;  4CRX A;  1KBU A;  1AIH A;  1AE9 A;  5DOR A;  1F44 A;  2A3V A;  3VCF A;  1Z19 A;  1A0P A;  2CRX A;  1XO0 A;  1P4E C;  3NKH A;  2HOF A;  2HOI A;  1PVQ A;  3MGV A;  1Q3V A;  3CRX A;  1Z1B A;  1XNS A;  5DCF A;  1DRG A;  3UXU A;  1PVR A;  5CRX A;  1OUQ A;  1P4E A;  1FLO A;  1P7D A;  5C6K A;  1CRX A;  1MA7 A;  3C28 A;  1M6X A;  1Q3U A;  1NZB A;  4A8E A;  1PVP A;  4DKS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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