4DRA | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	74
structure length	74
Chain Sequence	SGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQLLLDF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Homo sapiens
publication title	The structure of the FANCM-MHF complex reveals physical features for functional assembly pubmed doi rcsb
molecule keywords	Centromere protein S
total genus	24
structure length	74
sequence length	74
chains with identical sequence	F, G, H
ec nomenclature
pdb deposition date	2012-02-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
E	PF09415	CENP-X	CENP-S associating Centromere protein X

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.286.100	Mainly Alpha	Orthogonal Bundle	GTP Cyclohydrolase I; Chain A, domain 1	GTP Cyclohydrolase I; Chain A, domain 1	4draE02

4NE5B 4NE3B 4NE6B 4DRBJ 4E44B 4DRAE 4E45B 3B0BC
chains in the Genus database with same CATH superfamily

3LW5G 4NE3B 4NE6B 1A8RA 1WURA 2WSCK 1WM9A 4E44B 1EL6A 4JA3A 1TFEA 4DU6A 2P11A 2WSEG 2KR1A 2LO0A 4R8QA 4NE5B 1N3RA 4QPMA 1WPLA 3LW5K 2WSFG 4Q7JA 1AIPC 2LNZA 4DRAE 3B0BC 1A9CA 1FB1A 1WUQA 2WSEK 5DMZA 1EFUB 2WSFK 1IS7A 4E45B 1N3SA 1FBXA 3BMBA 1GTPA 2WSCG 3VEJA 4DRBJ 1IS8A 2O01G 2PN0A 1N3TA
chains in the Genus database with same CATH topology

4NE3B 4NE6B 1A8RA 1WURA 4E44B 1WM9A 1EL6A 4JA3A 1TFEA 4DU6A 2P11A 2KR1A 2LO0A 4R8QA 4NE5B 1N3RA 4QPMA 1WPLA 4Q7JA 1AIPC 2LNZA 4DRAE 3B0BC 1A9CA 1FB1A 1WUQA 1EFUB 1IS7A 4E45B 1N3SA 1FBXA 3BMBA 1GTPA 3VEJA 4DRBJ 1IS8A 5DMZA 2PN0A 1N3TA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4NE5 B;  4NE3 B;  4NE6 B;  4DRB J;  4E44 B;  4DRA E;  4E45 B;  3B0B C; 
#chains in the Genus database with same CATH topology
 3LW5 G;  4NE3 B;  4NE6 B;  1A8R A;  1WUR A;  2WSC K;  1WM9 A;  4E44 B;  1EL6 A;  4JA3 A;  1TFE A;  4DU6 A;  2P11 A;  2WSE G;  2KR1 A;  2LO0 A;  4R8Q A;  4NE5 B;  1N3R A;  4QPM A;  1WPL A;  3LW5 K;  2WSF G;  4Q7J A;  1AIP C;  2LNZ A;  4DRA E;  3B0B C;  1A9C A;  1FB1 A;  1WUQ A;  2WSE K;  5DMZ A;  1EFU B;  2WSF K;  1IS7 A;  4E45 B;  1N3S A;  1FBX A;  3BMB A;  1GTP A;  2WSC G;  3VEJ A;  4DRB J;  1IS8 A;  2O01 G;  2PN0 A;  1N3T A; 
#chains in the Genus database with same CATH homology
 4NE3 B;  4NE6 B;  1A8R A;  1WUR A;  4E44 B;  1WM9 A;  1EL6 A;  4JA3 A;  1TFE A;  4DU6 A;  2P11 A;  2KR1 A;  2LO0 A;  4R8Q A;  4NE5 B;  1N3R A;  4QPM A;  1WPL A;  4Q7J A;  1AIP C;  2LNZ A;  4DRA E;  3B0B C;  1A9C A;  1FB1 A;  1WUQ A;  1EFU B;  1IS7 A;  4E45 B;  1N3S A;  1FBX A;  3BMB A;  1GTP A;  3VEJ A;  4DRB J;  1IS8 A;  5DMZ A;  2PN0 A;  1N3T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4DRAE

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations