5C6KA

Bacteriophage p2 integrase catalytic domain
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
165
structure length
165
Chain Sequence
TGYLTQEEIALLLAALDGDNKKIAILCLSTGARWGEAARLKAENIIHNRVTFVKTKTNKPRTVPISEAVAKMIADNKRGFLFPDADYPRFRRTMKAIKPDLPMGQATHALRHSFATHFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAISLNPLRGGTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Integrase
publication title Crystal structure of the bacteriophage P2 integrase catalytic domain.
pubmed doi rcsb
source organism Enterobacteria phage p2
molecule tags Hydrolase
total genus 51
structure length 165
sequence length 165
chains with identical sequence B
ec nomenclature
pdb deposition date 2015-06-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00589 Phage_integrase Phage integrase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 5c6kA00
5DORA 1F44A 1DRGA 5DCFA 1P4EA 3NKHA 1Z1BA 1M6XC 1AIHA 3UXUA 3C28A 1PVPA 4DKSA 1P4EC 1XO0A 2A3VA 3C29A 1XNSA 2HOIA 1AE9A 1Z19A 4A8EA 1MA7A 1FLOA 1OUQA 1PVQA 5CRXA 1KBUA 4CRXA 1NZBA 3VCFA 5C6KA 3MGVA 1A0PA 1Q3VA 1P7DA 1Q3UA 1M6XA 3CRXA 1CRXA 1PVRA 2CRXA 2HOFA
chains in the Genus database with same CATH superfamily
5DORA 1F44A 1DRGA 5DCFA 1P4EA 3NKHA 1Z1BA 1M6XC 1AIHA 3UXUA 3C28A 1PVPA 4ACOA 4DKSA 3SQIA 1P4EC 4DWPA 4E0YA 1XO0A 2A3VA 3C29A 1XNSA 2V6EA 2HOIA 1AE9A 4E10A 1Z19A 4A8EA 1MA7A 1FLOA 4E0JA 4E0PA 1OUQA 1PVQA 4E0ZA 3T79A 5CRXA 1KBUA 4CRXA 1NZBA 3VCFA 4F43A 5C6KA 3MGVA 4F41A 1A0PA 4E0GA 1Q3VA 1P7DA 1Q3UA 1M6XA 3CRXA 1CRXA 1PVRA 2CRXA 2HOFA
chains in the Genus database with same CATH topology
5DORA 1F44A 1DRGA 5DCFA 1P4EA 3NKHA 1Z1BA 1M6XC 1AIHA 3UXUA 3C28A 1PVPA 4DKSA 1P4EC 1XO0A 2A3VA 3C29A 1XNSA 2HOIA 1AE9A 1Z19A 4A8EA 1MA7A 1FLOA 1OUQA 1PVQA 5CRXA 1KBUA 4CRXA 1NZBA 3VCFA 5C6KA 3MGVA 1A0PA 1Q3VA 1P7DA 1Q3UA 1M6XA 3CRXA 1CRXA 1PVRA 2CRXA 2HOFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DOR A;  1F44 A;  1DRG A;  5DCF A;  1P4E A;  3NKH A;  1Z1B A;  1M6X C;  1AIH A;  3UXU A;  3C28 A;  1PVP A;  4DKS A;  1P4E C;  1XO0 A;  2A3V A;  3C29 A;  1XNS A;  2HOI A;  1AE9 A;  1Z19 A;  4A8E A;  1MA7 A;  1FLO A;  1OUQ A;  1PVQ A;  5CRX A;  1KBU A;  4CRX A;  1NZB A;  3VCF A;  5C6K A;  3MGV A;  1A0P A;  1Q3V A;  1P7D A;  1Q3U A;  1M6X A;  3CRX A;  1CRX A;  1PVR A;  2CRX A;  2HOF A; 
#chains in the Genus database with same CATH topology
 5DOR A;  1F44 A;  1DRG A;  5DCF A;  1P4E A;  3NKH A;  1Z1B A;  1M6X C;  1AIH A;  3UXU A;  3C28 A;  1PVP A;  4ACO A;  4DKS A;  3SQI A;  1P4E C;  4DWP A;  4E0Y A;  1XO0 A;  2A3V A;  3C29 A;  1XNS A;  2V6E A;  2HOI A;  1AE9 A;  4E10 A;  1Z19 A;  4A8E A;  1MA7 A;  1FLO A;  4E0J A;  4E0P A;  1OUQ A;  1PVQ A;  4E0Z A;  3T79 A;  5CRX A;  1KBU A;  4CRX A;  1NZB A;  3VCF A;  4F43 A;  5C6K A;  3MGV A;  4F41 A;  1A0P A;  4E0G A;  1Q3V A;  1P7D A;  1Q3U A;  1M6X A;  3CRX A;  1CRX A;  1PVR A;  2CRX A;  2HOF A; 
#chains in the Genus database with same CATH homology
 5DOR A;  1F44 A;  1DRG A;  5DCF A;  1P4E A;  3NKH A;  1Z1B A;  1M6X C;  1AIH A;  3UXU A;  3C28 A;  1PVP A;  4DKS A;  1P4E C;  1XO0 A;  2A3V A;  3C29 A;  1XNS A;  2HOI A;  1AE9 A;  1Z19 A;  4A8E A;  1MA7 A;  1FLO A;  1OUQ A;  1PVQ A;  5CRX A;  1KBU A;  4CRX A;  1NZB A;  3VCF A;  5C6K A;  3MGV A;  1A0P A;  1Q3V A;  1P7D A;  1Q3U A;  1M6X A;  3CRX A;  1CRX A;  1PVR A;  2CRX A;  2HOF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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