4A64A

Crystal structure of the n-terminal domain of human cul4b at 2.57a resolution
Total Genus 142
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
142
sequence length
348
structure length
348
Chain Sequence
SMPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords CULLIN-4B
publication title Crystal Structure of the N-Terminal Domain of Human Cul4B at 2.57A Resolution
rcsb
source organism Homo sapiens
molecule tags Cell cycle
total genus 142
structure length 348
sequence length 348
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-10-31
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 4a64A01
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 4a64A02
1.20.1310.10 Mainly Alpha Up-down Bundle 5 helical Cullin repeat like Cullin Repeats 4a64A03
4AP2B 4WQOD 4APFB 1LDKB 4N9F3 3RTRA 4EOZB 1LDJA 3DPLC 4HXIB 3DQVC 2WZKA 4JGHD 1LDKA 4P5OA 1U6GA 4F52A 4A64A
chains in the Genus database with same CATH superfamily
4WQOD 3BQIA 2WZKA 3BQKA 4NUVA 3CMLA 1LDKB 2B1EA 3BQLA 4NUUA 1U6GA 5F3JA 4AP2B 4APFB 3RRCA 2Y8DA 3RTRA 1LDJA 4HXIB 4YFSA 3DQVC 1LDKA 4N9F3 2XU0A 4P5OA 4F52A 2WAUA 4EOZB 3CPZA 3DPLC 4JGHD 2PFVA 4A64A
chains in the Genus database with same CATH topology
4AP2B 4WQOD 4APFB 1LDKB 4N9F3 3RTRA 4EOZB 1LDJA 3DPLC 4HXIB 3DQVC 2WZKA 4JGHD 1LDKA 4P5OA 1U6GA 4F52A 4A64A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AP2 B;  4WQO D;  4APF B;  1LDK B;  4N9F 3;  3RTR A;  4EOZ B;  1LDJ A;  3DPL C;  4HXI B;  3DQV C;  2WZK A;  4JGH D;  1LDK A;  4P5O A;  1U6G A;  4F52 A;  4A64 A; 
#chains in the Genus database with same CATH topology
 4WQO D;  3BQI A;  2WZK A;  3BQK A;  4NUV A;  3CML A;  1LDK B;  2B1E A;  3BQL A;  4NUU A;  1U6G A;  5F3J A;  4AP2 B;  4APF B;  3RRC A;  2Y8D A;  3RTR A;  1LDJ A;  4HXI B;  4YFS A;  3DQV C;  1LDK A;  4N9F 3;  2XU0 A;  4P5O A;  4F52 A;  2WAU A;  4EOZ B;  3CPZ A;  3DPL C;  4JGH D;  2PFV A;  4A64 A; 
#chains in the Genus database with same CATH homology
 4AP2 B;  4WQO D;  4APF B;  1LDK B;  4N9F 3;  3RTR A;  4EOZ B;  1LDJ A;  3DPL C;  4HXI B;  3DQV C;  2WZK A;  4JGH D;  1LDK A;  4P5O A;  1U6G A;  4F52 A;  4A64 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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