The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
102
|
sequence length |
309
|
structure length |
295
|
Chain Sequence |
ASLQFEDKWDFMRPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGPAKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEITLSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHII
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase/viral protein
|
| molecule keywords |
Cullin-5
|
| publication title |
Structural basis for hijacking CBF-b and CUL5 E3 ligase complex by HIV-1 Vif
rcsb |
| source organism |
Homo sapiens
|
| total genus |
102
|
| structure length |
295
|
| sequence length |
309
|
| chains with identical sequence |
9, C, I, O, U, V, f, l, r, w, x
|
| ec nomenclature | |
| pdb deposition date | 2013-10-21 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Cullin Repeats | ||
| Mainly Alpha | Up-down Bundle | 5 helical Cullin repeat like | Cullin Repeats |
#chains in the Genus database with same CATH superfamily 1LDK A; 4JGH D; 4F52 A; 1LDJ A; 1U6G A; 3RTR A; 1LDK B; 4APF B; 4AP2 B; 4HXI B; 4A64 A; 3DPL C; 4WQO D; 4EOZ B; 3DQV C; 4N9F 3; 2WZK A; 4P5O A; #chains in the Genus database with same CATH topology 1LDK A; 2B1E A; 3BQI A; 1LDJ A; 3DPL C; 3DQV C; 3CPZ A; 2WZK A; 4F52 A; 3CML A; 1U6G A; 3BQK A; 2PFV A; 4YFS A; 4A64 A; 4WQO D; 4P5O A; 4JGH D; 5F3J A; 4HXI B; 3RRC A; 4EOZ B; 2XU0 A; 3RTR A; 4NUV A; 4APF B; 1LDK B; 4AP2 B; 2Y8D A; 2WAU A; 3BQL A; 4NUU A; 4N9F 3; #chains in the Genus database with same CATH homology 1LDK A; 4JGH D; 4F52 A; 1LDJ A; 1U6G A; 3RTR A; 1LDK B; 4APF B; 4AP2 B; 4HXI B; 4A64 A; 3DPL C; 4WQO D; 4EOZ B; 3DQV C; 4N9F 3; 2WZK A; 4P5O A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
