The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
32
|
sequence length |
148
|
structure length |
141
|
Chain Sequence |
EEPVYDATGKPLFGDPSEVHPQSTLKLPHDRGRGNIKTTLKNLPGNHLGPVSGIYVKPGPVFYQDYMGPVYHRAPLEFFSEAQFCEVTKRIGRVTGSDGRLYHIYVCIDGCILLKLAKRGEPRTLKWIRNFTDCPLWVTSC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Structure of Classical Swine Fever Virus N(pro): A Novel Cysteine Autoprotease and Zinc-Binding Protein Involved in Subversion of Type I Interferon Induction.
pubmed doi rcsb |
| molecule tags |
Hydrolase
|
| source organism |
Classical swine fever virus
|
| molecule keywords |
Hog cholera virus
|
| total genus |
32
|
| structure length |
141
|
| sequence length |
148
|
| ec nomenclature | |
| pdb deposition date | 2012-09-24 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | Spermidine Synthase; Chain: A, domain 2 | Spermidine Synthase; Chain: A, domain 2 |
#chains in the Genus database with same CATH superfamily 3ZFP A; 4H9K A; 3ZFQ A; 4H9J A; 3ZFN A; 3ZFR A; 3ZFU A; 3ZFO A; 3ZFT A; #chains in the Genus database with same CATH topology 4YUZ A; 4CXM A; 1INL A; 3C6K A; 3B7P A; 1IY9 A; 2CMG A; 4YUW A; 3HUM A; 3ZFT A; 3ZFO A; 2I7C A; 3ZFP A; 4YV0 A; 1UIR A; 3RIE A; 4YV1 A; 1TVF A; 3ZFU A; 2PT9 A; 3BWC A; 3C6M A; 2O07 A; 1JQ3 A; 1XJ5 A; 2B2C A; 2CMH A; 4H9K A; 4YUV A; 3ANX A; 5B1S A; 3ZFQ A; 3HUN A; 4H9J A; 3O4F A; 2E5W A; 3BWB A; 4F98 A; 2O06 A; 2PSS A; 2O05 A; 2PWP A; 4YV2 A; 2PT6 A; 4BP1 A; 2HTE A; 3MFD A; 1MJF A; 4CWA A; 2Q41 A; 4YUY A; 4YUX A; 2ZSU A; 3ZFN A; 3ZFR A; 4UOE A; 3RW9 A; 2O0L A; 4BP3 A; #chains in the Genus database with same CATH homology 3ZFP A; 4H9K A; 3ZFQ A; 3MFD A; 4H9J A; 3ZFN A; 3ZFR A; 3ZFU A; 4F98 A; 3ZFO A; 3ZFT A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
